Wall clock time and date at job start Tue Mar 31 2020 11:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46966 * 2 1 4 4 C 1.52999 * 109.46741 * 143.81612 * 3 2 1 5 5 C 1.53000 * 109.46942 * 23.81796 * 3 2 1 6 6 N 1.46500 * 109.47215 * 263.81742 * 3 2 1 7 7 C 1.46491 * 120.00150 * 103.12879 * 6 3 2 8 8 C 1.50702 * 109.47127 * 265.61761 * 7 6 3 9 9 H 1.08003 * 120.00020 * 4.75923 * 8 7 6 10 10 C 1.37880 * 120.00273 * 184.76476 * 8 7 6 11 11 N 1.31516 * 119.99673 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00213 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47117 * 89.99905 * 12 10 8 14 14 H 1.48499 * 109.47150 * 209.99873 * 12 10 8 15 15 H 1.48497 * 109.46968 * 329.99969 * 12 10 8 16 16 C 1.34777 * 119.99838 * 283.12672 * 6 3 2 17 17 O 1.21550 * 120.00346 * 216.08703 * 16 6 3 18 18 C 1.47847 * 119.99856 * 36.08763 * 16 6 3 19 19 C 1.39599 * 120.13782 * 330.24461 * 18 16 6 20 20 C 1.37992 * 119.89885 * 179.97438 * 19 18 16 21 21 C 1.38140 * 120.10843 * 0.06197 * 20 19 18 22 22 C 1.38757 * 120.27260 * 359.97438 * 21 20 19 23 23 C 1.37711 * 120.18387 * 359.96882 * 22 21 20 24 24 C 1.51114 * 107.25541 * 179.97438 * 22 21 20 25 25 O 1.43928 * 105.95446 * 17.71920 * 24 22 21 26 26 C 1.43929 * 104.97283 * 331.48462 * 25 24 22 27 27 H 1.09004 * 109.46932 * 183.48477 * 1 2 3 28 28 H 1.09001 * 109.47039 * 303.48415 * 1 2 3 29 29 H 1.08998 * 109.47254 * 63.48555 * 1 2 3 30 30 H 1.09002 * 109.47084 * 240.00337 * 2 1 3 31 31 H 1.08997 * 109.47241 * 119.99885 * 2 1 3 32 32 H 1.09005 * 109.46936 * 212.57364 * 4 3 2 33 33 H 1.08993 * 109.47577 * 332.57706 * 4 3 2 34 34 H 1.09000 * 109.47396 * 92.58118 * 4 3 2 35 35 H 1.08999 * 109.46785 * 301.89563 * 5 3 2 36 36 H 1.08995 * 109.47146 * 61.90220 * 5 3 2 37 37 H 1.09000 * 109.46902 * 181.90160 * 5 3 2 38 38 H 1.09003 * 109.47248 * 25.61507 * 7 6 3 39 39 H 1.08997 * 109.47590 * 145.61835 * 7 6 3 40 40 H 0.96996 * 119.99718 * 180.02562 * 11 10 8 41 41 H 1.08004 * 120.04708 * 0.03662 * 19 18 16 42 42 H 1.08003 * 119.94938 * 180.02562 * 20 19 18 43 43 H 1.07999 * 120.09076 * 179.72671 * 23 22 21 44 44 H 1.09000 * 110.15162 * 136.84014 * 24 22 21 45 45 H 1.08997 * 110.15233 * 258.59598 * 24 22 21 46 46 H 1.09000 * 110.15458 * 147.64712 * 26 25 24 47 47 H 1.08994 * 110.14962 * 269.32793 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.3076 1.5353 0.8516 5 6 0.9657 2.3632 0.5825 6 7 2.3430 1.8534 -1.3732 7 6 1.4172 2.7278 -2.0973 8 6 0.4768 1.8892 -2.9240 9 1 0.5094 0.8120 -2.8527 10 6 -0.4250 2.4970 -3.7715 11 7 -0.4650 3.8087 -3.8580 12 14 -1.5902 1.4574 -4.7968 13 1 -2.8430 1.2213 -4.0355 14 1 -1.9060 2.1691 -6.0613 15 1 -0.9477 0.1555 -5.1087 16 6 3.4735 1.4269 -1.9702 17 8 4.0759 2.1627 -2.7273 18 6 3.9810 0.0640 -1.7043 19 6 3.7361 -0.5474 -0.4734 20 6 4.2116 -1.8198 -0.2306 21 6 4.9302 -2.4882 -1.2028 22 6 5.1777 -1.8858 -2.4280 23 6 4.7076 -0.6168 -2.6831 24 6 5.9772 -2.8652 -3.2558 25 8 5.7996 -4.1492 -2.6302 26 6 5.5702 -3.8569 -1.2397 27 1 -0.3633 -1.0258 0.0625 28 1 -0.3633 0.5670 0.8571 29 1 -0.3634 0.4588 -0.9195 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3532 2.5136 1.3301 33 1 3.2900 0.7578 1.6153 34 1 4.1829 1.4005 0.2162 35 1 0.0517 2.2718 -0.0043 36 1 0.7645 2.0788 1.6153 37 1 1.3157 3.3950 0.5514 38 1 0.8441 3.3204 -1.3842 39 1 1.9816 3.3925 -2.7513 40 1 -1.0997 4.2363 -4.4539 41 1 3.1744 -0.0256 0.2873 42 1 4.0222 -2.2937 0.7212 43 1 4.9049 -0.1476 -3.6357 44 1 5.5988 -2.8897 -4.2777 45 1 7.0312 -2.5878 -3.2514 46 1 4.8982 -4.5975 -0.8062 47 1 6.5157 -3.8452 -0.6976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348526334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:18 Heat of formation + Delta-G solvation = 33.397678 kcal Electronic energy + Delta-G solvation = -28443.766614 eV Core-core repulsion = 24788.295126 eV Total energy + Delta-G solvation = -3655.471488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42219 -39.99888 -37.34099 -36.89783 -33.52270 -32.06200 -31.72270 -31.48201 -29.94421 -28.21815 -28.02052 -26.55718 -24.76923 -23.86727 -22.97973 -21.63980 -21.36468 -20.68482 -17.93111 -16.79752 -16.59565 -16.41122 -16.23951 -16.04693 -15.29684 -15.15950 -14.53587 -14.39868 -14.26780 -14.14535 -13.81542 -13.59710 -13.12007 -12.83749 -12.51605 -12.48144 -12.37616 -12.30044 -12.13426 -11.82101 -11.60274 -11.24171 -11.19881 -11.10585 -11.03826 -10.74558 -10.66450 -10.44096 -10.38394 -10.09661 -10.06787 -9.85209 -9.59531 -9.18597 -8.80459 -8.46596 -8.31144 -7.54591 -6.08185 -4.13808 0.99657 1.40258 3.08818 3.25742 3.33678 3.37229 3.69356 3.81121 3.96035 4.20411 4.39681 4.58952 4.83937 4.86887 4.96071 5.01352 5.11962 5.20495 5.23306 5.25703 5.31980 5.45095 5.54314 5.57912 5.60907 5.69352 5.72642 5.81021 5.96044 6.02610 6.05749 6.06145 6.10976 6.22128 6.24796 6.34382 6.41743 6.49709 6.61630 6.65089 6.68413 6.90050 6.90465 7.11624 7.44237 7.60288 7.90770 8.20039 8.37937 8.76337 8.96542 9.51590 10.98765 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.004912 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.271528 B = 5699.169918 C = 6460.260620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.167 3.833 4 C -0.179 4.179 5 C -0.150 4.150 6 N -0.607 5.607 7 C 0.243 3.757 8 C -0.529 4.529 9 H 0.060 0.940 10 C 0.064 3.936 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.576 3.424 17 O -0.527 6.527 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.037 4.037 24 C 0.095 3.905 25 O -0.364 6.364 26 C 0.091 3.909 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.201 0.799 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 -11.140 11.232 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.080 3.920 4 C -0.237 4.237 5 C -0.207 4.207 6 N -0.340 5.340 7 C 0.124 3.876 8 C -0.568 4.568 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.719 3.281 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.364 3.636 17 O -0.404 6.404 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.154 4.154 23 C -0.056 4.056 24 C 0.019 3.981 25 O -0.282 6.282 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.217 0.783 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.396 -10.762 10.604 17.285 hybrid contribution -0.758 -0.481 -0.651 1.109 sum 7.638 -11.244 9.953 16.847 Atomic orbital electron populations 1.22154 0.95294 1.00755 1.03970 1.22838 0.97263 0.96253 1.01714 1.20444 0.94342 0.94409 0.82768 1.22897 0.98089 1.02480 1.00195 1.22252 0.99831 0.98624 0.99984 1.47946 1.21667 1.51630 1.12776 1.19419 0.87167 0.89357 0.91626 1.21514 1.17939 0.93467 1.23878 0.92192 1.24917 0.97444 0.94892 0.96583 1.69933 1.36600 1.08210 1.38193 0.86596 0.81098 0.80454 0.79936 1.20543 1.21115 1.19909 1.17896 0.80433 0.85281 0.79959 1.90696 1.55429 1.55938 1.38340 1.20401 1.01015 0.96518 0.95274 1.24059 0.95702 0.95291 0.99207 1.20291 0.99627 0.95025 0.98798 1.21192 0.98589 0.96857 0.95126 1.20829 1.01827 0.96020 0.96765 1.20417 0.93728 0.92139 0.99324 1.21707 0.98504 0.80971 0.96956 1.89055 1.93061 1.26260 1.19843 1.21753 0.99416 0.93260 0.84093 0.93969 0.92586 0.89720 0.89781 0.91902 0.91579 0.91006 0.91244 0.89384 0.92226 0.92251 0.93947 0.94005 0.92695 0.78302 0.85667 0.84966 0.88482 0.90634 0.88601 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.60 37.16 0.32 -2.14 16 2 C -0.14 -2.08 3.92 -26.73 -0.10 -2.18 16 3 C 0.17 2.63 0.89 -131.82 -0.12 2.52 16 4 C -0.18 -2.34 7.62 37.16 0.28 -2.06 16 5 C -0.15 -2.27 5.60 37.16 0.21 -2.06 16 6 N -0.61 -12.54 2.36 -161.28 -0.38 -12.92 16 7 C 0.24 6.04 4.85 -5.20 -0.03 6.02 16 8 C -0.53 -14.06 8.34 -34.44 -0.29 -14.35 16 9 H 0.06 1.59 7.22 -52.48 -0.38 1.22 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 12 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.58 12.36 5.77 -12.33 -0.07 12.29 16 17 O -0.53 -13.19 16.67 5.32 0.09 -13.10 16 18 C -0.13 -2.28 4.86 -104.94 -0.51 -2.79 16 19 C -0.13 -1.81 4.40 -39.16 -0.17 -1.98 16 20 C -0.12 -1.47 10.03 -39.71 -0.40 -1.87 16 21 C -0.12 -1.51 6.33 -104.25 -0.66 -2.17 16 22 C -0.15 -2.21 6.31 -104.42 -0.66 -2.87 16 23 C -0.04 -0.62 9.59 -39.26 -0.38 -1.00 16 24 C 0.09 1.14 7.63 36.21 0.28 1.42 16 25 O -0.36 -4.65 11.72 -35.23 -0.41 -5.07 16 26 C 0.09 0.97 7.63 36.22 0.28 1.25 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.73 6.23 -51.93 -0.32 0.41 16 29 H 0.08 1.57 6.05 -51.93 -0.31 1.26 16 30 H 0.08 1.42 5.03 -51.93 -0.26 1.16 16 31 H 0.06 0.71 6.41 -51.93 -0.33 0.38 16 32 H 0.07 0.81 7.80 -51.93 -0.41 0.41 16 33 H 0.07 0.71 6.75 -51.93 -0.35 0.36 16 34 H 0.07 1.02 4.82 -51.93 -0.25 0.77 16 35 H 0.09 1.53 5.42 -51.93 -0.28 1.25 16 36 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 37 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 38 H 0.04 1.04 5.43 -51.93 -0.28 0.76 16 39 H 0.04 1.21 7.48 -51.93 -0.39 0.82 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 41 H 0.20 2.59 0.39 -114.81 -0.05 2.55 16 42 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 43 H 0.13 2.24 7.92 -52.49 -0.42 1.83 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -31.64 352.11 -8.30 -39.94 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.50 Total: 4.79 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.12 Total: -10.30 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.36 Total: -37.76 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.32 Total: -18.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.64 -8.30 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348526334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.336 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds