Wall clock time and date at job start Tue Mar 31 2020 11:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50701 * 109.47180 * 59.99852 * 4 2 1 6 6 H 1.07995 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99755 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48496 * 109.46973 * 209.99817 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 14 14 N 1.46896 * 109.47500 * 300.00262 * 13 2 1 15 15 C 1.46900 * 111.00713 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46734 * 34.99846 * 15 14 13 17 17 C 1.53000 * 109.46892 * 275.00181 * 15 14 13 18 18 C 1.52998 * 109.47093 * 299.99160 * 17 15 14 19 19 C 1.52997 * 109.47472 * 300.00704 * 18 17 15 20 20 C 1.53000 * 109.47536 * 59.99567 * 19 18 17 21 21 H 1.09003 * 109.46527 * 60.00144 * 20 19 18 22 22 S 1.81398 * 109.47518 * 180.02562 * 20 19 18 23 23 C 1.81397 * 101.91942 * 305.00173 * 22 20 19 24 24 O 1.42098 * 108.57734 * 59.48691 * 22 20 19 25 25 O 1.42092 * 108.57962 * 190.51342 * 22 20 19 26 26 C 1.52997 * 109.47173 * 154.99783 * 15 14 13 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 0.97001 * 119.99839 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47066 * 60.00169 * 13 2 1 37 37 H 1.08996 * 109.47747 * 179.97438 * 13 2 1 38 38 H 1.00904 * 110.99906 * 56.04157 * 14 13 2 39 39 H 1.09000 * 109.47408 * 60.00132 * 17 15 14 40 40 H 1.09003 * 109.46527 * 179.97438 * 17 15 14 41 41 H 1.09007 * 109.46823 * 60.00368 * 18 17 15 42 42 H 1.09000 * 109.47201 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.47239 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.47095 * 300.00059 * 19 18 17 45 45 H 1.09006 * 109.47453 * 59.99931 * 23 22 20 46 46 H 1.08999 * 109.47131 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.47521 * 300.00012 * 23 22 20 48 48 H 1.09003 * 109.47095 * 180.02562 * 26 15 14 49 49 H 1.09000 * 109.47147 * 299.99710 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 2.6264 -1.5512 -3.8527 9 14 1.2471 0.3982 -5.2572 10 1 2.2251 1.4399 -5.6619 11 1 1.0818 -0.5811 -6.3611 12 1 -0.0610 1.0358 -4.9610 13 6 2.0400 -0.7212 1.2491 14 7 1.5504 -0.0289 2.4486 15 6 2.0210 -0.6953 3.6703 16 1 3.0229 -1.0916 3.5050 17 6 1.0711 -1.8414 4.0241 18 6 -0.3351 -1.2851 4.2562 19 6 -0.3014 -0.2769 5.4065 20 6 0.6484 0.8692 5.0526 21 1 0.2992 1.3637 4.1462 22 16 0.6890 2.0642 6.4168 23 6 -1.0686 2.4672 6.6141 24 8 1.1350 1.3974 7.5896 25 8 1.3741 3.2291 5.9780 26 6 2.0547 0.3129 4.8206 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 3.1300 -0.7208 -1.2496 34 1 1.6767 -1.7489 -1.2494 35 1 2.8602 -1.8830 -4.7338 36 1 1.6768 -1.7489 1.2491 37 1 3.1300 -0.7216 1.2489 38 1 0.5439 0.0412 2.4401 39 1 1.0472 -2.5597 3.2046 40 1 1.4206 -2.3361 4.9304 41 1 -0.6843 -0.7905 3.3497 42 1 -1.0119 -2.1016 4.5078 43 1 -1.3032 0.1198 5.5715 44 1 0.0478 -0.7714 6.3129 45 1 -1.6243 1.5610 6.8556 46 1 -1.1871 3.1913 7.4202 47 1 -1.4508 2.8910 5.6855 48 1 2.4043 -0.1815 5.7269 49 1 2.7314 1.1293 4.5684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353530386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:41 Heat of formation + Delta-G solvation = -97.776934 kcal Electronic energy + Delta-G solvation = -26196.224142 eV Core-core repulsion = 22670.508447 eV Total energy + Delta-G solvation = -3525.715695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.61318 -37.23589 -36.95778 -36.22600 -33.67541 -32.18680 -31.27841 -30.21594 -28.97310 -26.88052 -26.36100 -25.09832 -23.38517 -22.80281 -22.38138 -19.39411 -18.95725 -18.08076 -17.18870 -16.34598 -16.24393 -16.13603 -15.52946 -15.32515 -14.92094 -14.43581 -14.36906 -13.86166 -13.58383 -13.53646 -13.27623 -13.08327 -13.03088 -12.67161 -12.38300 -12.24845 -12.18801 -12.08252 -11.97204 -11.84815 -11.74791 -11.42320 -11.24213 -11.07859 -10.94963 -10.81759 -10.76426 -10.55062 -10.44101 -10.27590 -10.18940 -10.03419 -9.70410 -9.03355 -8.84131 -8.32877 -8.09741 -5.97448 -3.97579 -0.25243 2.47831 3.32451 3.38180 3.39102 3.41388 3.71837 4.15675 4.17598 4.38789 4.45649 4.49398 4.59595 4.68783 4.81078 4.95088 5.01838 5.16059 5.17908 5.33190 5.35269 5.38546 5.52815 5.62731 5.64946 5.70595 5.74450 5.85029 5.89085 5.96597 5.99953 6.08405 6.26167 6.31362 6.47877 6.64102 6.76915 6.80986 7.18639 7.21303 7.25530 7.38436 7.65592 7.69940 7.84300 8.02813 8.47176 9.07870 9.65350 11.14213 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.002882 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.918154 B = 9713.429033 C =10100.365821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.094 3.906 16 H 0.084 0.916 17 C -0.153 4.153 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.561 4.561 21 H 0.145 0.855 22 S 2.416 3.584 23 C -0.660 4.660 24 O -0.943 6.943 25 O -0.938 6.938 26 C -0.091 4.091 27 H 0.030 0.970 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.338 0.662 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.078 0.922 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 2.563 21.936 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.059 4.059 14 N -0.315 5.315 15 C -0.018 4.018 16 H 0.102 0.898 17 C -0.192 4.192 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.671 4.671 21 H 0.163 0.837 22 S 2.599 3.401 23 C -0.809 4.809 24 O -0.940 6.940 25 O -0.936 6.936 26 C -0.130 4.130 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.097 0.903 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.681 3.284 22.297 23.507 hybrid contribution -1.605 -0.709 -1.504 2.311 sum -8.285 2.576 20.793 22.531 Atomic orbital electron populations 1.21769 0.96249 1.00257 1.00267 1.20633 0.94580 0.96194 0.94521 1.21606 0.99895 0.95751 1.00153 1.19113 0.96112 0.94901 0.90170 1.21236 1.30805 1.11877 0.90627 0.92318 1.25014 0.95420 0.95095 0.99061 1.69963 1.37315 1.23175 1.23292 0.86667 0.79227 0.79430 0.83100 1.20757 1.21415 1.19968 1.22138 0.99747 0.94773 0.89271 1.60735 1.16604 1.53208 1.00943 1.21409 0.98722 0.91530 0.90112 0.89777 1.22227 0.95750 0.98986 1.02270 1.21444 0.97498 0.98265 0.97977 1.21494 0.97510 0.95276 1.00465 1.30114 1.05233 1.12835 1.18916 0.83723 1.08087 0.78035 0.76715 0.77216 1.30321 1.26595 1.12179 1.11827 1.93570 1.79018 1.75721 1.45687 1.93608 1.70382 1.47025 1.82538 1.21370 0.91709 1.00414 0.99489 0.95080 0.94144 0.91698 0.93869 0.94098 0.92745 0.96697 0.96998 0.93165 0.95804 0.91520 0.83981 0.91380 0.91340 0.91349 0.91228 0.90743 0.89891 0.85270 0.85506 0.85178 0.90317 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.89 37.16 0.29 -1.97 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.07 1.12 4.44 -3.83 -0.02 1.10 16 14 N -0.68 -8.78 4.98 -106.73 -0.53 -9.31 16 15 C 0.09 1.01 2.86 -67.71 -0.19 0.81 16 16 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 17 C -0.15 -1.42 5.52 -26.73 -0.15 -1.57 16 18 C -0.11 -0.88 5.67 -26.73 -0.15 -1.03 16 19 C -0.11 -0.69 4.91 -26.73 -0.13 -0.82 16 20 C -0.56 -4.34 2.38 -26.73 -0.06 -4.41 16 21 H 0.14 1.06 7.21 -51.92 -0.37 0.68 16 22 S 2.42 20.14 4.90 -107.50 -0.53 19.61 16 23 C -0.66 -3.08 10.01 101.05 1.01 -2.07 16 24 O -0.94 -10.70 18.06 -57.83 -1.04 -11.75 16 25 O -0.94 -11.83 18.10 -57.83 -1.05 -12.87 16 26 C -0.09 -0.87 4.91 -26.73 -0.13 -1.00 16 27 H 0.03 0.45 6.57 -51.93 -0.34 0.11 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 37 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 38 H 0.34 4.05 3.60 -39.29 -0.14 3.90 16 39 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.57 6.26 -51.92 -0.32 0.25 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.27 6.39 -51.93 -0.33 -0.06 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.13 0.36 6.78 -51.92 -0.35 0.00 16 46 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -34.46 376.53 -10.18 -44.64 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.63 Total: -0.66 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 0.20 Total: -25.84 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.21 Total: -35.23 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -2.09 Total: -24.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 20.14 SS G_CDS: -0.53 Total: 19.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.46 -10.18 -44.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.136 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds