Wall clock time and date at job start Tue Mar 31 2020 11:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36174 * 116.99947 * 2 1 4 4 C 1.34272 * 126.93031 * 269.99794 * 3 2 1 5 5 C 1.50696 * 124.97274 * 359.96042 * 4 3 2 6 6 N 1.46902 * 109.47057 * 89.99963 * 5 4 3 7 7 C 1.46904 * 111.00073 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46943 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47635 * 300.00008 * 8 7 6 10 10 C 1.53008 * 109.47176 * 60.00178 * 8 7 6 11 11 C 1.53002 * 109.47147 * 179.97438 * 8 7 6 12 12 C 1.50702 * 109.47389 * 180.02562 * 11 8 7 13 13 H 1.07997 * 119.99587 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00105 * 180.02562 * 12 11 8 15 15 N 1.31507 * 120.00004 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99851 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46982 * 90.00632 * 16 14 12 18 18 H 1.48502 * 109.47384 * 210.00071 * 16 14 12 19 19 H 1.48501 * 109.47454 * 330.00529 * 16 14 12 20 20 O 1.34738 * 110.06207 * 179.97438 * 4 3 2 21 21 C 1.34806 * 110.90850 * 0.02562 * 20 4 3 22 22 C 1.38962 * 133.42784 * 179.97438 * 21 20 4 23 23 C 1.37841 * 119.81639 * 180.02562 * 22 21 20 24 24 C 1.38755 * 120.68636 * 0.02562 * 23 22 21 25 25 C 1.36729 * 120.41041 * 359.97438 * 24 23 22 26 26 C 1.39385 * 119.72664 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47163 * 300.00256 * 1 2 3 29 29 H 1.09004 * 109.47412 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.47804 * 209.99855 * 5 4 3 31 31 H 1.09000 * 109.47288 * 329.99916 * 5 4 3 32 32 H 1.00896 * 111.00344 * 56.04637 * 6 5 4 33 33 H 1.08991 * 109.46803 * 299.99867 * 7 6 5 34 34 H 1.09001 * 109.47032 * 59.99963 * 7 6 5 35 35 H 1.08998 * 109.47003 * 59.99716 * 9 8 7 36 36 H 1.09000 * 109.47493 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47028 * 300.00270 * 9 8 7 38 38 H 1.08999 * 109.46736 * 59.99569 * 10 8 7 39 39 H 1.09000 * 109.47293 * 179.97438 * 10 8 7 40 40 H 1.08998 * 109.46783 * 299.99868 * 10 8 7 41 41 H 1.08999 * 109.47281 * 300.00747 * 11 8 7 42 42 H 1.09001 * 109.46745 * 60.00202 * 11 8 7 43 43 H 0.97002 * 119.99958 * 179.97438 * 15 14 12 44 44 H 1.08003 * 120.09492 * 0.04512 * 22 21 20 45 45 H 1.08003 * 119.65664 * 180.27558 * 23 22 21 46 46 H 1.08004 * 119.79121 * 179.97438 * 24 23 22 47 47 H 1.08006 * 120.13295 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4135 1.9321 -1.0733 5 6 2.2018 1.5146 -2.5057 6 7 0.8986 2.0071 -2.9718 7 6 0.6571 1.6175 -4.3675 8 6 -0.7067 2.1465 -4.8159 9 6 -1.8011 1.5557 -3.9248 10 6 -0.7246 3.6722 -4.7019 11 6 -0.9580 1.7413 -6.2697 12 6 -2.3011 2.2629 -6.7116 13 1 -2.9142 2.8266 -6.0242 14 6 -2.7475 2.0195 -7.9933 15 7 -3.9197 2.4743 -8.3787 16 14 -1.6872 1.0439 -9.1821 17 1 -2.0096 -0.4007 -9.0618 18 1 -1.9551 1.4969 -10.5707 19 1 -0.2539 1.2598 -8.8588 20 8 2.9983 3.0813 -0.6824 21 6 3.0416 3.1659 0.6623 22 6 3.5292 4.1228 1.5441 23 6 3.4257 3.9183 2.9034 24 6 2.8391 2.7644 3.4032 25 6 2.3532 1.8107 2.5525 26 6 2.4479 2.0003 1.1749 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.9924 1.9349 -3.1274 31 1 2.2250 0.4271 -2.5745 32 1 0.8281 3.0071 -2.8578 33 1 1.4369 2.0381 -5.0022 34 1 0.6694 0.5306 -4.4487 35 1 -1.6219 1.8447 -2.8893 36 1 -2.7727 1.9329 -4.2440 37 1 -1.7884 0.4688 -4.0061 38 1 0.0551 4.0931 -5.3367 39 1 -1.6960 4.0491 -5.0217 40 1 -0.5454 3.9612 -3.6663 41 1 -0.1783 2.1625 -6.9043 42 1 -0.9452 0.6544 -6.3514 43 1 -4.2336 2.3034 -9.2805 44 1 3.9877 5.0244 1.1656 45 1 3.8015 4.6657 3.5864 46 1 2.7660 2.6188 4.4709 47 1 1.8971 0.9144 2.9465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353187155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:07 Heat of formation + Delta-G solvation = -15.401966 kcal Electronic energy + Delta-G solvation = -26507.687957 eV Core-core repulsion = 22850.100358 eV Total energy + Delta-G solvation = -3657.587599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.70212 -38.39004 -38.19327 -37.74395 -34.70972 -32.40794 -32.08030 -30.64101 -29.95314 -27.79736 -27.16761 -26.43273 -26.07828 -24.39991 -23.14719 -22.06222 -21.71130 -21.07526 -18.18094 -18.03909 -17.41352 -16.83474 -16.67150 -16.01482 -15.73214 -15.27844 -14.98683 -14.78347 -14.70645 -14.38564 -14.07612 -13.97705 -13.57663 -13.27861 -12.86831 -12.64922 -12.52058 -12.43731 -12.32025 -12.11501 -11.86322 -11.82578 -11.35280 -11.10104 -10.98460 -10.90332 -10.53381 -10.41939 -10.09181 -10.00510 -9.82909 -9.71729 -9.36610 -8.94214 -8.90240 -8.51383 -8.41753 -8.22141 -6.01464 -3.97866 0.60258 1.06957 1.85451 2.41256 3.31101 3.37130 3.39028 3.41833 3.64371 4.04819 4.39346 4.46851 4.55990 4.65254 4.86327 4.94691 5.00259 5.05352 5.26181 5.28795 5.31482 5.40632 5.42709 5.52058 5.54658 5.61256 5.69175 5.81857 5.84290 5.93790 6.03185 6.07526 6.15583 6.17529 6.35619 6.38182 6.54164 6.63218 6.75296 6.89309 6.97370 7.06722 7.11782 7.19516 7.28825 7.32986 7.38009 7.48635 7.83214 8.57827 9.04271 9.61499 11.11612 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.002597 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.820267 B =10777.566493 C =11019.372846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.024 3.976 4 C 0.028 3.972 5 C 0.134 3.866 6 N -0.681 5.681 7 C 0.067 3.933 8 C -0.048 4.048 9 C -0.118 4.118 10 C -0.132 4.132 11 C -0.004 4.004 12 C -0.507 4.507 13 H 0.078 0.922 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 O -0.183 6.183 21 C 0.061 3.939 22 C -0.107 4.107 23 C -0.093 4.093 24 C -0.139 4.139 25 C -0.063 4.063 26 C -0.143 4.143 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.345 0.655 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.013 0.987 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.033 -0.237 22.315 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.218 6.218 3 C -0.023 4.023 4 C -0.021 4.021 5 C 0.005 3.995 6 N -0.314 5.314 7 C -0.061 4.061 8 C -0.048 4.048 9 C -0.175 4.175 10 C -0.189 4.189 11 C -0.042 4.042 12 C -0.545 4.545 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.192 1.192 20 O -0.085 6.085 21 C 0.014 3.986 22 C -0.126 4.126 23 C -0.111 4.111 24 C -0.157 4.157 25 C -0.081 4.081 26 C -0.145 4.145 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.147 0.853 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.743 -0.746 22.223 26.679 hybrid contribution 0.854 0.117 -1.152 1.439 sum 15.597 -0.629 21.071 26.223 Atomic orbital electron populations 1.23168 0.78381 1.03237 1.01778 1.86059 1.20439 1.21729 1.93614 1.18851 1.04087 0.89728 0.89637 1.22415 0.98430 0.84489 0.96736 1.20486 0.92169 1.01432 0.85370 1.60643 1.28144 1.19711 1.22919 1.22197 0.97875 1.00539 0.85487 1.20418 0.92061 0.94969 0.97350 1.21621 0.98910 0.99501 0.97481 1.21793 1.02925 0.95646 0.98528 1.19632 0.97740 0.95937 0.90898 1.21120 1.01142 1.34303 0.97968 0.90429 1.25017 0.94806 0.95599 0.98178 1.69905 1.19082 1.46675 1.18812 0.86848 0.81634 0.80654 0.80508 1.20430 1.21583 1.19175 1.84082 1.66848 1.36707 1.20858 1.19440 1.01332 0.96565 0.81298 1.19967 1.03099 0.98258 0.91239 1.20943 0.98714 0.97769 0.93691 1.20791 1.00498 0.94423 0.99959 1.20288 0.98133 0.99233 0.90483 1.20093 1.04202 0.95541 0.94644 0.88896 0.94075 0.91343 0.93133 0.87438 0.83560 0.95342 0.91099 0.93845 0.92036 0.94109 0.94036 0.91052 0.94646 0.96878 0.97074 0.92870 0.84871 0.84729 0.85306 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.14 101.05 1.13 1.44 16 2 O -0.30 -3.98 10.52 -20.29 -0.21 -4.19 16 3 C 0.02 0.32 6.51 -37.44 -0.24 0.07 16 4 C 0.03 0.36 6.77 -35.71 -0.24 0.12 16 5 C 0.13 1.63 6.14 -4.98 -0.03 1.60 16 6 N -0.68 -9.17 5.70 -115.06 -0.66 -9.82 16 7 C 0.07 1.03 4.65 -3.82 -0.02 1.01 16 8 C -0.05 -0.88 0.60 -154.51 -0.09 -0.97 16 9 C -0.12 -2.16 8.06 37.16 0.30 -1.86 16 10 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 11 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 12 C -0.51 -13.77 8.20 -34.44 -0.28 -14.05 16 13 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 14 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 15 N -0.91 -27.54 13.96 55.43 0.77 -26.77 16 16 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 O -0.18 -2.43 10.59 3.11 0.03 -2.40 16 21 C 0.06 0.75 7.41 -38.47 -0.29 0.47 16 22 C -0.11 -1.02 10.07 -39.46 -0.40 -1.41 16 23 C -0.09 -0.72 10.01 -39.54 -0.40 -1.12 16 24 C -0.14 -1.12 9.98 -39.94 -0.40 -1.52 16 25 C -0.06 -0.64 10.05 -39.70 -0.40 -1.04 16 26 C -0.14 -1.80 6.40 -105.08 -0.67 -2.47 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.42 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.34 4.68 6.76 -39.29 -0.27 4.42 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.71 7.60 -51.93 -0.39 0.32 16 36 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 40 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 41 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -30.80 380.14 -8.36 -39.16 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.43 Total: 1.68 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.92 Total: -20.25 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.12 Total: -36.60 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.18 Total: -6.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.80 -8.36 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.759 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds