Wall clock time and date at job start Tue Mar 31 2020 11:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 C 1.53007 * 109.47093 * 240.00117 * 2 1 3 5 5 C 1.50697 * 109.46966 * 59.99784 * 4 2 1 6 6 H 1.07992 * 120.00486 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99659 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99838 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47080 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47015 * 119.99513 * 9 7 5 12 12 H 1.48494 * 109.47137 * 239.99420 * 9 7 5 13 13 C 1.52997 * 109.47255 * 120.00144 * 2 1 3 14 14 N 1.46907 * 109.47218 * 300.00103 * 13 2 1 15 15 C 1.46894 * 110.99982 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.47779 * 35.00100 * 15 14 13 17 17 C 1.53006 * 109.47224 * 274.99626 * 15 14 13 18 18 C 1.52997 * 109.47127 * 300.00546 * 17 15 14 19 19 C 1.53002 * 109.47143 * 299.99835 * 18 17 15 20 20 C 1.52996 * 109.47343 * 60.00066 * 19 18 17 21 21 C 1.53002 * 109.46750 * 154.99973 * 15 14 13 22 22 H 1.09004 * 109.46930 * 179.97438 * 21 15 14 23 23 S 1.81399 * 109.47162 * 299.99666 * 21 15 14 24 24 C 1.81404 * 101.91985 * 180.02562 * 23 21 15 25 25 O 1.42098 * 108.57930 * 294.48695 * 23 21 15 26 26 O 1.42100 * 108.57478 * 65.51812 * 23 21 15 27 27 H 1.08992 * 109.47070 * 299.99554 * 1 2 3 28 28 H 1.08998 * 109.47274 * 60.00455 * 1 2 3 29 29 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46692 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46798 * 299.99837 * 3 2 1 32 32 H 1.08992 * 109.46908 * 60.00346 * 3 2 1 33 33 H 1.08997 * 109.47121 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46924 * 299.99923 * 4 2 1 35 35 H 0.97000 * 120.00318 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47410 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.47240 * 59.99785 * 13 2 1 38 38 H 1.00897 * 110.99591 * 56.04247 * 14 13 2 39 39 H 1.08998 * 109.46509 * 60.00117 * 17 15 14 40 40 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47261 * 59.99697 * 18 17 15 42 42 H 1.09002 * 109.47153 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47312 * 180.02562 * 19 18 17 44 44 H 1.09004 * 109.46930 * 300.00065 * 19 18 17 45 45 H 1.09001 * 109.47372 * 180.02562 * 20 19 18 46 46 H 1.09004 * 109.47108 * 60.00108 * 20 19 18 47 47 H 1.08995 * 109.46830 * 60.00457 * 24 23 21 48 48 H 1.09001 * 109.46749 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.47476 * 300.00325 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2482 0.3988 -5.2572 10 1 0.4236 1.5657 -4.8530 11 1 2.4035 0.8647 -6.0656 12 1 0.4226 -0.5340 -6.0655 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0219 -0.6946 3.6703 16 1 3.0240 -1.0903 3.5048 17 6 1.0729 -1.8412 4.0250 18 6 -0.3336 -1.2858 4.2573 19 6 -0.3002 -0.2772 5.4073 20 6 0.6487 0.8694 5.0527 21 6 2.0554 0.3140 4.8203 22 1 2.4048 -0.1801 5.7269 23 16 3.1804 1.6734 4.3998 24 6 3.0653 2.7246 5.8738 25 8 4.5017 1.1576 4.3143 26 8 2.6396 2.3830 3.2938 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7217 -1.2491 34 1 1.6767 -1.7489 -1.2493 35 1 2.8608 -1.8829 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 0.5439 0.0413 2.4401 39 1 1.0491 -2.5596 3.2056 40 1 1.4226 -2.3349 4.9316 41 1 -0.6835 -0.7917 3.3508 42 1 -1.0097 -2.1027 4.5095 43 1 -1.3023 0.1182 5.5731 44 1 0.0497 -0.7712 6.3138 45 1 0.6729 1.5878 5.8721 46 1 0.2988 1.3635 4.1462 47 1 3.3858 2.1594 6.7489 48 1 3.7079 3.5963 5.7494 49 1 2.0337 3.0494 6.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348248534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:29 Heat of formation + Delta-G solvation = -93.148547 kcal Electronic energy + Delta-G solvation = -26987.602861 eV Core-core repulsion = 23462.087868 eV Total energy + Delta-G solvation = -3525.514993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.62166 -36.89482 -36.76691 -35.75017 -33.54311 -32.05800 -31.52618 -29.50743 -29.25413 -26.77156 -26.16174 -25.01326 -23.25587 -22.79402 -22.27796 -19.33624 -18.63051 -17.96863 -16.97675 -16.20237 -16.07950 -15.83781 -15.61399 -15.09758 -14.78417 -14.34232 -14.03709 -13.87395 -13.58310 -13.38032 -13.20811 -12.95035 -12.88790 -12.59149 -12.30143 -11.99177 -11.87934 -11.84143 -11.79739 -11.73905 -11.56686 -11.37486 -10.92980 -10.92448 -10.82003 -10.70302 -10.63341 -10.46451 -10.34453 -10.13112 -10.00143 -9.99430 -9.55089 -8.90040 -8.73523 -8.24306 -8.09430 -5.88887 -3.88107 0.04575 2.83778 3.37740 3.45395 3.49521 3.71287 3.93810 4.21223 4.33173 4.44515 4.56142 4.63645 4.67849 4.73684 4.91067 5.02402 5.03797 5.17854 5.23249 5.34632 5.44772 5.47175 5.51253 5.66117 5.74473 5.78273 5.83573 5.86548 5.91774 6.01438 6.09851 6.14060 6.32942 6.44142 6.61233 6.88004 6.95509 7.00200 7.27483 7.34248 7.47423 7.51598 7.69170 7.80281 7.96083 8.12398 8.57667 9.17652 9.74247 11.22968 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.003761 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.106578 B = 7443.789453 C = 8124.228705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 C -0.121 4.121 4 C 0.033 3.967 5 C -0.503 4.503 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.068 3.932 14 N -0.681 5.681 15 C 0.100 3.900 16 H 0.092 0.908 17 C -0.140 4.140 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.108 4.108 21 C -0.557 4.557 22 H 0.128 0.872 23 S 2.430 3.570 24 C -0.674 4.674 25 O -0.947 6.947 26 O -0.895 6.895 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.257 0.743 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.347 0.653 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 3.644 24.752 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 C -0.178 4.178 4 C -0.005 4.005 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.060 4.060 14 N -0.315 5.315 15 C -0.012 4.012 16 H 0.110 0.890 17 C -0.180 4.180 18 C -0.162 4.162 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.666 4.666 22 H 0.146 0.854 23 S 2.610 3.390 24 C -0.821 4.821 25 O -0.944 6.944 26 O -0.892 6.892 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.170 0.830 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.453 4.170 23.864 24.470 hybrid contribution -1.176 -0.665 -0.049 1.352 sum -4.629 3.506 23.814 24.512 Atomic orbital electron populations 1.21769 0.96265 1.00087 1.00416 1.20618 0.94546 0.96543 0.94042 1.21649 0.99864 0.95418 1.00858 1.19136 0.96180 0.94852 0.90288 1.21294 1.30491 1.11734 0.90584 0.92197 1.25014 0.95491 0.95142 0.99018 1.69978 1.37507 1.23349 1.23055 0.86618 0.78582 0.79727 0.83565 1.19768 1.21200 1.21307 1.22184 0.99909 0.94771 0.89120 1.60787 1.17699 1.52469 1.00546 1.21186 1.00220 0.91011 0.88818 0.89014 1.22088 0.95583 0.98116 1.02216 1.21556 0.96863 0.98826 0.98934 1.21441 0.99045 0.95923 0.98397 1.21420 0.91697 0.98306 1.03205 1.30211 1.11993 1.16879 1.07545 0.85379 1.07932 0.76223 0.77825 0.77049 1.30512 1.11295 1.17087 1.23182 1.93572 1.35097 1.79645 1.86100 1.93632 1.79506 1.70841 1.45232 0.94881 0.91720 0.94282 0.94349 0.93129 0.92207 0.96649 0.97049 0.93320 0.91376 0.95506 0.82987 0.91033 0.91492 0.91368 0.91661 0.91480 0.91931 0.91203 0.88793 0.86092 0.85707 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 2 C -0.06 -1.18 0.60 -154.50 -0.09 -1.27 16 3 C -0.12 -2.55 8.06 37.16 0.30 -2.25 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.50 -14.09 7.65 -34.44 -0.26 -14.36 16 6 H 0.06 1.64 5.68 -52.49 -0.30 1.35 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 9 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 C 0.07 1.20 4.45 -3.82 -0.02 1.18 16 14 N -0.68 -9.57 3.62 -106.72 -0.39 -9.96 16 15 C 0.10 1.13 2.30 -67.71 -0.16 0.97 16 16 H 0.09 1.12 7.80 -51.93 -0.40 0.72 16 17 C -0.14 -1.34 5.52 -26.73 -0.15 -1.49 16 18 C -0.12 -1.06 5.67 -26.73 -0.15 -1.21 16 19 C -0.11 -0.75 5.92 -26.73 -0.16 -0.91 16 20 C -0.11 -0.79 4.72 -26.73 -0.13 -0.91 16 21 C -0.56 -4.80 2.39 -26.73 -0.06 -4.86 16 22 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 23 S 2.43 26.54 4.76 -107.50 -0.51 26.03 16 24 C -0.67 -4.34 10.17 101.05 1.03 -3.31 16 25 O -0.95 -14.14 18.10 -57.83 -1.05 -15.19 16 26 O -0.90 -13.18 16.40 -57.83 -0.95 -14.13 16 27 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 28 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 32 H 0.06 1.18 7.20 -51.93 -0.37 0.81 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 37 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 38 H 0.35 4.55 3.61 -39.29 -0.14 4.41 16 39 H 0.07 0.77 7.45 -51.93 -0.39 0.39 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.65 6.26 -51.93 -0.32 0.33 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 46 H 0.09 0.82 7.12 -51.93 -0.37 0.45 16 47 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.12 0.78 8.14 -51.92 -0.42 0.35 16 49 H 0.13 0.57 6.87 -51.93 -0.36 0.21 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -35.14 373.57 -9.93 -45.07 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.62 Total: 0.50 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 0.23 Total: -28.35 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.35 Total: -36.63 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.99 Total: -29.32 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 26.54 SS G_CDS: -0.51 Total: 26.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.14 -9.93 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.077 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds