Wall clock time and date at job start Tue Mar 31 2020 11:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47282 * 89.99593 * 9 7 5 11 11 H 1.48498 * 109.47211 * 210.00040 * 9 7 5 12 12 H 1.48506 * 109.46856 * 330.00220 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.46871 * 35.00433 * 15 14 13 17 17 C 1.52994 * 109.47113 * 275.00325 * 15 14 13 18 18 C 1.53003 * 109.47132 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47255 * 59.99555 * 18 17 15 20 20 C 1.52998 * 109.47292 * 299.99919 * 19 18 17 21 21 C 1.52999 * 109.46734 * 60.00379 * 20 19 18 22 22 H 1.09002 * 109.47629 * 59.99985 * 21 20 19 23 23 S 1.81399 * 109.47080 * 179.97438 * 21 20 19 24 24 C 1.81401 * 101.92066 * 304.99950 * 23 21 20 25 25 O 1.42101 * 108.57798 * 59.48683 * 23 21 20 26 26 O 1.42098 * 108.57931 * 190.51159 * 23 21 20 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 39 39 H 1.09003 * 109.47340 * 299.99821 * 17 15 14 40 40 H 1.08995 * 109.47731 * 59.99955 * 17 15 14 41 41 H 1.09004 * 109.46635 * 299.99343 * 18 17 15 42 42 H 1.09005 * 109.46997 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46915 * 180.02562 * 19 18 17 44 44 H 1.08994 * 109.47202 * 60.00773 * 19 18 17 45 45 H 1.09004 * 109.47173 * 300.00565 * 20 19 18 46 46 H 1.09005 * 109.47125 * 179.97438 * 20 19 18 47 47 H 1.08993 * 109.47013 * 60.00384 * 24 23 21 48 48 H 1.09001 * 109.47074 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.46781 * 299.99812 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2273 1.4412 -5.6608 11 1 1.0841 -0.5794 -6.3617 12 1 -0.0593 1.0370 -4.9615 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 1 3.0241 -1.0904 3.5047 17 6 1.0731 -1.8412 4.0249 18 6 1.5638 -2.5343 5.2976 19 6 1.5970 -1.5255 6.4473 20 6 2.5460 -0.3790 6.0927 21 6 2.0551 0.3141 4.8201 22 1 1.0530 0.7099 4.9852 23 16 3.1798 1.6740 4.4000 24 6 3.1819 2.6453 5.9320 25 8 4.4814 1.1398 4.2008 26 8 2.5844 2.4525 3.3711 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 1.8199 0.9435 2.4401 39 1 0.0710 -1.4455 4.1905 40 1 1.0492 -2.5597 3.2056 41 1 2.5660 -2.9300 5.1324 42 1 0.8880 -3.3515 5.5500 43 1 1.9470 -2.0192 7.3539 44 1 0.5949 -1.1299 6.6126 45 1 3.5481 -0.7747 5.9275 46 1 2.5692 0.3400 6.9117 47 1 3.5456 2.0278 6.7532 48 1 3.8329 3.5113 5.8122 49 1 2.1682 2.9808 6.1508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348248533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:25 Heat of formation + Delta-G solvation = -120.258031 kcal Electronic energy + Delta-G solvation = -26668.384183 eV Core-core repulsion = 23141.693635 eV Total energy + Delta-G solvation = -3526.690548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28629 -38.65631 -38.08212 -37.14679 -35.36269 -34.07462 -32.33155 -30.28837 -30.09922 -28.76437 -27.94046 -26.64920 -24.57051 -24.11507 -22.53489 -20.96404 -19.97076 -19.49934 -18.35900 -17.96354 -17.63968 -16.95941 -16.67313 -16.37221 -15.91161 -15.74778 -15.21060 -15.01615 -14.85258 -14.68639 -14.43209 -13.98598 -13.95114 -13.93287 -13.64754 -13.44261 -13.35154 -13.13590 -13.10196 -12.92368 -12.70647 -12.68176 -12.54140 -12.31723 -12.27304 -12.14566 -12.11437 -11.91619 -11.89921 -11.49200 -11.43850 -11.28429 -10.92649 -10.78162 -10.72684 -10.51673 -9.48386 -8.14669 -6.22137 -1.03001 1.39859 1.41273 1.52163 1.73522 2.43266 2.59612 2.80484 3.14782 3.18796 3.39259 3.71279 3.86013 4.05196 4.08279 4.10917 4.15380 4.18123 4.28707 4.32692 4.38154 4.39632 4.49559 4.64441 4.72477 4.76801 4.88325 4.88610 4.97095 4.99281 5.05063 5.13207 5.19248 5.20620 5.23709 5.27413 5.36112 5.46568 5.49604 5.52692 5.54433 5.62119 5.81750 5.89471 5.93897 6.34450 6.34723 6.91732 7.44885 8.98026 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.003540 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.876768 B = 7907.572921 C = 8715.795594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.057 4.057 3 C -0.128 4.128 4 C 0.041 3.959 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.261 1.261 13 C 0.077 3.923 14 N -0.696 5.696 15 C 0.093 3.907 16 H 0.040 0.960 17 C -0.096 4.096 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.555 4.555 22 H 0.174 0.826 23 S 2.371 3.629 24 C -0.627 4.627 25 O -0.987 6.987 26 O -0.977 6.977 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.065 0.935 33 H -0.021 1.021 34 H -0.010 1.010 35 H 0.260 0.740 36 H 0.070 0.930 37 H 0.008 0.992 38 H 0.348 0.652 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.162 0.838 48 H 0.139 0.861 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 4.787 29.688 30.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.058 4.058 3 C -0.185 4.185 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.185 1.185 13 C -0.053 4.053 14 N -0.337 5.337 15 C -0.018 4.018 16 H 0.058 0.942 17 C -0.135 4.135 18 C -0.162 4.162 19 C -0.145 4.145 20 C -0.151 4.151 21 C -0.666 4.666 22 H 0.191 0.809 23 S 2.562 3.438 24 C -0.781 4.781 25 O -0.984 6.984 26 O -0.973 6.973 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.083 0.917 33 H -0.002 1.002 34 H 0.008 0.992 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.026 0.974 38 H 0.175 0.825 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.139 0.861 47 H 0.180 0.820 48 H 0.157 0.843 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.147 4.596 28.724 29.259 hybrid contribution 0.829 0.087 -1.114 1.391 sum -2.318 4.683 27.611 28.101 Atomic orbital electron populations 1.21488 0.93535 1.00525 1.00692 1.20527 0.96973 0.95060 0.93209 1.21752 0.98969 0.96390 1.01433 1.19001 0.93744 0.94336 0.92599 1.21602 1.30418 1.12001 0.91403 0.91586 1.25949 0.95639 0.95898 1.02621 1.70122 1.38763 1.24964 1.24083 0.85525 0.79113 0.78195 0.78703 1.20202 1.20936 1.18549 1.21941 0.95301 0.98282 0.89726 1.60785 1.64334 1.07601 1.00957 1.21425 0.98135 0.95032 0.87187 0.94230 1.21456 0.99026 0.95237 0.97784 1.21620 1.01449 0.98711 0.94463 1.21477 1.00261 0.94928 0.97872 1.21685 1.00457 0.99986 0.93017 1.30242 1.17768 1.13878 1.04741 0.80853 1.08944 0.76148 0.78622 0.80106 1.30042 1.14491 1.15065 1.18515 1.93548 1.38577 1.79876 1.86369 1.93511 1.78714 1.69461 1.55602 0.91459 0.93959 0.94314 0.95506 0.92798 0.91659 1.00241 0.99154 0.93103 0.91147 0.97412 0.82509 0.90211 0.93269 0.92676 0.90410 0.89346 0.89993 0.90698 0.86086 0.81973 0.84290 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.06 71.98 0.58 -3.76 16 2 C -0.06 -2.59 0.60 -52.18 -0.03 -2.62 16 3 C -0.13 -5.68 7.89 71.98 0.57 -5.11 16 4 C 0.04 2.28 4.04 29.85 0.12 2.40 16 5 C -0.52 -30.24 7.65 25.60 0.20 -30.04 16 6 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -59.46 13.29 21.45 0.28 -59.17 16 9 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.08 3.06 4.45 86.30 0.38 3.44 16 14 N -0.70 -22.41 5.52 -491.55 -2.71 -25.13 16 15 C 0.09 2.30 1.96 44.91 0.09 2.39 16 16 H 0.04 1.14 7.80 -2.39 -0.02 1.12 16 17 C -0.10 -2.02 5.43 30.59 0.17 -1.85 16 18 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 19 C -0.11 -0.93 5.92 30.59 0.18 -0.75 16 20 C -0.11 -1.03 4.91 30.59 0.15 -0.88 16 21 C -0.55 -8.60 2.27 30.59 0.07 -8.53 16 22 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 23 S 2.37 47.13 4.59 -56.49 -0.26 46.87 16 24 C -0.63 -3.88 10.01 113.37 1.14 -2.74 16 25 O -0.99 -28.69 18.06 -127.37 -2.30 -30.99 16 26 O -0.98 -27.88 15.43 -127.37 -1.97 -29.85 16 27 H 0.07 2.44 7.60 -2.39 -0.02 2.42 16 28 H 0.04 1.83 6.62 -2.39 -0.02 1.82 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 2.46 6.62 -2.38 -0.02 2.44 16 32 H 0.06 2.62 6.45 -2.39 -0.02 2.60 16 33 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 35 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.07 2.76 7.44 -2.39 -0.02 2.74 16 37 H 0.01 0.33 8.05 -2.39 -0.02 0.31 16 38 H 0.35 11.56 3.06 -89.69 -0.27 11.29 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.23 7.45 -2.39 -0.02 1.22 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 43 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.12 0.05 6.39 -2.38 -0.02 0.04 16 47 H 0.16 0.03 6.77 -2.39 -0.02 0.02 16 48 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -82.64 376.41 -0.04 -82.69 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.64 Total: 16.87 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 4.25 Total: -49.50 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.43 Total: -84.30 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -4.27 Total: -60.84 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 47.13 SS G_CDS: -0.26 Total: 46.87 kcal Total: -82.64 -0.04 -82.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.573 kcal (2) G-P(sol) polarization free energy of solvation -82.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds