Wall clock time and date at job start Tue Mar 31 2020 11:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99926 * 2 1 3 5 5 C 1.50702 * 109.47159 * 299.99938 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47035 * 239.99696 * 2 1 3 14 14 N 1.46902 * 109.46988 * 60.00401 * 13 2 1 15 15 C 1.46901 * 110.99844 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.47269 * 324.99652 * 15 14 13 17 17 C 1.52999 * 109.47147 * 85.00114 * 15 14 13 18 18 C 1.53004 * 109.47251 * 59.99721 * 17 15 14 19 19 C 1.52995 * 109.47239 * 60.00079 * 18 17 15 20 20 C 1.52996 * 109.47243 * 300.00314 * 19 18 17 21 21 C 1.53002 * 109.47149 * 204.99677 * 15 14 13 22 22 H 1.08996 * 109.47273 * 180.02562 * 21 15 14 23 23 S 1.81406 * 109.47062 * 60.00078 * 21 15 14 24 24 C 1.81392 * 101.92292 * 185.00026 * 23 21 15 25 25 O 1.42097 * 108.57729 * 299.49002 * 23 21 15 26 26 O 1.42099 * 108.57597 * 70.51207 * 23 21 15 27 27 H 1.08994 * 109.47333 * 300.00159 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00026 * 1 2 3 29 29 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46610 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47486 * 299.99594 * 3 2 1 32 32 H 1.09003 * 109.47277 * 60.00121 * 3 2 1 33 33 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47405 * 59.99971 * 4 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46640 * 179.97438 * 13 2 1 37 37 H 1.08994 * 109.47663 * 300.00253 * 13 2 1 38 38 H 1.00893 * 111.00113 * 303.94754 * 14 13 2 39 39 H 1.08996 * 109.47363 * 179.97438 * 17 15 14 40 40 H 1.09000 * 109.46858 * 299.99770 * 17 15 14 41 41 H 1.08994 * 109.47170 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.46932 * 300.00258 * 18 17 15 43 43 H 1.09010 * 109.47031 * 59.99628 * 19 18 17 44 44 H 1.08995 * 109.47776 * 179.97438 * 19 18 17 45 45 H 1.09004 * 109.47615 * 179.97438 * 20 19 18 46 46 H 1.08996 * 109.47046 * 299.99893 * 20 19 18 47 47 H 1.09006 * 109.46999 * 59.99902 * 24 23 21 48 48 H 1.08997 * 109.47496 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.47134 * 300.00443 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8660 -0.4852 3.7320 8 7 2.6221 -1.5544 3.8527 9 14 1.2370 0.3909 5.2571 10 1 0.4126 1.5581 4.8529 11 1 0.4091 -0.5450 6.0597 12 1 2.3885 0.8559 6.0714 13 6 2.0401 -0.7213 -1.2492 14 7 1.5504 -0.0288 -2.4486 15 6 2.0219 -0.6946 -3.6702 16 1 3.0240 -1.0903 -3.5047 17 6 1.0729 -1.8411 -4.0249 18 6 -0.3336 -1.2856 -4.2572 19 6 -0.3002 -0.2771 -5.4072 20 6 0.6488 0.8694 -5.0527 21 6 2.0554 0.3139 -4.8203 22 1 2.4048 -0.1802 -5.7268 23 16 3.1806 1.6734 -4.3999 24 6 2.9489 2.7992 -5.8031 25 8 2.7009 2.3108 -3.2240 26 8 4.5139 1.1827 -4.4284 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1301 -0.7209 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 2.8534 -1.8880 4.7337 36 1 3.1300 -0.7209 -1.2493 37 1 1.6768 -1.7489 -1.2492 38 1 0.5440 0.0413 -2.4402 39 1 1.4225 -2.3349 -4.9316 40 1 1.0491 -2.5596 -3.2056 41 1 -1.0098 -2.1024 -4.5095 42 1 -0.6834 -0.7916 -3.3508 43 1 0.0498 -0.7711 -6.3137 44 1 -1.3022 0.1184 -5.5731 45 1 0.6731 1.5878 -5.8721 46 1 0.2991 1.3635 -4.1462 47 1 1.9046 3.1080 -5.8526 48 1 3.5819 3.6769 -5.6732 49 1 3.2210 2.2890 -6.7271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348248535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:32 Heat of formation + Delta-G solvation = -116.365672 kcal Electronic energy + Delta-G solvation = -26998.769766 eV Core-core repulsion = 23472.248003 eV Total energy + Delta-G solvation = -3526.521763 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54088 -38.39829 -37.71580 -36.66644 -35.03171 -33.81951 -32.20859 -30.42299 -29.96166 -28.74657 -27.84030 -26.60657 -24.40233 -23.92931 -23.30963 -20.13965 -19.66073 -19.38400 -18.32099 -17.85989 -16.96293 -16.69259 -16.63681 -16.54831 -15.92209 -15.68894 -15.05173 -15.01226 -14.70548 -14.44530 -14.26965 -13.92719 -13.87250 -13.77697 -13.64628 -13.36429 -12.99360 -12.96929 -12.83643 -12.75964 -12.71974 -12.63433 -12.48850 -12.34390 -12.20475 -12.12834 -12.00938 -11.87028 -11.62628 -11.37656 -11.29272 -11.13181 -10.84043 -10.71077 -10.68963 -10.50580 -9.22195 -8.13536 -6.20348 -0.70803 1.39494 1.40618 1.53362 2.11359 2.44083 2.95353 3.15448 3.20201 3.35736 3.65272 3.72590 4.00516 4.09493 4.17192 4.19382 4.23791 4.25275 4.35885 4.40691 4.43439 4.52011 4.56368 4.69037 4.75067 4.84327 4.93094 4.96318 5.00642 5.07939 5.12436 5.15862 5.24943 5.26409 5.28475 5.31880 5.36013 5.53013 5.54965 5.58388 5.60402 5.76669 5.91023 5.93764 6.05306 6.38161 6.58066 6.94551 7.46669 8.99276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.003762 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.897686 B = 7441.092289 C = 8118.746365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.107 4.107 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.082 3.918 14 N -0.676 5.676 15 C 0.090 3.910 16 H 0.071 0.929 17 C -0.136 4.136 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.539 4.539 22 H 0.165 0.835 23 S 2.406 3.594 24 C -0.648 4.648 25 O -0.946 6.946 26 O -1.006 7.006 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.016 0.984 31 H 0.079 0.921 32 H 0.034 0.966 33 H -0.022 1.022 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.026 0.974 38 H 0.353 0.647 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.156 0.844 48 H 0.129 0.871 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 5.134 -27.761 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.164 4.164 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.210 1.210 13 C -0.048 4.048 14 N -0.311 5.311 15 C -0.022 4.022 16 H 0.089 0.911 17 C -0.176 4.176 18 C -0.164 4.164 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.650 4.650 22 H 0.182 0.818 23 S 2.594 3.406 24 C -0.800 4.800 25 O -0.943 6.943 26 O -1.003 7.003 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.053 0.947 33 H -0.004 1.004 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.177 0.823 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.128 0.872 46 H 0.096 0.904 47 H 0.174 0.826 48 H 0.147 0.853 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.006 5.629 -26.875 28.107 hybrid contribution -0.472 -1.076 0.940 1.504 sum -6.478 4.553 -25.935 27.117 Atomic orbital electron populations 1.21656 0.94287 1.00464 1.01196 1.20474 0.96060 0.95837 0.93047 1.21522 0.98406 0.95640 1.00840 1.19016 0.93768 0.94101 0.92903 1.21650 1.30185 1.11739 0.91448 0.91644 1.25939 0.95742 0.95908 1.02606 1.70128 1.39005 1.24996 1.23926 0.85499 0.78117 0.78819 0.79243 1.18462 1.20531 1.20956 1.21815 0.98509 0.94661 0.89782 1.60693 1.17978 1.52368 1.00061 1.21289 0.99592 0.92594 0.88677 0.91059 1.22047 0.96193 0.97019 1.02339 1.21590 0.95746 0.99666 0.99391 1.21449 0.99772 0.95141 0.98005 1.21602 0.90182 0.99323 1.04103 1.30046 1.12544 1.15037 1.07406 0.81753 1.08068 0.75467 0.78904 0.78194 1.30239 1.13792 1.16366 1.19562 1.93583 1.81430 1.74619 1.44620 1.93505 1.37058 1.81487 1.88275 0.93483 0.91427 0.94104 0.96473 0.90234 0.94718 1.00363 0.99497 0.93198 0.93631 0.95541 0.82279 0.89521 0.93030 0.90794 0.92733 0.90134 0.90045 0.87218 0.90361 0.82604 0.85259 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 7.89 71.99 0.57 -3.89 16 2 C -0.05 -2.31 0.60 -52.18 -0.03 -2.34 16 3 C -0.11 -4.69 8.06 71.98 0.58 -4.11 16 4 C 0.04 2.18 4.04 29.85 0.12 2.30 16 5 C -0.51 -29.68 7.65 25.60 0.20 -29.49 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -59.33 13.29 21.45 0.28 -59.04 16 9 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 10 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 13 C 0.08 3.01 4.45 86.30 0.38 3.40 16 14 N -0.68 -19.00 3.44 -491.58 -1.69 -20.69 16 15 C 0.09 1.97 2.30 44.92 0.10 2.07 16 16 H 0.07 1.82 7.80 -2.39 -0.02 1.80 16 17 C -0.14 -2.40 5.52 30.60 0.17 -2.23 16 18 C -0.13 -1.79 5.67 30.59 0.17 -1.61 16 19 C -0.11 -0.94 5.92 30.59 0.18 -0.76 16 20 C -0.11 -1.14 4.67 30.59 0.14 -1.00 16 21 C -0.54 -7.78 2.44 30.60 0.07 -7.71 16 22 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 23 S 2.41 49.83 4.85 -56.49 -0.27 49.55 16 24 C -0.65 -5.62 10.01 113.37 1.14 -4.48 16 25 O -0.95 -28.04 16.10 -127.37 -2.05 -30.09 16 26 O -1.01 -30.62 18.10 -127.37 -2.30 -32.93 16 27 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 28 H 0.07 2.05 6.57 -2.39 -0.02 2.04 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 3.18 6.98 -2.39 -0.02 3.16 16 32 H 0.03 1.58 6.62 -2.39 -0.02 1.56 16 33 H -0.02 -1.35 8.14 -2.38 -0.02 -1.37 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 36 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 37 H 0.03 0.96 7.44 -2.39 -0.02 0.94 16 38 H 0.35 8.88 3.61 -89.70 -0.32 8.56 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.92 6.26 -2.39 -0.01 0.91 16 43 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.11 0.29 6.39 -2.38 -0.02 0.27 16 46 H 0.08 1.07 7.21 -2.39 -0.02 1.06 16 47 H 0.16 0.53 6.77 -2.39 -0.02 0.51 16 48 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -82.12 372.63 0.85 -81.27 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.60 Total: 13.56 kcal Atomic # 6 Polarization: -53.98 SS G_CDS: 4.26 Total: -49.72 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.41 Total: -79.73 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -4.36 Total: -63.02 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 49.83 SS G_CDS: -0.27 Total: 49.55 kcal Total: -82.12 0.85 -81.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.094 kcal (2) G-P(sol) polarization free energy of solvation -82.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds