Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50701 * 109.47180 * 59.99852 * 4 2 1 6 6 H 1.07995 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99755 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48496 * 109.46973 * 209.99817 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 14 14 N 1.46896 * 109.47500 * 300.00262 * 13 2 1 15 15 C 1.46900 * 111.00713 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46734 * 34.99846 * 15 14 13 17 17 C 1.53000 * 109.46892 * 275.00181 * 15 14 13 18 18 C 1.52998 * 109.47093 * 299.99160 * 17 15 14 19 19 C 1.52997 * 109.47472 * 300.00704 * 18 17 15 20 20 C 1.53000 * 109.47536 * 59.99567 * 19 18 17 21 21 H 1.09003 * 109.46527 * 60.00144 * 20 19 18 22 22 S 1.81398 * 109.47518 * 180.02562 * 20 19 18 23 23 C 1.81397 * 101.91942 * 305.00173 * 22 20 19 24 24 O 1.42098 * 108.57734 * 59.48691 * 22 20 19 25 25 O 1.42092 * 108.57962 * 190.51342 * 22 20 19 26 26 C 1.52997 * 109.47173 * 154.99783 * 15 14 13 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 0.97001 * 119.99839 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47066 * 60.00169 * 13 2 1 37 37 H 1.08996 * 109.47747 * 179.97438 * 13 2 1 38 38 H 1.00904 * 110.99906 * 56.04157 * 14 13 2 39 39 H 1.09000 * 109.47408 * 60.00132 * 17 15 14 40 40 H 1.09003 * 109.46527 * 179.97438 * 17 15 14 41 41 H 1.09007 * 109.46823 * 60.00368 * 18 17 15 42 42 H 1.09000 * 109.47201 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.47239 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.47095 * 300.00059 * 19 18 17 45 45 H 1.09006 * 109.47453 * 59.99931 * 23 22 20 46 46 H 1.08999 * 109.47131 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.47521 * 300.00012 * 23 22 20 48 48 H 1.09003 * 109.47095 * 180.02562 * 26 15 14 49 49 H 1.09000 * 109.47147 * 299.99710 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 2.6264 -1.5512 -3.8527 9 14 1.2471 0.3982 -5.2572 10 1 2.2251 1.4399 -5.6619 11 1 1.0818 -0.5811 -6.3611 12 1 -0.0610 1.0358 -4.9610 13 6 2.0400 -0.7212 1.2491 14 7 1.5504 -0.0289 2.4486 15 6 2.0210 -0.6953 3.6703 16 1 3.0229 -1.0916 3.5050 17 6 1.0711 -1.8414 4.0241 18 6 -0.3351 -1.2851 4.2562 19 6 -0.3014 -0.2769 5.4065 20 6 0.6484 0.8692 5.0526 21 1 0.2992 1.3637 4.1462 22 16 0.6890 2.0642 6.4168 23 6 -1.0686 2.4672 6.6141 24 8 1.1350 1.3974 7.5896 25 8 1.3741 3.2291 5.9780 26 6 2.0547 0.3129 4.8206 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 3.1300 -0.7208 -1.2496 34 1 1.6767 -1.7489 -1.2494 35 1 2.8602 -1.8830 -4.7338 36 1 1.6768 -1.7489 1.2491 37 1 3.1300 -0.7216 1.2489 38 1 0.5439 0.0412 2.4401 39 1 1.0472 -2.5597 3.2046 40 1 1.4206 -2.3361 4.9304 41 1 -0.6843 -0.7905 3.3497 42 1 -1.0119 -2.1016 4.5078 43 1 -1.3032 0.1198 5.5715 44 1 0.0478 -0.7714 6.3129 45 1 -1.6243 1.5610 6.8556 46 1 -1.1871 3.1913 7.4202 47 1 -1.4508 2.8910 5.6855 48 1 2.4043 -0.1815 5.7269 49 1 2.7314 1.1293 4.5684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353530386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = -121.870983 kcal Electronic energy + Delta-G solvation = -26197.268938 eV Core-core repulsion = 22670.508447 eV Total energy + Delta-G solvation = -3526.760491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49460 -38.44696 -37.92423 -36.97777 -35.06660 -33.88208 -31.94522 -30.92357 -29.77335 -28.72346 -27.88023 -26.58488 -24.43463 -23.92824 -23.40084 -20.17376 -19.71185 -19.49863 -18.33270 -17.97212 -17.01041 -16.81780 -16.64357 -16.43065 -15.95756 -15.79061 -15.45265 -15.06248 -14.58873 -14.44180 -14.20615 -13.93360 -13.88747 -13.80074 -13.73964 -13.41477 -13.10710 -12.98806 -12.93583 -12.86907 -12.75983 -12.71527 -12.58775 -12.47927 -12.24565 -12.14559 -12.08294 -11.89816 -11.82721 -11.49388 -11.35054 -11.14744 -10.87106 -10.83876 -10.62527 -10.50399 -9.19443 -8.13869 -6.20791 -0.85070 1.40896 1.41622 1.51841 1.92386 2.43799 2.79127 3.13638 3.20263 3.29261 3.54554 3.70363 3.94258 4.12056 4.15150 4.15789 4.21595 4.25550 4.33273 4.37254 4.40598 4.50810 4.59988 4.68808 4.78372 4.79239 4.92742 4.95932 4.98976 5.03370 5.07122 5.09221 5.15298 5.22853 5.23448 5.25285 5.32927 5.41864 5.53051 5.55554 5.60219 5.67646 5.89312 5.93756 6.15732 6.38139 6.64828 6.94818 7.46689 8.98497 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.002882 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.918154 B = 9713.429033 C =10100.365821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.109 4.109 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.083 3.917 14 N -0.677 5.677 15 C 0.092 3.908 16 H 0.071 0.929 17 C -0.152 4.152 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.555 4.555 21 H 0.153 0.847 22 S 2.415 3.585 23 C -0.641 4.641 24 O -0.981 6.981 25 O -0.992 6.992 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.038 0.962 33 H -0.020 1.020 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.019 0.981 37 H 0.051 0.949 38 H 0.347 0.653 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.158 0.842 46 H 0.137 0.863 47 H 0.152 0.848 48 H 0.086 0.914 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 3.593 23.300 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.056 4.056 3 C -0.166 4.166 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.185 1.185 13 C -0.046 4.046 14 N -0.312 5.312 15 C -0.019 4.019 16 H 0.089 0.911 17 C -0.191 4.191 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.666 4.666 21 H 0.171 0.829 22 S 2.604 3.396 23 C -0.793 4.793 24 O -0.978 6.978 25 O -0.989 6.989 26 C -0.134 4.134 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.057 0.943 33 H -0.001 1.001 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.170 0.830 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.106 0.894 45 H 0.176 0.824 46 H 0.155 0.845 47 H 0.170 0.830 48 H 0.104 0.896 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.793 4.322 23.682 25.989 hybrid contribution -0.632 -1.066 -1.880 2.252 sum -10.425 3.256 21.802 24.385 Atomic orbital electron populations 1.21676 0.94450 1.00461 1.01221 1.20498 0.95983 0.95914 0.93215 1.21522 0.99007 0.95469 1.00583 1.18996 0.93865 0.93986 0.92819 1.21633 1.30192 1.11858 0.91447 0.91535 1.25921 0.95753 0.95882 1.02593 1.70109 1.38947 1.24967 1.23993 0.85586 0.79155 0.78194 0.78972 1.20311 1.21297 1.18483 1.21800 0.98776 0.94441 0.89599 1.60652 1.17187 1.52984 1.00360 1.21434 0.98563 0.92459 0.89433 0.91089 1.22194 0.96783 0.97992 1.02129 1.21469 0.96207 0.99082 0.98469 1.21625 0.99040 0.94292 0.99927 1.30043 1.04304 1.13288 1.18923 0.82892 1.07760 0.79879 0.75604 0.76343 1.30137 1.21508 1.14082 1.13598 1.93519 1.81117 1.76152 1.47037 1.93543 1.73360 1.48877 1.83102 1.21346 0.93185 0.99725 0.99158 0.91205 0.94338 0.93557 0.91191 0.95451 0.94325 1.00130 0.99783 0.93212 0.96233 0.93053 0.82997 0.92955 0.90278 0.91679 0.89762 0.86998 0.89406 0.82356 0.84473 0.82951 0.89563 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 7.89 71.98 0.57 -3.52 16 2 C -0.06 -2.14 0.60 -52.18 -0.03 -2.18 16 3 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -28.19 7.65 25.60 0.20 -27.99 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 C 0.08 2.72 4.44 86.30 0.38 3.10 16 14 N -0.68 -16.66 4.98 -491.60 -2.45 -19.11 16 15 C 0.09 1.92 2.86 44.91 0.13 2.04 16 16 H 0.07 1.64 7.80 -2.39 -0.02 1.62 16 17 C -0.15 -2.58 5.52 30.59 0.17 -2.41 16 18 C -0.11 -1.38 5.67 30.59 0.17 -1.21 16 19 C -0.11 -0.95 4.91 30.59 0.15 -0.80 16 20 C -0.55 -7.20 2.38 30.59 0.07 -7.12 16 21 H 0.15 1.74 7.21 -2.39 -0.02 1.72 16 22 S 2.41 36.00 4.90 -56.49 -0.28 35.72 16 23 C -0.64 -3.06 10.01 113.37 1.14 -1.92 16 24 O -0.98 -21.26 18.06 -127.37 -2.30 -23.56 16 25 O -0.99 -24.67 18.10 -127.37 -2.30 -26.97 16 26 C -0.10 -1.75 4.91 30.59 0.15 -1.60 16 27 H 0.07 1.81 6.57 -2.39 -0.02 1.79 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.73 6.62 -2.38 -0.02 1.72 16 30 H 0.07 2.23 7.60 -2.39 -0.02 2.22 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 33 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.02 0.65 7.44 -2.39 -0.02 0.63 16 37 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 38 H 0.35 7.40 3.60 -89.69 -0.32 7.07 16 39 H 0.05 1.06 7.45 -2.39 -0.02 1.04 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 0.85 6.26 -2.38 -0.01 0.83 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.11 0.16 6.39 -2.39 -0.02 0.14 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.16 -0.09 6.78 -2.39 -0.02 -0.10 16 46 H 0.14 0.54 8.14 -2.39 -0.02 0.53 16 47 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -78.09 376.53 -0.16 -78.25 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.59 Total: 11.21 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 4.26 Total: -44.69 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.16 Total: -76.24 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -4.61 Total: -50.54 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 36.00 SS G_CDS: -0.28 Total: 35.72 kcal Total: -78.09 -0.16 -78.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.619 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds