Wall clock time and date at job start Tue Mar 31 2020 11:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46966 * 2 1 4 4 C 1.52999 * 109.46741 * 143.81612 * 3 2 1 5 5 C 1.53000 * 109.46942 * 23.81796 * 3 2 1 6 6 N 1.46500 * 109.47215 * 263.81742 * 3 2 1 7 7 C 1.46491 * 120.00150 * 103.12879 * 6 3 2 8 8 C 1.50702 * 109.47127 * 265.61761 * 7 6 3 9 9 H 1.08003 * 120.00020 * 4.75923 * 8 7 6 10 10 C 1.37880 * 120.00273 * 184.76476 * 8 7 6 11 11 N 1.31516 * 119.99673 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00213 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47117 * 89.99905 * 12 10 8 14 14 H 1.48499 * 109.47150 * 209.99873 * 12 10 8 15 15 H 1.48497 * 109.46968 * 329.99969 * 12 10 8 16 16 C 1.34777 * 119.99838 * 283.12672 * 6 3 2 17 17 O 1.21550 * 120.00346 * 216.08703 * 16 6 3 18 18 C 1.47847 * 119.99856 * 36.08763 * 16 6 3 19 19 C 1.39599 * 120.13782 * 330.24461 * 18 16 6 20 20 C 1.37992 * 119.89885 * 179.97438 * 19 18 16 21 21 C 1.38140 * 120.10843 * 0.06197 * 20 19 18 22 22 C 1.38757 * 120.27260 * 359.97438 * 21 20 19 23 23 C 1.37711 * 120.18387 * 359.96882 * 22 21 20 24 24 C 1.51114 * 107.25541 * 179.97438 * 22 21 20 25 25 O 1.43928 * 105.95446 * 17.71920 * 24 22 21 26 26 C 1.43929 * 104.97283 * 331.48462 * 25 24 22 27 27 H 1.09004 * 109.46932 * 183.48477 * 1 2 3 28 28 H 1.09001 * 109.47039 * 303.48415 * 1 2 3 29 29 H 1.08998 * 109.47254 * 63.48555 * 1 2 3 30 30 H 1.09002 * 109.47084 * 240.00337 * 2 1 3 31 31 H 1.08997 * 109.47241 * 119.99885 * 2 1 3 32 32 H 1.09005 * 109.46936 * 212.57364 * 4 3 2 33 33 H 1.08993 * 109.47577 * 332.57706 * 4 3 2 34 34 H 1.09000 * 109.47396 * 92.58118 * 4 3 2 35 35 H 1.08999 * 109.46785 * 301.89563 * 5 3 2 36 36 H 1.08995 * 109.47146 * 61.90220 * 5 3 2 37 37 H 1.09000 * 109.46902 * 181.90160 * 5 3 2 38 38 H 1.09003 * 109.47248 * 25.61507 * 7 6 3 39 39 H 1.08997 * 109.47590 * 145.61835 * 7 6 3 40 40 H 0.96996 * 119.99718 * 180.02562 * 11 10 8 41 41 H 1.08004 * 120.04708 * 0.03662 * 19 18 16 42 42 H 1.08003 * 119.94938 * 180.02562 * 20 19 18 43 43 H 1.07999 * 120.09076 * 179.72671 * 23 22 21 44 44 H 1.09000 * 110.15162 * 136.84014 * 24 22 21 45 45 H 1.08997 * 110.15233 * 258.59598 * 24 22 21 46 46 H 1.09000 * 110.15458 * 147.64712 * 26 25 24 47 47 H 1.08994 * 110.14962 * 269.32793 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.3076 1.5353 0.8516 5 6 0.9657 2.3632 0.5825 6 7 2.3430 1.8534 -1.3732 7 6 1.4172 2.7278 -2.0973 8 6 0.4768 1.8892 -2.9240 9 1 0.5094 0.8120 -2.8527 10 6 -0.4250 2.4970 -3.7715 11 7 -0.4650 3.8087 -3.8580 12 14 -1.5902 1.4574 -4.7968 13 1 -2.8430 1.2213 -4.0355 14 1 -1.9060 2.1691 -6.0613 15 1 -0.9477 0.1555 -5.1087 16 6 3.4735 1.4269 -1.9702 17 8 4.0759 2.1627 -2.7273 18 6 3.9810 0.0640 -1.7043 19 6 3.7361 -0.5474 -0.4734 20 6 4.2116 -1.8198 -0.2306 21 6 4.9302 -2.4882 -1.2028 22 6 5.1777 -1.8858 -2.4280 23 6 4.7076 -0.6168 -2.6831 24 6 5.9772 -2.8652 -3.2558 25 8 5.7996 -4.1492 -2.6302 26 6 5.5702 -3.8569 -1.2397 27 1 -0.3633 -1.0258 0.0625 28 1 -0.3633 0.5670 0.8571 29 1 -0.3634 0.4588 -0.9195 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3532 2.5136 1.3301 33 1 3.2900 0.7578 1.6153 34 1 4.1829 1.4005 0.2162 35 1 0.0517 2.2718 -0.0043 36 1 0.7645 2.0788 1.6153 37 1 1.3157 3.3950 0.5514 38 1 0.8441 3.3204 -1.3842 39 1 1.9816 3.3925 -2.7513 40 1 -1.0997 4.2363 -4.4539 41 1 3.1744 -0.0256 0.2873 42 1 4.0222 -2.2937 0.7212 43 1 4.9049 -0.1476 -3.6357 44 1 5.5988 -2.8897 -4.2777 45 1 7.0312 -2.5878 -3.2514 46 1 4.8982 -4.5975 -0.8062 47 1 6.5157 -3.8452 -0.6976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348526334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:18 Heat of formation + Delta-G solvation = 13.508337 kcal Electronic energy + Delta-G solvation = -28444.629081 eV Core-core repulsion = 24788.295126 eV Total energy + Delta-G solvation = -3656.333955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68434 -41.10056 -38.92105 -38.03428 -35.41802 -33.81195 -32.91667 -32.58545 -31.17950 -29.56902 -29.16843 -28.11241 -26.00641 -25.03716 -24.69742 -22.73451 -22.62113 -22.06289 -19.29204 -18.60371 -18.07099 -17.64528 -17.35559 -17.10131 -16.84886 -16.56457 -16.19327 -15.63482 -15.53780 -15.37402 -15.10865 -14.80623 -14.40658 -14.20564 -13.91788 -13.73443 -13.67083 -13.46456 -13.22673 -13.20937 -13.05324 -12.93735 -12.73797 -12.41431 -12.33968 -12.23439 -12.15713 -11.96356 -11.80463 -11.56070 -11.53630 -11.10389 -10.89290 -10.86038 -10.60502 -9.91806 -9.45065 -9.21817 -8.20059 -6.33936 -0.18877 0.30076 1.33693 1.36139 1.45325 1.62161 2.20908 2.39236 2.69896 2.92622 3.08464 3.17302 3.60350 3.63222 3.72045 3.82328 3.91394 3.95676 4.28485 4.38294 4.41020 4.44895 4.49526 4.52394 4.58763 4.68190 4.72762 4.74274 4.79314 4.85880 4.91842 4.95003 4.98059 5.10709 5.15330 5.20692 5.24627 5.24982 5.28113 5.35966 5.41039 5.51097 5.64000 5.66376 5.69068 5.84114 5.95385 6.11230 6.70203 6.80469 7.15961 7.37669 8.85832 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.004912 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.271528 B = 5699.169918 C = 6460.260620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.153 3.847 4 C -0.178 4.178 5 C -0.147 4.147 6 N -0.610 5.610 7 C 0.260 3.740 8 C -0.529 4.529 9 H 0.056 0.944 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.956 3.044 13 H -0.262 1.262 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.567 3.433 17 O -0.587 6.587 18 C -0.157 4.157 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.110 4.110 22 C -0.165 4.165 23 C -0.061 4.061 24 C 0.096 3.904 25 O -0.378 6.378 26 C 0.090 3.910 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.042 0.958 39 H -0.014 1.014 40 H 0.265 0.735 41 H 0.216 0.784 42 H 0.175 0.825 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.122 0.878 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 -15.030 14.735 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.177 4.177 3 C 0.069 3.931 4 C -0.234 4.234 5 C -0.204 4.204 6 N -0.343 5.343 7 C 0.139 3.861 8 C -0.567 4.567 9 H 0.074 0.926 10 C -0.187 4.187 11 N -0.567 5.567 12 Si 0.781 3.219 13 H -0.187 1.187 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.358 3.642 17 O -0.468 6.468 18 C -0.160 4.160 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.166 4.166 23 C -0.080 4.080 24 C 0.020 3.980 25 O -0.297 6.297 26 C 0.014 3.986 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.004 0.996 40 H 0.074 0.926 41 H 0.231 0.769 42 H 0.192 0.808 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.139 0.861 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.324 -14.684 14.153 22.028 hybrid contribution -0.688 0.711 -1.694 1.961 sum 7.636 -13.973 12.459 20.219 Atomic orbital electron populations 1.22099 0.95659 1.01677 1.02497 1.22827 0.96908 0.95045 1.02906 1.20939 0.96262 0.95653 0.80212 1.22898 0.95376 1.04813 1.00333 1.22235 0.98207 0.97890 1.02073 1.47950 1.20643 1.50954 1.14716 1.18890 0.86817 0.89278 0.91077 1.21681 1.17856 0.93276 1.23924 0.92567 1.25743 0.99171 0.95978 0.97810 1.70059 1.37603 1.09832 1.39184 0.85586 0.79471 0.78508 0.78339 1.18710 1.20996 1.20005 1.18643 0.80091 0.86616 0.78839 1.90640 1.57446 1.57776 1.40967 1.20106 1.03534 0.94676 0.97718 1.24195 0.95213 0.96079 0.97667 1.20763 0.97713 0.93723 1.00399 1.21680 0.97388 0.97773 0.94201 1.21023 1.01938 0.95172 0.98436 1.20340 0.95266 0.93712 0.98714 1.21772 0.99168 0.80364 0.96739 1.89045 1.93243 1.26213 1.21183 1.22039 1.01055 0.92149 0.83347 0.92218 0.90561 0.94283 0.92112 0.86747 0.90934 0.86067 0.93092 0.92190 0.87661 0.93759 0.94036 0.99576 0.92584 0.76892 0.80756 0.87372 0.88364 0.88856 0.86053 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 8.60 71.98 0.62 -3.85 16 2 C -0.14 -3.63 3.92 30.60 0.12 -3.51 16 3 C 0.15 4.68 0.89 3.61 0.00 4.68 16 4 C -0.18 -4.12 7.62 71.98 0.55 -3.57 16 5 C -0.15 -4.30 5.60 71.98 0.40 -3.90 16 6 N -0.61 -26.56 2.36 -782.45 -1.85 -28.41 16 7 C 0.26 13.96 4.85 85.64 0.42 14.38 16 8 C -0.53 -29.65 8.34 25.60 0.21 -29.44 16 9 H 0.06 3.13 7.22 -2.91 -0.02 3.11 16 10 C 0.01 0.68 5.46 84.66 0.46 1.15 16 11 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 12 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 13 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 16 C 0.57 26.07 5.77 86.79 0.50 26.57 16 17 O -0.59 -32.42 16.67 -3.87 -0.06 -32.49 16 18 C -0.16 -5.70 4.86 -20.07 -0.10 -5.80 16 19 C -0.12 -2.99 4.40 22.54 0.10 -2.89 16 20 C -0.11 -2.13 10.03 22.19 0.22 -1.91 16 21 C -0.11 -2.43 6.33 -19.63 -0.12 -2.55 16 22 C -0.17 -4.57 6.31 -19.73 -0.12 -4.70 16 23 C -0.06 -2.15 9.59 22.48 0.22 -1.93 16 24 C 0.10 2.17 7.63 71.37 0.54 2.71 16 25 O -0.38 -8.51 11.72 -148.98 -1.75 -10.26 16 26 C 0.09 1.49 7.63 71.37 0.54 2.03 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.08 1.75 6.23 -2.39 -0.01 1.74 16 29 H 0.04 1.44 6.05 -2.39 -0.01 1.42 16 30 H 0.06 1.93 5.03 -2.39 -0.01 1.92 16 31 H 0.11 1.83 6.41 -2.39 -0.02 1.82 16 32 H 0.07 1.61 7.80 -2.38 -0.02 1.59 16 33 H 0.12 1.63 6.75 -2.39 -0.02 1.61 16 34 H 0.05 1.42 4.82 -2.39 -0.01 1.41 16 35 H 0.06 2.11 5.42 -2.39 -0.01 2.09 16 36 H 0.10 2.09 7.70 -2.39 -0.02 2.07 16 37 H 0.04 1.40 7.67 -2.39 -0.02 1.38 16 38 H 0.04 2.20 5.43 -2.39 -0.01 2.19 16 39 H -0.01 -0.89 7.48 -2.39 -0.02 -0.91 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 41 H 0.22 4.70 0.39 -61.45 -0.02 4.67 16 42 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.11 4.13 7.92 -2.91 -0.02 4.11 16 44 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -77.77 352.11 4.20 -73.58 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.98 Total: 18.85 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.57 Total: -12.54 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -1.56 Total: -83.95 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.81 Total: -42.74 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.77 4.20 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348526334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.087 kcal (2) G-P(sol) polarization free energy of solvation -77.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds