Wall clock time and date at job start Tue Mar 31 2020 11:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.53007 * 109.47294 * 240.00461 * 2 1 3 5 5 C 1.50702 * 109.46743 * 59.99531 * 4 2 1 6 6 H 1.08001 * 120.00584 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99495 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99746 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47487 * 59.99805 * 9 7 5 11 11 H 1.48498 * 109.47251 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47354 * 299.99990 * 9 7 5 13 13 C 1.52998 * 109.47527 * 120.00110 * 2 1 3 14 14 N 1.46897 * 109.46970 * 299.99875 * 13 2 1 15 15 C 1.46904 * 111.00062 * 179.97438 * 14 13 2 16 16 H 1.09008 * 109.47174 * 325.00760 * 15 14 13 17 17 C 1.53002 * 109.46870 * 85.00137 * 15 14 13 18 18 C 1.53000 * 109.47233 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46700 * 300.00015 * 18 17 15 20 20 C 1.53002 * 109.47290 * 60.00019 * 19 18 17 21 21 H 1.08998 * 109.46699 * 59.99922 * 20 19 18 22 22 S 1.81391 * 109.47208 * 179.97438 * 20 19 18 23 23 C 1.81398 * 101.92304 * 304.99992 * 22 20 19 24 24 O 1.42105 * 108.57942 * 59.48865 * 22 20 19 25 25 O 1.42097 * 108.57959 * 190.51393 * 22 20 19 26 26 C 1.52992 * 109.47546 * 205.00481 * 15 14 13 27 27 H 1.08999 * 109.46866 * 299.99643 * 1 2 3 28 28 H 1.09000 * 109.47495 * 59.99850 * 1 2 3 29 29 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47099 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47064 * 300.00414 * 3 2 1 32 32 H 1.08999 * 109.46965 * 60.00418 * 3 2 1 33 33 H 1.08990 * 109.47084 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46446 * 299.99737 * 4 2 1 35 35 H 0.97008 * 119.99400 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47460 * 179.97438 * 13 2 1 37 37 H 1.09005 * 109.46768 * 60.00165 * 13 2 1 38 38 H 1.00890 * 111.00429 * 303.95436 * 14 13 2 39 39 H 1.08998 * 109.47222 * 60.00291 * 17 15 14 40 40 H 1.09010 * 109.47172 * 300.00021 * 17 15 14 41 41 H 1.09000 * 109.47427 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.47278 * 59.99714 * 18 17 15 43 43 H 1.08998 * 109.47010 * 299.99863 * 19 18 17 44 44 H 1.08998 * 109.46586 * 180.02562 * 19 18 17 45 45 H 1.08999 * 109.47426 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.47096 * 300.00087 * 23 22 20 47 47 H 1.09006 * 109.47169 * 59.99793 * 23 22 20 48 48 H 1.08996 * 109.47280 * 59.99976 * 26 15 14 49 49 H 1.09008 * 109.46807 * 299.99863 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9169 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 2.6256 -1.5518 -3.8527 9 14 1.2481 0.3990 -5.2572 10 1 1.7440 1.7988 -5.2572 11 1 1.7430 -0.3009 -6.4697 12 1 -0.2369 0.4001 -5.2571 13 6 2.0401 -0.7212 1.2492 14 7 1.5505 -0.0288 2.4486 15 6 2.0211 -0.6952 3.6703 16 1 2.0602 -1.7719 3.5047 17 6 3.4184 -0.1827 4.0248 18 6 3.9089 -0.8772 5.2968 19 6 2.9469 -0.5731 6.4472 20 6 1.5496 -1.0856 6.0926 21 1 1.5888 -2.1622 5.9267 22 16 0.4094 -0.7258 7.4567 23 6 1.2512 -1.5020 8.8635 24 8 0.3817 0.6797 7.6648 25 8 -0.8100 -1.4164 7.2216 26 6 1.0591 -0.3907 4.8203 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7208 -1.2495 34 1 1.6767 -1.7488 -1.2493 35 1 2.8600 -1.8831 -4.7338 36 1 3.1301 -0.7216 1.2489 37 1 1.6767 -1.7490 1.2491 38 1 1.8198 0.9435 2.4401 39 1 3.3793 0.8940 4.1904 40 1 4.1038 -0.3997 3.2054 41 1 4.9041 -0.5117 5.5497 42 1 3.9480 -1.9538 5.1309 43 1 2.9077 0.5035 6.6130 44 1 3.2966 -1.0675 7.3534 45 1 0.6592 -1.3558 9.7670 46 1 1.3677 -2.5689 8.6736 47 1 2.2331 -1.0471 8.9954 48 1 0.0637 -0.7559 4.5677 49 1 1.0200 0.6860 4.9858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353530401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:48 Heat of formation + Delta-G solvation = -101.453256 kcal Electronic energy + Delta-G solvation = -25626.187780 eV Core-core repulsion = 22100.312668 eV Total energy + Delta-G solvation = -3525.875112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.31433 -37.33035 -37.10234 -36.29836 -34.04897 -32.20587 -31.33234 -30.26529 -28.77476 -26.84670 -26.31716 -25.07044 -23.43670 -22.69740 -21.75906 -20.41566 -19.06522 -17.91596 -17.23161 -16.42630 -16.23475 -16.19545 -15.40350 -15.18583 -14.86640 -14.53540 -14.29499 -14.10148 -13.64848 -13.58672 -13.40218 -13.14134 -13.00467 -12.63829 -12.41869 -12.32190 -12.26533 -12.04566 -11.97541 -11.87836 -11.51443 -11.40892 -11.29559 -11.08199 -10.97347 -10.90239 -10.78268 -10.62221 -10.46445 -10.34717 -10.19249 -10.07235 -9.67446 -9.00567 -8.83062 -8.30880 -8.08194 -5.95720 -3.95676 -0.35133 2.39323 3.29008 3.35399 3.39906 3.42406 3.61963 4.00201 4.09041 4.36635 4.47085 4.50161 4.56871 4.65938 4.74468 4.83260 4.98068 5.06825 5.18422 5.22687 5.31092 5.40156 5.53025 5.59750 5.63607 5.70182 5.75285 5.79105 5.85698 5.97437 6.04681 6.10460 6.27688 6.34139 6.51483 6.67805 6.80330 6.84683 7.21986 7.23053 7.28039 7.39548 7.66170 7.71175 7.86047 8.04572 8.49135 9.09476 9.67049 11.15940 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002478 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.756190 B =11298.912515 C =11668.769221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.071 3.929 14 N -0.683 5.683 15 C 0.097 3.903 16 H 0.079 0.921 17 C -0.154 4.154 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.564 4.564 21 H 0.138 0.862 22 S 2.417 3.583 23 C -0.660 4.660 24 O -0.937 6.937 25 O -0.939 6.939 26 C -0.094 4.094 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.065 0.935 38 H 0.341 0.659 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.086 0.914 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -0.071 26.024 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.057 4.057 14 N -0.314 5.314 15 C -0.015 4.015 16 H 0.097 0.903 17 C -0.193 4.193 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.674 4.674 21 H 0.156 0.844 22 S 2.600 3.400 23 C -0.809 4.809 24 O -0.934 6.934 25 O -0.936 6.936 26 C -0.133 4.133 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.160 0.840 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.105 0.895 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.981 -0.054 25.889 25.907 hybrid contribution 1.518 0.040 -0.897 1.764 sum 2.499 -0.014 24.992 25.117 Atomic orbital electron populations 1.21604 0.94970 1.00603 1.00226 1.20635 0.95890 0.94985 0.94397 1.21771 0.99622 0.96777 1.00454 1.19115 0.95816 0.95187 0.90200 1.21205 1.30785 1.11914 0.90618 0.92344 1.25015 0.95412 0.95120 0.99056 1.69957 1.37316 1.23175 1.23378 0.86722 0.79230 0.79756 0.82663 1.20373 1.21465 1.20290 1.22133 0.96391 0.97996 0.89208 1.60595 1.63348 1.06531 1.00910 1.21423 0.90987 0.99298 0.89766 0.90279 1.22339 0.98328 1.00753 0.97849 1.21388 0.97980 1.01088 0.94131 1.21511 0.91523 1.02411 0.99417 1.30197 1.11327 1.10548 1.15355 0.84411 1.08075 0.77222 0.76159 0.78505 1.30328 1.15323 1.14482 1.20767 1.93589 1.86645 1.28452 1.84741 1.93607 1.39860 1.75802 1.84356 1.21323 1.00448 1.00762 0.90741 0.93825 0.92706 0.94182 0.94161 0.91726 0.94782 0.96987 0.96718 0.93128 0.95780 0.91612 0.83956 0.91503 0.91350 0.91393 0.91511 0.89760 0.90759 0.85377 0.85314 0.85195 0.89521 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 2 C -0.06 -1.15 0.60 -154.50 -0.09 -1.24 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.83 7.65 -34.44 -0.26 -14.10 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.18 4.45 -3.83 -0.02 1.16 16 14 N -0.68 -9.34 5.46 -106.72 -0.58 -9.92 16 15 C 0.10 1.06 2.47 -67.71 -0.17 0.89 16 16 H 0.08 0.89 7.80 -51.92 -0.40 0.49 16 17 C -0.15 -1.44 5.17 -26.73 -0.14 -1.58 16 18 C -0.11 -0.74 5.92 -26.73 -0.16 -0.90 16 19 C -0.11 -0.62 4.91 -26.73 -0.13 -0.75 16 20 C -0.56 -3.84 2.62 -26.71 -0.07 -3.91 16 21 H 0.14 0.67 8.14 -51.92 -0.42 0.24 16 22 S 2.42 18.69 4.90 -107.50 -0.53 18.16 16 23 C -0.66 -2.42 10.01 101.05 1.01 -1.41 16 24 O -0.94 -10.55 18.06 -57.83 -1.04 -11.59 16 25 O -0.94 -11.12 18.10 -57.83 -1.05 -12.17 16 26 C -0.09 -0.93 4.81 -26.71 -0.13 -1.05 16 27 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 32 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 37 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.34 4.50 6.51 -39.30 -0.26 4.24 16 39 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.07 0.72 7.46 -51.92 -0.39 0.34 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.20 6.39 -51.93 -0.33 -0.13 16 45 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.13 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.13 0.24 6.77 -51.92 -0.35 -0.11 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -34.81 382.38 -10.38 -45.19 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.89 Total: -1.23 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 0.23 Total: -24.72 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.15 Total: -36.02 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -2.09 Total: -23.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 18.69 SS G_CDS: -0.53 Total: 18.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.81 -10.38 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353530401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.267 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds