Wall clock time and date at job start Tue Mar 31 2020 11:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99926 * 2 1 3 5 5 C 1.50702 * 109.47159 * 299.99938 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47035 * 239.99696 * 2 1 3 14 14 N 1.46902 * 109.46988 * 60.00401 * 13 2 1 15 15 C 1.46901 * 110.99844 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.47269 * 324.99652 * 15 14 13 17 17 C 1.52999 * 109.47147 * 85.00114 * 15 14 13 18 18 C 1.53004 * 109.47251 * 59.99721 * 17 15 14 19 19 C 1.52995 * 109.47239 * 60.00079 * 18 17 15 20 20 C 1.52996 * 109.47243 * 300.00314 * 19 18 17 21 21 C 1.53002 * 109.47149 * 204.99677 * 15 14 13 22 22 H 1.08996 * 109.47273 * 180.02562 * 21 15 14 23 23 S 1.81406 * 109.47062 * 60.00078 * 21 15 14 24 24 C 1.81392 * 101.92292 * 185.00026 * 23 21 15 25 25 O 1.42097 * 108.57729 * 299.49002 * 23 21 15 26 26 O 1.42099 * 108.57597 * 70.51207 * 23 21 15 27 27 H 1.08994 * 109.47333 * 300.00159 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00026 * 1 2 3 29 29 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46610 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47486 * 299.99594 * 3 2 1 32 32 H 1.09003 * 109.47277 * 60.00121 * 3 2 1 33 33 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47405 * 59.99971 * 4 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46640 * 179.97438 * 13 2 1 37 37 H 1.08994 * 109.47663 * 300.00253 * 13 2 1 38 38 H 1.00893 * 111.00113 * 303.94754 * 14 13 2 39 39 H 1.08996 * 109.47363 * 179.97438 * 17 15 14 40 40 H 1.09000 * 109.46858 * 299.99770 * 17 15 14 41 41 H 1.08994 * 109.47170 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.46932 * 300.00258 * 18 17 15 43 43 H 1.09010 * 109.47031 * 59.99628 * 19 18 17 44 44 H 1.08995 * 109.47776 * 179.97438 * 19 18 17 45 45 H 1.09004 * 109.47615 * 179.97438 * 20 19 18 46 46 H 1.08996 * 109.47046 * 299.99893 * 20 19 18 47 47 H 1.09006 * 109.46999 * 59.99902 * 24 23 21 48 48 H 1.08997 * 109.47496 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.47134 * 300.00443 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8660 -0.4852 3.7320 8 7 2.6221 -1.5544 3.8527 9 14 1.2370 0.3909 5.2571 10 1 0.4126 1.5581 4.8529 11 1 0.4091 -0.5450 6.0597 12 1 2.3885 0.8559 6.0714 13 6 2.0401 -0.7213 -1.2492 14 7 1.5504 -0.0288 -2.4486 15 6 2.0219 -0.6946 -3.6702 16 1 3.0240 -1.0903 -3.5047 17 6 1.0729 -1.8411 -4.0249 18 6 -0.3336 -1.2856 -4.2572 19 6 -0.3002 -0.2771 -5.4072 20 6 0.6488 0.8694 -5.0527 21 6 2.0554 0.3139 -4.8203 22 1 2.4048 -0.1802 -5.7268 23 16 3.1806 1.6734 -4.3999 24 6 2.9489 2.7992 -5.8031 25 8 2.7009 2.3108 -3.2240 26 8 4.5139 1.1827 -4.4284 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1301 -0.7209 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 2.8534 -1.8880 4.7337 36 1 3.1300 -0.7209 -1.2493 37 1 1.6768 -1.7489 -1.2492 38 1 0.5440 0.0413 -2.4402 39 1 1.4225 -2.3349 -4.9316 40 1 1.0491 -2.5596 -3.2056 41 1 -1.0098 -2.1024 -4.5095 42 1 -0.6834 -0.7916 -3.3508 43 1 0.0498 -0.7711 -6.3137 44 1 -1.3022 0.1184 -5.5731 45 1 0.6731 1.5878 -5.8721 46 1 0.2991 1.3635 -4.1462 47 1 1.9046 3.1080 -5.8526 48 1 3.5819 3.6769 -5.6732 49 1 3.2210 2.2890 -6.7271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348248535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:33 Heat of formation + Delta-G solvation = -91.850346 kcal Electronic energy + Delta-G solvation = -26997.706701 eV Core-core repulsion = 23472.248003 eV Total energy + Delta-G solvation = -3525.458699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.62317 -36.88164 -36.76254 -35.73902 -33.54472 -32.05732 -31.54880 -29.49916 -29.23256 -26.76700 -26.14939 -25.00315 -23.25818 -22.79046 -22.27548 -19.33896 -18.61975 -17.96521 -16.97817 -16.18746 -16.06291 -15.84694 -15.61010 -15.09311 -14.77880 -14.34184 -14.02749 -13.89267 -13.57392 -13.36995 -13.19735 -12.95283 -12.87033 -12.58661 -12.28908 -11.98370 -11.87593 -11.83874 -11.79006 -11.74262 -11.56048 -11.36915 -10.92573 -10.91364 -10.81654 -10.70294 -10.62583 -10.46299 -10.33769 -10.12364 -9.99600 -9.98815 -9.54110 -8.89270 -8.72984 -8.24111 -8.06611 -5.88763 -3.87889 0.05626 2.83789 3.37738 3.45388 3.49512 3.71135 3.95787 4.20853 4.33128 4.44591 4.56237 4.64681 4.67738 4.73338 4.92219 5.02191 5.03899 5.17484 5.22976 5.34335 5.45721 5.47335 5.51092 5.65627 5.74589 5.77753 5.84039 5.86288 5.91596 6.01618 6.10067 6.13894 6.33322 6.44889 6.61914 6.89355 6.96859 7.01248 7.28928 7.35149 7.48723 7.53496 7.70266 7.80644 7.96700 8.12602 8.57941 9.17853 9.74410 11.23111 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.003762 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.897686 B = 7441.092289 C = 8118.746365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 C -0.119 4.119 4 C 0.033 3.967 5 C -0.502 4.502 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.069 3.931 14 N -0.678 5.678 15 C 0.100 3.900 16 H 0.090 0.910 17 C -0.140 4.140 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.557 4.557 22 H 0.128 0.872 23 S 2.428 3.572 24 C -0.673 4.673 25 O -0.891 6.891 26 O -0.949 6.949 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.346 0.654 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.127 0.873 48 H 0.124 0.876 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 3.820 -24.601 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 C -0.177 4.177 4 C -0.005 4.005 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.312 5.312 15 C -0.012 4.012 16 H 0.108 0.892 17 C -0.180 4.180 18 C -0.162 4.162 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.666 4.666 22 H 0.146 0.854 23 S 2.608 3.392 24 C -0.820 4.820 25 O -0.888 6.888 26 O -0.946 6.946 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.169 0.831 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.619 4.315 -23.740 24.399 hybrid contribution -1.235 -0.647 0.078 1.396 sum -4.854 3.669 -23.663 24.432 Atomic orbital electron populations 1.21770 0.96304 1.00057 1.00393 1.20612 0.94507 0.96596 0.94013 1.21640 0.99868 0.95353 1.00809 1.19137 0.96180 0.94844 0.90313 1.21298 1.30509 1.11680 0.90587 0.92204 1.25016 0.95514 0.95136 0.99020 1.69984 1.37575 1.23299 1.23042 0.86618 0.78605 0.79695 0.83563 1.19773 1.21312 1.21203 1.22170 0.99866 0.94701 0.89164 1.60796 1.17573 1.52387 1.00442 1.21175 1.00145 0.90995 0.88889 0.89160 1.22091 0.95593 0.98130 1.02211 1.21553 0.96863 0.98826 0.98925 1.21440 0.99029 0.95928 0.98413 1.21443 0.91747 0.98365 1.03155 1.30217 1.11966 1.16892 1.07560 0.85361 1.07983 0.76212 0.77923 0.77073 1.30514 1.11607 1.17957 1.21959 1.93648 1.81097 1.73504 1.40534 1.93572 1.33830 1.80231 1.87008 0.91737 0.94900 0.94310 0.94363 0.92096 0.93250 0.96658 0.97062 0.93329 0.91440 0.95584 0.83081 0.91505 0.91041 0.91669 0.91366 0.91922 0.91489 0.91105 0.88900 0.85483 0.85727 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 3 C -0.12 -2.52 8.06 37.16 0.30 -2.22 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.50 -14.08 7.65 -34.44 -0.26 -14.35 16 6 H 0.06 1.64 5.68 -52.49 -0.30 1.34 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 9 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.07 1.21 4.45 -3.83 -0.02 1.19 16 14 N -0.68 -9.47 3.44 -106.73 -0.37 -9.84 16 15 C 0.10 1.13 2.30 -67.71 -0.16 0.97 16 16 H 0.09 1.10 7.80 -51.93 -0.40 0.69 16 17 C -0.14 -1.35 5.52 -26.73 -0.15 -1.49 16 18 C -0.12 -1.05 5.67 -26.73 -0.15 -1.20 16 19 C -0.11 -0.75 5.92 -26.74 -0.16 -0.90 16 20 C -0.11 -0.78 4.67 -26.73 -0.12 -0.90 16 21 C -0.56 -4.77 2.44 -26.73 -0.07 -4.84 16 22 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 23 S 2.43 26.29 4.85 -107.50 -0.52 25.77 16 24 C -0.67 -4.33 10.01 101.05 1.01 -3.31 16 25 O -0.89 -13.08 16.10 -57.83 -0.93 -14.01 16 26 O -0.95 -14.05 18.10 -57.83 -1.05 -15.10 16 27 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 28 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.20 6.98 -51.93 -0.36 0.83 16 32 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.25 8.05 -51.93 -0.42 0.84 16 37 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 38 H 0.35 4.51 3.61 -39.30 -0.14 4.37 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.77 7.45 -51.93 -0.39 0.39 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.65 6.26 -51.93 -0.32 0.32 16 43 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.32 6.39 -51.93 -0.33 -0.02 16 46 H 0.09 0.79 7.21 -51.93 -0.37 0.41 16 47 H 0.13 0.58 6.77 -51.92 -0.35 0.23 16 48 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.12 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -35.16 372.63 -9.91 -45.07 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.60 Total: 0.35 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 0.22 Total: -28.25 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.37 Total: -36.51 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.98 Total: -29.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 26.29 SS G_CDS: -0.52 Total: 25.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.16 -9.91 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.780 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds