Wall clock time and date at job start Tue Mar 31 2020 11:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 C 1.53007 * 109.47093 * 240.00117 * 2 1 3 5 5 C 1.50697 * 109.46966 * 59.99784 * 4 2 1 6 6 H 1.07992 * 120.00486 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99659 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99838 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47080 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47015 * 119.99513 * 9 7 5 12 12 H 1.48494 * 109.47137 * 239.99420 * 9 7 5 13 13 C 1.52997 * 109.47255 * 120.00144 * 2 1 3 14 14 N 1.46907 * 109.47218 * 300.00103 * 13 2 1 15 15 C 1.46894 * 110.99982 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.47779 * 35.00100 * 15 14 13 17 17 C 1.53006 * 109.47224 * 274.99626 * 15 14 13 18 18 C 1.52997 * 109.47127 * 300.00546 * 17 15 14 19 19 C 1.53002 * 109.47143 * 299.99835 * 18 17 15 20 20 C 1.52996 * 109.47343 * 60.00066 * 19 18 17 21 21 C 1.53002 * 109.46750 * 154.99973 * 15 14 13 22 22 H 1.09004 * 109.46930 * 179.97438 * 21 15 14 23 23 S 1.81399 * 109.47162 * 299.99666 * 21 15 14 24 24 C 1.81404 * 101.91985 * 180.02562 * 23 21 15 25 25 O 1.42098 * 108.57930 * 294.48695 * 23 21 15 26 26 O 1.42100 * 108.57478 * 65.51812 * 23 21 15 27 27 H 1.08992 * 109.47070 * 299.99554 * 1 2 3 28 28 H 1.08998 * 109.47274 * 60.00455 * 1 2 3 29 29 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46692 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46798 * 299.99837 * 3 2 1 32 32 H 1.08992 * 109.46908 * 60.00346 * 3 2 1 33 33 H 1.08997 * 109.47121 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46924 * 299.99923 * 4 2 1 35 35 H 0.97000 * 120.00318 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47410 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.47240 * 59.99785 * 13 2 1 38 38 H 1.00897 * 110.99591 * 56.04247 * 14 13 2 39 39 H 1.08998 * 109.46509 * 60.00117 * 17 15 14 40 40 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47261 * 59.99697 * 18 17 15 42 42 H 1.09002 * 109.47153 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47312 * 180.02562 * 19 18 17 44 44 H 1.09004 * 109.46930 * 300.00065 * 19 18 17 45 45 H 1.09001 * 109.47372 * 180.02562 * 20 19 18 46 46 H 1.09004 * 109.47108 * 60.00108 * 20 19 18 47 47 H 1.08995 * 109.46830 * 60.00457 * 24 23 21 48 48 H 1.09001 * 109.46749 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.47476 * 300.00325 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2482 0.3988 -5.2572 10 1 0.4236 1.5657 -4.8530 11 1 2.4035 0.8647 -6.0656 12 1 0.4226 -0.5340 -6.0655 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0219 -0.6946 3.6703 16 1 3.0240 -1.0903 3.5048 17 6 1.0729 -1.8412 4.0250 18 6 -0.3336 -1.2858 4.2573 19 6 -0.3002 -0.2772 5.4073 20 6 0.6487 0.8694 5.0527 21 6 2.0554 0.3140 4.8203 22 1 2.4048 -0.1801 5.7269 23 16 3.1804 1.6734 4.3998 24 6 3.0653 2.7246 5.8738 25 8 4.5017 1.1576 4.3143 26 8 2.6396 2.3830 3.2938 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7217 -1.2491 34 1 1.6767 -1.7489 -1.2493 35 1 2.8608 -1.8829 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 0.5439 0.0413 2.4401 39 1 1.0491 -2.5596 3.2056 40 1 1.4226 -2.3349 4.9316 41 1 -0.6835 -0.7917 3.3508 42 1 -1.0097 -2.1027 4.5095 43 1 -1.3023 0.1182 5.5731 44 1 0.0497 -0.7712 6.3138 45 1 0.6729 1.5878 5.8721 46 1 0.2988 1.3635 4.1462 47 1 3.3858 2.1594 6.7489 48 1 3.7079 3.5963 5.7494 49 1 2.0337 3.0494 6.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348248534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:29 Heat of formation + Delta-G solvation = -117.759085 kcal Electronic energy + Delta-G solvation = -26988.670054 eV Core-core repulsion = 23462.087868 eV Total energy + Delta-G solvation = -3526.582186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54402 -38.40663 -37.73174 -36.68095 -35.03520 -33.82202 -32.19012 -30.41129 -30.00331 -28.75424 -27.85677 -26.61837 -24.40864 -23.93011 -23.31624 -20.13971 -19.67268 -19.39485 -18.32716 -17.86184 -16.98847 -16.70325 -16.64502 -16.54283 -15.93022 -15.69802 -15.05947 -15.02189 -14.70387 -14.44391 -14.26866 -13.93840 -13.88620 -13.79464 -13.64416 -13.38053 -12.99839 -12.98530 -12.83807 -12.76499 -12.73791 -12.64073 -12.50181 -12.34203 -12.21987 -12.13758 -12.01468 -11.87739 -11.64255 -11.38818 -11.29532 -11.13631 -10.85008 -10.71765 -10.69734 -10.50833 -9.25486 -8.13712 -6.20591 -0.72140 1.39410 1.40550 1.53279 2.10951 2.43917 2.94932 3.13562 3.19999 3.35382 3.64954 3.72321 4.00398 4.09012 4.16113 4.18744 4.22865 4.24595 4.35706 4.39968 4.42499 4.52085 4.56147 4.68536 4.74529 4.83638 4.92892 4.95888 4.99368 5.07306 5.11348 5.15882 5.23684 5.26194 5.27318 5.31415 5.35952 5.52319 5.55109 5.57398 5.59384 5.74358 5.89592 5.93242 6.03966 6.37730 6.56370 6.94273 7.46457 8.99082 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.003761 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.106578 B = 7443.789453 C = 8124.228705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.108 4.108 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.279 1.279 13 C 0.081 3.919 14 N -0.679 5.679 15 C 0.089 3.911 16 H 0.073 0.927 17 C -0.136 4.136 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.539 4.539 22 H 0.167 0.833 23 S 2.406 3.594 24 C -0.648 4.648 25 O -1.005 7.005 26 O -0.949 6.949 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.017 0.983 31 H 0.035 0.965 32 H 0.077 0.923 33 H -0.022 1.022 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.046 0.954 37 H 0.028 0.972 38 H 0.354 0.646 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.152 0.848 48 H 0.129 0.871 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 4.855 27.984 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.166 4.166 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.205 1.205 13 C -0.048 4.048 14 N -0.315 5.315 15 C -0.022 4.022 16 H 0.091 0.909 17 C -0.176 4.176 18 C -0.164 4.164 19 C -0.143 4.143 20 C -0.151 4.151 21 C -0.650 4.650 22 H 0.185 0.815 23 S 2.594 3.406 24 C -0.800 4.800 25 O -1.002 7.002 26 O -0.946 6.946 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.096 0.904 33 H -0.003 1.003 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.178 0.822 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.127 0.873 46 H 0.095 0.905 47 H 0.170 0.830 48 H 0.147 0.853 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.743 5.382 27.067 28.188 hybrid contribution -0.442 -1.062 -0.931 1.480 sum -6.184 4.320 26.136 27.203 Atomic orbital electron populations 1.21654 0.94264 1.00501 1.01188 1.20479 0.96089 0.95771 0.93103 1.21532 0.98446 0.95724 1.00860 1.19013 0.93777 0.94115 0.92852 1.21644 1.30180 1.11792 0.91449 0.91654 1.25937 0.95709 0.95923 1.02602 1.70122 1.38923 1.25038 1.23943 0.85499 0.78110 0.78827 0.79246 1.18484 1.20949 1.20511 1.21828 0.98549 0.94748 0.89716 1.60686 1.18098 1.52490 1.00213 1.21304 0.99684 0.92622 0.88587 0.90891 1.22044 0.96134 0.96985 1.02393 1.21594 0.95793 0.99664 0.99362 1.21450 0.99740 0.95112 0.98040 1.21572 0.90233 0.99287 1.04047 1.30044 1.12485 1.15000 1.07491 0.81542 1.08057 0.75412 0.78665 0.78483 1.30235 1.13645 1.15940 1.20140 1.93504 1.38154 1.80866 1.87673 1.93567 1.79823 1.71968 1.49280 0.91475 0.93463 0.94045 0.96397 0.94568 0.90437 1.00338 0.99458 0.93184 0.93562 0.95415 0.82209 0.93008 0.89414 0.92805 0.90746 0.90093 0.90035 0.87332 0.90478 0.82963 0.85251 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 7.89 71.98 0.57 -3.91 16 2 C -0.05 -2.33 0.60 -52.18 -0.03 -2.36 16 3 C -0.11 -4.77 8.06 71.98 0.58 -4.19 16 4 C 0.04 2.20 4.04 29.85 0.12 2.32 16 5 C -0.51 -29.72 7.65 25.60 0.20 -29.52 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -59.29 13.29 21.45 0.28 -59.01 16 9 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 C 0.08 2.99 4.45 86.30 0.38 3.38 16 14 N -0.68 -19.27 3.62 -491.56 -1.78 -21.05 16 15 C 0.09 1.97 2.30 44.92 0.10 2.07 16 16 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 17 C -0.14 -2.39 5.52 30.60 0.17 -2.22 16 18 C -0.13 -1.80 5.67 30.59 0.17 -1.63 16 19 C -0.11 -0.96 5.92 30.59 0.18 -0.77 16 20 C -0.11 -1.18 4.72 30.59 0.14 -1.03 16 21 C -0.54 -7.82 2.39 30.60 0.07 -7.74 16 22 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 23 S 2.41 50.32 4.76 -56.49 -0.27 50.05 16 24 C -0.65 -5.64 10.17 113.37 1.15 -4.49 16 25 O -1.00 -30.95 18.10 -127.37 -2.30 -33.25 16 26 O -0.95 -28.23 16.40 -127.37 -2.09 -30.32 16 27 H 0.07 2.06 6.57 -2.39 -0.02 2.04 16 28 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 1.65 6.62 -2.39 -0.02 1.64 16 32 H 0.08 3.12 7.20 -2.39 -0.02 3.11 16 33 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 37 H 0.03 1.00 7.44 -2.39 -0.02 0.98 16 38 H 0.35 9.01 3.61 -89.70 -0.32 8.69 16 39 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 0.92 6.26 -2.38 -0.01 0.91 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.49 8.14 -2.38 -0.02 0.48 16 45 H 0.11 0.33 6.56 -2.39 -0.02 0.31 16 46 H 0.08 1.12 7.12 -2.38 -0.02 1.10 16 47 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.16 0.51 6.87 -2.39 -0.02 0.49 16 Total: -1.00 -82.19 373.57 0.74 -81.45 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.59 Total: 13.98 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 4.28 Total: -49.95 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.50 Total: -80.06 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -4.39 Total: -63.57 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 50.32 SS G_CDS: -0.27 Total: 50.05 kcal Total: -82.19 0.74 -81.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.306 kcal (2) G-P(sol) polarization free energy of solvation -82.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds