Wall clock time and date at job start Tue Mar 31 2020 11:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36174 * 116.99947 * 2 1 4 4 C 1.34272 * 126.93031 * 269.99794 * 3 2 1 5 5 C 1.50696 * 124.97274 * 359.96042 * 4 3 2 6 6 N 1.46902 * 109.47057 * 89.99963 * 5 4 3 7 7 C 1.46904 * 111.00073 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46943 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47635 * 300.00008 * 8 7 6 10 10 C 1.53008 * 109.47176 * 60.00178 * 8 7 6 11 11 C 1.53002 * 109.47147 * 179.97438 * 8 7 6 12 12 C 1.50702 * 109.47389 * 180.02562 * 11 8 7 13 13 H 1.07997 * 119.99587 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00105 * 180.02562 * 12 11 8 15 15 N 1.31507 * 120.00004 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99851 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46982 * 90.00632 * 16 14 12 18 18 H 1.48502 * 109.47384 * 210.00071 * 16 14 12 19 19 H 1.48501 * 109.47454 * 330.00529 * 16 14 12 20 20 O 1.34738 * 110.06207 * 179.97438 * 4 3 2 21 21 C 1.34806 * 110.90850 * 0.02562 * 20 4 3 22 22 C 1.38962 * 133.42784 * 179.97438 * 21 20 4 23 23 C 1.37841 * 119.81639 * 180.02562 * 22 21 20 24 24 C 1.38755 * 120.68636 * 0.02562 * 23 22 21 25 25 C 1.36729 * 120.41041 * 359.97438 * 24 23 22 26 26 C 1.39385 * 119.72664 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47163 * 300.00256 * 1 2 3 29 29 H 1.09004 * 109.47412 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.47804 * 209.99855 * 5 4 3 31 31 H 1.09000 * 109.47288 * 329.99916 * 5 4 3 32 32 H 1.00896 * 111.00344 * 56.04637 * 6 5 4 33 33 H 1.08991 * 109.46803 * 299.99867 * 7 6 5 34 34 H 1.09001 * 109.47032 * 59.99963 * 7 6 5 35 35 H 1.08998 * 109.47003 * 59.99716 * 9 8 7 36 36 H 1.09000 * 109.47493 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47028 * 300.00270 * 9 8 7 38 38 H 1.08999 * 109.46736 * 59.99569 * 10 8 7 39 39 H 1.09000 * 109.47293 * 179.97438 * 10 8 7 40 40 H 1.08998 * 109.46783 * 299.99868 * 10 8 7 41 41 H 1.08999 * 109.47281 * 300.00747 * 11 8 7 42 42 H 1.09001 * 109.46745 * 60.00202 * 11 8 7 43 43 H 0.97002 * 119.99958 * 179.97438 * 15 14 12 44 44 H 1.08003 * 120.09492 * 0.04512 * 22 21 20 45 45 H 1.08003 * 119.65664 * 180.27558 * 23 22 21 46 46 H 1.08004 * 119.79121 * 179.97438 * 24 23 22 47 47 H 1.08006 * 120.13295 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4135 1.9321 -1.0733 5 6 2.2018 1.5146 -2.5057 6 7 0.8986 2.0071 -2.9718 7 6 0.6571 1.6175 -4.3675 8 6 -0.7067 2.1465 -4.8159 9 6 -1.8011 1.5557 -3.9248 10 6 -0.7246 3.6722 -4.7019 11 6 -0.9580 1.7413 -6.2697 12 6 -2.3011 2.2629 -6.7116 13 1 -2.9142 2.8266 -6.0242 14 6 -2.7475 2.0195 -7.9933 15 7 -3.9197 2.4743 -8.3787 16 14 -1.6872 1.0439 -9.1821 17 1 -2.0096 -0.4007 -9.0618 18 1 -1.9551 1.4969 -10.5707 19 1 -0.2539 1.2598 -8.8588 20 8 2.9983 3.0813 -0.6824 21 6 3.0416 3.1659 0.6623 22 6 3.5292 4.1228 1.5441 23 6 3.4257 3.9183 2.9034 24 6 2.8391 2.7644 3.4032 25 6 2.3532 1.8107 2.5525 26 6 2.4479 2.0003 1.1749 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.9924 1.9349 -3.1274 31 1 2.2250 0.4271 -2.5745 32 1 0.8281 3.0071 -2.8578 33 1 1.4369 2.0381 -5.0022 34 1 0.6694 0.5306 -4.4487 35 1 -1.6219 1.8447 -2.8893 36 1 -2.7727 1.9329 -4.2440 37 1 -1.7884 0.4688 -4.0061 38 1 0.0551 4.0931 -5.3367 39 1 -1.6960 4.0491 -5.0217 40 1 -0.5454 3.9612 -3.6663 41 1 -0.1783 2.1625 -6.9043 42 1 -0.9452 0.6544 -6.3514 43 1 -4.2336 2.3034 -9.2805 44 1 3.9877 5.0244 1.1656 45 1 3.8015 4.6657 3.5864 46 1 2.7660 2.6188 4.4709 47 1 1.8971 0.9144 2.9465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353187155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:06 Heat of formation + Delta-G solvation = -33.670492 kcal Electronic energy + Delta-G solvation = -26508.480140 eV Core-core repulsion = 22850.100358 eV Total energy + Delta-G solvation = -3658.379782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.55156 -39.43742 -39.11736 -38.82736 -36.03224 -34.29425 -33.04203 -31.38449 -30.98689 -29.53885 -28.16422 -27.93683 -27.13462 -25.71415 -23.97428 -23.59808 -22.65026 -21.95810 -19.56777 -18.98561 -18.86201 -18.23229 -17.59265 -17.09760 -16.63316 -16.36291 -16.10630 -15.82864 -15.78948 -15.65938 -15.32109 -14.92146 -14.77465 -14.69107 -14.38270 -14.05595 -13.71647 -13.50973 -13.32093 -13.23722 -12.93904 -12.79137 -12.72628 -12.65459 -12.43506 -12.24535 -12.08149 -12.05314 -11.71723 -11.37254 -11.08438 -10.91129 -10.88760 -10.80728 -10.69289 -9.67157 -9.45264 -9.09276 -8.20966 -6.21239 -0.17496 0.32934 0.99281 1.36935 1.38488 1.49244 1.57336 2.40225 2.61745 2.80481 3.12819 3.14338 3.40585 3.78185 3.94887 4.05755 4.07840 4.16192 4.22485 4.25684 4.33113 4.36619 4.47378 4.48098 4.59016 4.66601 4.72100 4.72979 4.78184 4.88294 4.92054 5.02939 5.04347 5.08351 5.18111 5.20981 5.36099 5.36718 5.45635 5.48179 5.51097 5.60993 5.67640 5.74648 5.80455 5.93757 6.07698 6.31632 6.41837 6.42682 6.86362 7.41209 8.95305 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.002597 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.820267 B =10777.566493 C =11019.372846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.011 3.989 4 C 0.015 3.985 5 C 0.141 3.859 6 N -0.680 5.680 7 C 0.080 3.920 8 C -0.047 4.047 9 C -0.108 4.108 10 C -0.125 4.125 11 C -0.003 4.003 12 C -0.502 4.502 13 H 0.043 0.957 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.941 3.059 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.247 1.247 20 O -0.195 6.195 21 C 0.036 3.964 22 C -0.117 4.117 23 C -0.083 4.083 24 C -0.132 4.132 25 C -0.079 4.079 26 C -0.170 4.170 27 H 0.112 0.888 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.345 0.655 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.262 0.738 44 H 0.151 0.849 45 H 0.172 0.828 46 H 0.161 0.839 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.587 -0.543 24.329 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.231 6.231 3 C -0.035 4.035 4 C -0.033 4.033 5 C 0.012 3.988 6 N -0.313 5.313 7 C -0.049 4.049 8 C -0.047 4.047 9 C -0.166 4.166 10 C -0.183 4.183 11 C -0.041 4.041 12 C -0.540 4.540 13 H 0.062 0.938 14 C -0.196 4.196 15 N -0.598 5.598 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.217 1.217 19 H -0.171 1.171 20 O -0.098 6.098 21 C -0.011 4.011 22 C -0.135 4.135 23 C -0.101 4.101 24 C -0.149 4.149 25 C -0.097 4.097 26 C -0.171 4.171 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.164 0.836 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.169 0.831 45 H 0.189 0.811 46 H 0.178 0.822 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.316 -1.055 24.262 29.826 hybrid contribution 0.032 0.290 -1.573 1.600 sum 17.348 -0.765 22.689 28.571 Atomic orbital electron populations 1.23235 0.77484 1.04369 1.01336 1.86024 1.21353 1.21972 1.93736 1.19113 1.04189 0.89817 0.90427 1.22456 0.99155 0.84791 0.96946 1.20443 0.91546 1.01589 0.85197 1.60550 1.29457 1.19720 1.21566 1.21931 0.95627 1.00680 0.86615 1.20334 0.94199 0.95338 0.94829 1.21509 0.97135 0.99403 0.98518 1.21703 1.01053 0.95307 1.00192 1.19601 0.95009 0.95809 0.93704 1.21426 1.02533 1.32844 0.97245 0.93834 1.25933 0.96126 0.97120 1.00422 1.70066 1.21322 1.48989 1.19394 0.85794 0.80693 0.79172 0.77768 1.19603 1.21668 1.17089 1.84038 1.67232 1.36821 1.21676 1.19933 1.02460 0.97572 0.81091 1.20391 1.02976 0.98410 0.91738 1.21446 0.97013 0.98149 0.93450 1.21227 0.98743 0.93637 1.01327 1.20554 0.98871 1.00391 0.89914 1.20337 1.05391 0.95870 0.95529 0.87002 0.93606 0.92636 0.92034 0.87075 0.83572 0.94619 0.90553 0.91858 0.95415 0.93906 0.93577 0.94478 0.92033 0.96713 0.96687 0.92942 0.83083 0.81065 0.82156 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.14 113.37 1.26 1.89 16 2 O -0.31 -8.11 10.52 -95.53 -1.00 -9.11 16 3 C 0.01 0.30 6.51 23.66 0.15 0.45 16 4 C 0.01 0.38 6.77 24.78 0.17 0.55 16 5 C 0.14 3.22 6.14 85.56 0.53 3.74 16 6 N -0.68 -17.20 5.70 -517.94 -2.95 -20.15 16 7 C 0.08 2.29 4.65 86.30 0.40 2.69 16 8 C -0.05 -1.69 0.60 -52.18 -0.03 -1.72 16 9 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 10 C -0.13 -4.46 7.89 71.98 0.57 -3.89 16 11 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 12 C -0.50 -27.94 8.20 25.60 0.21 -27.73 16 13 H 0.04 2.67 5.92 -2.91 -0.02 2.65 16 14 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 15 N -0.96 -60.07 13.96 21.45 0.30 -59.77 16 16 Si 0.94 44.38 27.47 68.60 1.88 46.27 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 20 O -0.20 -5.11 10.59 -11.77 -0.12 -5.24 16 21 C 0.04 0.86 7.41 22.99 0.17 1.03 16 22 C -0.12 -1.97 10.07 22.35 0.23 -1.75 16 23 C -0.08 -1.00 10.01 22.30 0.22 -0.78 16 24 C -0.13 -1.72 9.98 22.04 0.22 -1.50 16 25 C -0.08 -1.50 10.05 22.19 0.22 -1.27 16 26 C -0.17 -4.16 6.40 -20.16 -0.13 -4.29 16 27 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.34 8.79 6.76 -89.70 -0.61 8.19 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.04 7.60 -2.39 -0.02 2.02 16 36 H 0.03 1.17 6.62 -2.39 -0.02 1.16 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 1.55 6.62 -2.39 -0.02 1.54 16 40 H 0.06 1.84 6.57 -2.39 -0.02 1.83 16 41 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 42 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 43 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 46 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -69.00 380.14 3.73 -65.27 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.30 Total: 18.32 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 5.33 Total: -35.58 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.65 Total: -79.93 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.13 Total: -14.35 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -69.00 3.73 -65.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.604 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds