Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 C 1.53001 * 109.47193 * 300.00278 * 3 2 1 5 5 C 1.53000 * 109.46927 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47285 * 60.00212 * 3 2 1 7 7 C 1.46501 * 119.99770 * 68.95406 * 6 3 2 8 8 C 1.50698 * 109.47120 * 79.88652 * 7 6 3 9 9 H 1.08003 * 119.99594 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00506 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00555 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99673 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47095 * 89.99958 * 12 10 8 14 14 H 1.48494 * 109.46916 * 210.00367 * 12 10 8 15 15 H 1.48501 * 109.46930 * 330.00208 * 12 10 8 16 16 C 1.34770 * 120.00320 * 248.95961 * 6 3 2 17 17 O 1.21558 * 119.99859 * 2.08827 * 16 6 3 18 18 C 1.47863 * 120.00426 * 182.09160 * 16 6 3 19 19 C 1.39747 * 120.05804 * 22.22031 * 18 16 6 20 20 C 1.38093 * 120.20253 * 179.71646 * 19 18 16 21 21 C 1.38033 * 120.32366 * 0.56234 * 20 19 18 22 22 C 1.39931 * 120.11929 * 359.72001 * 21 20 19 23 23 C 1.47182 * 120.10435 * 180.02562 * 22 21 20 24 24 C 1.50697 * 119.99873 * 185.79969 * 23 22 21 25 25 O 1.21250 * 119.99713 * 5.80101 * 23 22 21 26 26 C 1.39229 * 120.06154 * 202.49721 * 18 16 6 27 27 H 1.08994 * 109.47196 * 59.99307 * 1 2 3 28 28 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46210 * 299.99627 * 1 2 3 30 30 H 1.09009 * 109.46475 * 240.00042 * 2 1 3 31 31 H 1.08994 * 109.47196 * 120.00692 * 2 1 3 32 32 H 1.08999 * 109.47378 * 173.10964 * 4 3 2 33 33 H 1.09005 * 109.47350 * 293.11472 * 4 3 2 34 34 H 1.09001 * 109.47166 * 53.10922 * 4 3 2 35 35 H 1.09002 * 109.47166 * 299.99838 * 5 3 2 36 36 H 1.08993 * 109.47230 * 60.00175 * 5 3 2 37 37 H 1.08997 * 109.46865 * 179.97438 * 5 3 2 38 38 H 1.09001 * 109.47289 * 319.88779 * 7 6 3 39 39 H 1.08996 * 109.47276 * 199.88680 * 7 6 3 40 40 H 0.96992 * 120.00170 * 179.97438 * 11 10 8 41 41 H 1.08005 * 119.89960 * 0.02562 * 19 18 16 42 42 H 1.08007 * 119.83981 * 180.25600 * 20 19 18 43 43 H 1.07999 * 119.93936 * 179.69138 * 21 20 19 44 44 H 1.09005 * 109.47580 * 5.40294 * 24 23 22 45 45 H 1.09002 * 109.46933 * 125.40504 * 24 23 22 46 46 H 1.09004 * 109.47111 * 245.39924 * 24 23 22 47 47 H 1.07987 * 120.16031 * 359.97438 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 3.5701 1.4424 -0.0006 6 7 1.5518 2.1331 1.1962 7 6 2.0598 1.7569 2.5178 8 6 3.4054 2.3979 2.7399 9 1 3.8390 3.0227 1.9731 10 6 4.0835 2.1860 3.9216 11 7 5.2576 2.7458 4.1157 12 14 3.3337 1.1047 5.2476 13 1 3.7606 -0.3022 5.0391 14 1 3.7916 1.5684 6.5819 15 1 1.8528 1.1884 5.1758 16 6 0.6353 3.1144 1.0808 17 8 0.1856 3.4008 -0.0116 18 6 0.1767 3.8429 2.2831 19 6 0.9734 3.8709 3.4309 20 6 0.5507 4.5552 4.5534 21 6 -0.6661 5.2069 4.5552 22 6 -1.4773 5.1828 3.4153 23 6 -2.7744 5.8783 3.4174 24 6 -3.7037 5.7432 2.2389 25 8 -3.0951 6.5600 4.3674 26 6 -1.0521 4.4974 2.2756 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.7892 3.2208 -1.1897 33 1 1.9904 1.7260 -2.1350 34 1 0.4470 2.0583 -1.3130 35 1 3.9338 0.9285 0.8891 36 1 3.9330 0.9288 -0.8908 37 1 3.9334 2.4701 -0.0011 38 1 2.1601 0.6729 2.5734 39 1 1.3641 2.0972 3.2848 40 1 5.7343 2.5970 4.9471 41 1 1.9249 3.3599 3.4384 42 1 1.1730 4.5764 5.4359 43 1 -0.9928 5.7361 5.4382 44 1 -3.2922 5.0222 1.5324 45 1 -4.6790 5.3988 2.5829 46 1 -3.8122 6.7108 1.7489 47 1 -1.6732 4.4753 1.3925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348540684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = -5.782687 kcal Electronic energy + Delta-G solvation = -28197.408607 eV Core-core repulsion = 24540.238131 eV Total energy + Delta-G solvation = -3657.170476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56202 -39.51525 -37.78956 -36.35212 -34.37470 -32.45298 -31.80739 -30.77600 -29.78307 -29.18878 -28.34043 -26.49575 -23.82130 -23.56645 -22.95650 -22.40435 -20.51690 -19.68970 -18.13582 -17.25387 -16.80199 -16.23150 -15.66815 -15.35254 -15.17716 -14.93638 -14.78615 -14.31227 -14.09629 -13.83873 -13.66304 -13.29909 -13.22721 -12.93379 -12.79125 -12.51383 -12.33267 -12.13525 -12.06312 -11.90598 -11.57061 -11.50982 -11.20299 -11.10215 -11.03583 -10.97755 -10.82554 -10.68712 -10.21008 -10.14627 -10.02419 -9.64927 -9.57641 -8.98038 -8.74900 -8.60586 -8.39249 -7.80221 -6.44805 -4.47131 0.86339 1.33326 2.50283 3.03404 3.11772 3.15273 3.38697 3.63358 4.06155 4.13414 4.19678 4.81743 4.93447 5.02037 5.03992 5.21358 5.33192 5.35090 5.40302 5.48526 5.51340 5.59765 5.73612 5.75994 5.87937 5.94757 5.98130 6.07025 6.12938 6.21046 6.23224 6.25679 6.35429 6.43219 6.44552 6.48289 6.54087 6.59794 6.73513 6.76040 6.83936 6.94766 7.10226 7.16687 7.20380 7.39154 7.56316 7.95703 8.26376 8.65552 8.82285 9.11269 10.65183 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.006011 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.228512 B = 4657.117215 C = 6500.404699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.173 3.827 4 C -0.131 4.131 5 C -0.147 4.147 6 N -0.569 5.569 7 C 0.178 3.822 8 C -0.544 4.544 9 H 0.091 0.909 10 C 0.083 3.917 11 N -0.872 5.872 12 Si 0.857 3.143 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.259 1.259 16 C 0.559 3.441 17 O -0.556 6.556 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.152 4.152 21 C -0.043 4.043 22 C -0.205 4.205 23 C 0.402 3.598 24 C -0.203 4.203 25 O -0.471 6.471 26 C -0.021 4.021 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.271 0.729 41 H 0.213 0.787 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 -1.951 -3.886 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.088 3.912 4 C -0.187 4.187 5 C -0.205 4.205 6 N -0.298 5.298 7 C 0.058 3.942 8 C -0.581 4.581 9 H 0.109 0.891 10 C -0.124 4.124 11 N -0.507 5.507 12 Si 0.682 3.318 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.183 1.183 16 C 0.349 3.651 17 O -0.438 6.438 18 C -0.154 4.154 19 C -0.093 4.093 20 C -0.170 4.170 21 C -0.061 4.061 22 C -0.206 4.206 23 C 0.282 3.718 24 C -0.260 4.260 25 O -0.349 6.349 26 C -0.040 4.040 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.228 0.772 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.241 -1.459 -3.831 11.031 hybrid contribution -0.017 -0.605 0.954 1.130 sum -10.258 -2.064 -2.878 10.852 Atomic orbital electron populations 1.21761 0.96018 1.00481 1.02235 1.21897 0.96142 0.96612 1.02042 1.20452 0.94493 0.91163 0.85060 1.22346 1.02336 1.00165 0.93900 1.22208 0.93449 1.02932 1.01918 1.47780 1.39296 1.34333 1.08379 1.20667 0.95957 0.96746 0.80863 1.21394 1.01216 1.31756 1.03782 0.89129 1.24933 0.94555 0.94890 0.97989 1.69867 1.12898 1.41862 1.26114 0.87125 0.80724 0.81854 0.82073 1.19466 1.20399 1.18285 1.18156 0.79286 0.79754 0.87942 1.90738 1.58824 1.67671 1.26584 1.20072 0.96495 1.03092 0.95728 1.24351 1.03060 0.91622 0.90241 1.21269 0.96483 0.99388 0.99836 1.21573 0.93005 0.94560 0.96984 1.20275 0.98117 1.06049 0.96192 1.22437 0.85837 0.76640 0.86860 1.22248 1.00414 1.04835 0.98512 1.90499 1.75337 1.33336 1.35691 1.21514 0.94512 0.91374 0.96616 0.92336 0.93572 0.92946 0.91505 0.91619 0.91869 0.95035 0.90138 0.90026 0.93567 0.92125 0.95314 0.92507 0.91879 0.77178 0.85208 0.85361 0.89542 0.89086 0.88780 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.34 37.16 0.35 -1.75 16 2 C -0.13 -1.92 4.96 -26.73 -0.13 -2.05 16 3 C 0.17 2.96 0.80 -131.82 -0.10 2.86 16 4 C -0.13 -2.18 6.69 37.16 0.25 -1.94 16 5 C -0.15 -2.60 7.25 37.16 0.27 -2.33 16 6 N -0.57 -10.77 1.76 -161.28 -0.28 -11.05 16 7 C 0.18 3.60 3.22 -5.19 -0.02 3.58 16 8 C -0.54 -12.57 5.80 -34.44 -0.20 -12.77 16 9 H 0.09 2.35 6.68 -52.48 -0.35 2.00 16 10 C 0.08 2.00 5.31 -17.82 -0.09 1.90 16 11 N -0.87 -22.91 13.96 55.43 0.77 -22.13 16 12 Si 0.86 17.95 27.33 -169.99 -4.65 13.31 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.26 -5.12 6.54 56.52 0.37 -4.75 16 16 C 0.56 10.77 6.94 -12.32 -0.09 10.68 16 17 O -0.56 -10.99 11.94 5.31 0.06 -10.93 16 18 C -0.15 -2.76 5.62 -105.03 -0.59 -3.35 16 19 C -0.08 -1.44 7.54 -39.07 -0.29 -1.73 16 20 C -0.15 -2.56 10.01 -39.71 -0.40 -2.95 16 21 C -0.04 -0.67 9.59 -39.02 -0.37 -1.05 16 22 C -0.21 -3.15 5.86 -105.11 -0.62 -3.76 16 23 C 0.40 5.62 7.21 -30.68 -0.22 5.40 16 24 C -0.20 -2.04 10.16 36.00 0.37 -1.67 16 25 O -0.47 -7.81 17.10 5.58 0.10 -7.72 16 26 C -0.02 -0.33 8.94 -38.70 -0.35 -0.68 16 27 H 0.06 0.83 6.28 -51.93 -0.33 0.50 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.82 7.31 -51.93 -0.38 0.44 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.07 1.01 7.07 -51.93 -0.37 0.64 16 32 H 0.06 1.18 6.89 -51.93 -0.36 0.83 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.38 4.46 -51.93 -0.23 1.15 16 35 H 0.08 1.58 6.52 -51.93 -0.34 1.24 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.18 7.29 -51.93 -0.38 0.80 16 38 H 0.03 0.57 6.39 -51.93 -0.33 0.24 16 39 H 0.06 1.16 3.32 -51.93 -0.17 0.98 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.21 4.40 2.26 -52.48 -0.12 4.28 16 42 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 43 H 0.13 1.85 7.65 -52.49 -0.40 1.45 16 44 H 0.09 0.80 5.71 -51.93 -0.30 0.50 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.14 1.92 5.79 -52.49 -0.30 1.62 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -26.61 356.89 -7.34 -33.95 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.48 Total: 10.80 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.24 Total: -11.60 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.49 Total: -33.19 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.16 Total: -18.65 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.65 Total: 13.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.61 -7.34 -33.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348540684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.169 kcal (2) G-P(sol) polarization free energy of solvation -26.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds