Wall clock time and date at job start Tue Mar 31 2020 11:32:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53005 * 109.47109 * 2 1
4 4 C 1.53007 * 109.47294 * 240.00461 * 2 1 3
5 5 C 1.50702 * 109.46743 * 59.99531 * 4 2 1
6 6 H 1.08001 * 120.00584 * 0.02562 * 5 4 2
7 7 C 1.37885 * 119.99495 * 180.02562 * 5 4 2
8 8 N 1.31510 * 119.99784 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 119.99746 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47487 * 59.99805 * 9 7 5
11 11 H 1.48498 * 109.47251 * 179.97438 * 9 7 5
12 12 H 1.48505 * 109.47354 * 299.99990 * 9 7 5
13 13 C 1.52998 * 109.47527 * 120.00110 * 2 1 3
14 14 N 1.46897 * 109.46970 * 299.99875 * 13 2 1
15 15 C 1.46904 * 111.00062 * 179.97438 * 14 13 2
16 16 H 1.09008 * 109.47174 * 325.00760 * 15 14 13
17 17 C 1.53002 * 109.46870 * 85.00137 * 15 14 13
18 18 C 1.53000 * 109.47233 * 180.02562 * 17 15 14
19 19 C 1.53008 * 109.46700 * 300.00015 * 18 17 15
20 20 C 1.53002 * 109.47290 * 60.00019 * 19 18 17
21 21 H 1.08998 * 109.46699 * 59.99922 * 20 19 18
22 22 S 1.81391 * 109.47208 * 179.97438 * 20 19 18
23 23 C 1.81398 * 101.92304 * 304.99992 * 22 20 19
24 24 O 1.42105 * 108.57942 * 59.48865 * 22 20 19
25 25 O 1.42097 * 108.57959 * 190.51393 * 22 20 19
26 26 C 1.52992 * 109.47546 * 205.00481 * 15 14 13
27 27 H 1.08999 * 109.46866 * 299.99643 * 1 2 3
28 28 H 1.09000 * 109.47495 * 59.99850 * 1 2 3
29 29 H 1.08997 * 109.47160 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47099 * 180.02562 * 3 2 1
31 31 H 1.09000 * 109.47064 * 300.00414 * 3 2 1
32 32 H 1.08999 * 109.46965 * 60.00418 * 3 2 1
33 33 H 1.08990 * 109.47084 * 179.97438 * 4 2 1
34 34 H 1.08997 * 109.46446 * 299.99737 * 4 2 1
35 35 H 0.97008 * 119.99400 * 180.02562 * 8 7 5
36 36 H 1.09000 * 109.47460 * 179.97438 * 13 2 1
37 37 H 1.09005 * 109.46768 * 60.00165 * 13 2 1
38 38 H 1.00890 * 111.00429 * 303.95436 * 14 13 2
39 39 H 1.08998 * 109.47222 * 60.00291 * 17 15 14
40 40 H 1.09010 * 109.47172 * 300.00021 * 17 15 14
41 41 H 1.09000 * 109.47427 * 180.02562 * 18 17 15
42 42 H 1.08998 * 109.47278 * 59.99714 * 18 17 15
43 43 H 1.08998 * 109.47010 * 299.99863 * 19 18 17
44 44 H 1.08998 * 109.46586 * 180.02562 * 19 18 17
45 45 H 1.08999 * 109.47426 * 179.97438 * 23 22 20
46 46 H 1.08998 * 109.47096 * 300.00087 * 23 22 20
47 47 H 1.09006 * 109.47169 * 59.99793 * 23 22 20
48 48 H 1.08996 * 109.47280 * 59.99976 * 26 15 14
49 49 H 1.09008 * 109.46807 * 299.99863 * 26 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.5376 -0.0107 -2.4797
6 1 0.9169 0.8676 -2.3806
7 6 1.8703 -0.4820 -3.7321
8 7 2.6256 -1.5518 -3.8527
9 14 1.2481 0.3990 -5.2572
10 1 1.7440 1.7988 -5.2572
11 1 1.7430 -0.3009 -6.4697
12 1 -0.2369 0.4001 -5.2571
13 6 2.0401 -0.7212 1.2492
14 7 1.5505 -0.0288 2.4486
15 6 2.0211 -0.6952 3.6703
16 1 2.0602 -1.7719 3.5047
17 6 3.4184 -0.1827 4.0248
18 6 3.9089 -0.8772 5.2968
19 6 2.9469 -0.5731 6.4472
20 6 1.5496 -1.0856 6.0926
21 1 1.5888 -2.1622 5.9267
22 16 0.4094 -0.7258 7.4567
23 6 1.2512 -1.5020 8.8635
24 8 0.3817 0.6797 7.6648
25 8 -0.8100 -1.4164 7.2216
26 6 1.0591 -0.3907 4.8203
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0276 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9564 -0.8899
32 1 1.6767 1.9563 0.8900
33 1 3.1299 -0.7208 -1.2495
34 1 1.6767 -1.7488 -1.2493
35 1 2.8600 -1.8831 -4.7338
36 1 3.1301 -0.7216 1.2489
37 1 1.6767 -1.7490 1.2491
38 1 1.8198 0.9435 2.4401
39 1 3.3793 0.8940 4.1904
40 1 4.1038 -0.3997 3.2054
41 1 4.9041 -0.5117 5.5497
42 1 3.9480 -1.9538 5.1309
43 1 2.9077 0.5035 6.6130
44 1 3.2966 -1.0675 7.3534
45 1 0.6592 -1.3558 9.7670
46 1 1.3677 -2.5689 8.6736
47 1 2.2331 -1.0471 8.9954
48 1 0.0637 -0.7559 4.5677
49 1 1.0200 0.6860 4.9858
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000353530401.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:32:48
Heat of formation + Delta-G solvation = -101.453256 kcal
Electronic energy + Delta-G solvation = -25626.187780 eV
Core-core repulsion = 22100.312668 eV
Total energy + Delta-G solvation = -3525.875112 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.181 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-39.31433 -37.33035 -37.10234 -36.29836 -34.04897 -32.20587 -31.33234 -30.26529
-28.77476 -26.84670 -26.31716 -25.07044 -23.43670 -22.69740 -21.75906 -20.41566
-19.06522 -17.91596 -17.23161 -16.42630 -16.23475 -16.19545 -15.40350 -15.18583
-14.86640 -14.53540 -14.29499 -14.10148 -13.64848 -13.58672 -13.40218 -13.14134
-13.00467 -12.63829 -12.41869 -12.32190 -12.26533 -12.04566 -11.97541 -11.87836
-11.51443 -11.40892 -11.29559 -11.08199 -10.97347 -10.90239 -10.78268 -10.62221
-10.46445 -10.34717 -10.19249 -10.07235 -9.67446 -9.00567 -8.83062 -8.30880
-8.08194 -5.95720 -3.95676 -0.35133 2.39323 3.29008 3.35399 3.39906
3.42406 3.61963 4.00201 4.09041 4.36635 4.47085 4.50161 4.56871
4.65938 4.74468 4.83260 4.98068 5.06825 5.18422 5.22687 5.31092
5.40156 5.53025 5.59750 5.63607 5.70182 5.75285 5.79105 5.85698
5.97437 6.04681 6.10460 6.27688 6.34139 6.51483 6.67805 6.80330
6.84683 7.21986 7.23053 7.28039 7.39548 7.66170 7.71175 7.86047
8.04572 8.49135 9.09476 9.67049 11.15940
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.029630 B = 0.002478 C = 0.002399
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.756190 B =11298.912515 C =11668.769221
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.059 4.059
3 C -0.129 4.129
4 C 0.034 3.966
5 C -0.507 4.507
6 H 0.058 0.942
7 C 0.054 3.946
8 N -0.898 5.898
9 Si 0.888 3.112
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.277 1.277
13 C 0.071 3.929
14 N -0.683 5.683
15 C 0.097 3.903
16 H 0.079 0.921
17 C -0.154 4.154
18 C -0.107 4.107
19 C -0.110 4.110
20 C -0.564 4.564
21 H 0.138 0.862
22 S 2.417 3.583
23 C -0.660 4.660
24 O -0.937 6.937
25 O -0.939 6.939
26 C -0.094 4.094
27 H 0.043 0.957
28 H 0.054 0.946
29 H 0.039 0.961
30 H 0.039 0.961
31 H 0.064 0.936
32 H 0.033 0.967
33 H 0.012 0.988
34 H 0.014 0.986
35 H 0.259 0.741
36 H 0.024 0.976
37 H 0.065 0.935
38 H 0.341 0.659
39 H 0.066 0.934
40 H 0.068 0.932
41 H 0.067 0.933
42 H 0.066 0.934
43 H 0.084 0.916
44 H 0.074 0.926
45 H 0.128 0.872
46 H 0.128 0.872
47 H 0.129 0.871
48 H 0.086 0.914
49 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.349 -0.071 26.024 26.130
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.059 4.059
3 C -0.186 4.186
4 C -0.003 4.003
5 C -0.545 4.545
6 H 0.077 0.923
7 C -0.146 4.146
8 N -0.538 5.538
9 Si 0.716 3.284
10 H -0.204 1.204
11 H -0.215 1.215
12 H -0.203 1.203
13 C -0.057 4.057
14 N -0.314 5.314
15 C -0.015 4.015
16 H 0.097 0.903
17 C -0.193 4.193
18 C -0.146 4.146
19 C -0.149 4.149
20 C -0.674 4.674
21 H 0.156 0.844
22 S 2.600 3.400
23 C -0.809 4.809
24 O -0.934 6.934
25 O -0.936 6.936
26 C -0.133 4.133
27 H 0.062 0.938
28 H 0.073 0.927
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.083 0.917
32 H 0.052 0.948
33 H 0.030 0.970
34 H 0.033 0.967
35 H 0.069 0.931
36 H 0.042 0.958
37 H 0.084 0.916
38 H 0.160 0.840
39 H 0.085 0.915
40 H 0.087 0.913
41 H 0.086 0.914
42 H 0.085 0.915
43 H 0.102 0.898
44 H 0.092 0.908
45 H 0.146 0.854
46 H 0.147 0.853
47 H 0.148 0.852
48 H 0.105 0.895
49 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 0.981 -0.054 25.889 25.907
hybrid contribution 1.518 0.040 -0.897 1.764
sum 2.499 -0.014 24.992 25.117
Atomic orbital electron populations
1.21604 0.94970 1.00603 1.00226 1.20635 0.95890 0.94985 0.94397
1.21771 0.99622 0.96777 1.00454 1.19115 0.95816 0.95187 0.90200
1.21205 1.30785 1.11914 0.90618 0.92344 1.25015 0.95412 0.95120
0.99056 1.69957 1.37316 1.23175 1.23378 0.86722 0.79230 0.79756
0.82663 1.20373 1.21465 1.20290 1.22133 0.96391 0.97996 0.89208
1.60595 1.63348 1.06531 1.00910 1.21423 0.90987 0.99298 0.89766
0.90279 1.22339 0.98328 1.00753 0.97849 1.21388 0.97980 1.01088
0.94131 1.21511 0.91523 1.02411 0.99417 1.30197 1.11327 1.10548
1.15355 0.84411 1.08075 0.77222 0.76159 0.78505 1.30328 1.15323
1.14482 1.20767 1.93589 1.86645 1.28452 1.84741 1.93607 1.39860
1.75802 1.84356 1.21323 1.00448 1.00762 0.90741 0.93825 0.92706
0.94182 0.94161 0.91726 0.94782 0.96987 0.96718 0.93128 0.95780
0.91612 0.83956 0.91503 0.91350 0.91393 0.91511 0.89760 0.90759
0.85377 0.85314 0.85195 0.89521 0.90100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16
2 C -0.06 -1.15 0.60 -154.50 -0.09 -1.24 16
3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16
4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16
5 C -0.51 -13.83 7.65 -34.44 -0.26 -14.10 16
6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16
7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16
8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16
9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16
10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16
12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
13 C 0.07 1.18 4.45 -3.83 -0.02 1.16 16
14 N -0.68 -9.34 5.46 -106.72 -0.58 -9.92 16
15 C 0.10 1.06 2.47 -67.71 -0.17 0.89 16
16 H 0.08 0.89 7.80 -51.92 -0.40 0.49 16
17 C -0.15 -1.44 5.17 -26.73 -0.14 -1.58 16
18 C -0.11 -0.74 5.92 -26.73 -0.16 -0.90 16
19 C -0.11 -0.62 4.91 -26.73 -0.13 -0.75 16
20 C -0.56 -3.84 2.62 -26.71 -0.07 -3.91 16
21 H 0.14 0.67 8.14 -51.92 -0.42 0.24 16
22 S 2.42 18.69 4.90 -107.50 -0.53 18.16 16
23 C -0.66 -2.42 10.01 101.05 1.01 -1.41 16
24 O -0.94 -10.55 18.06 -57.83 -1.04 -11.59 16
25 O -0.94 -11.12 18.10 -57.83 -1.05 -12.17 16
26 C -0.09 -0.93 4.81 -26.71 -0.13 -1.05 16
27 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16
28 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16
29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
31 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16
32 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16
33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16
35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
36 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16
37 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16
38 H 0.34 4.50 6.51 -39.30 -0.26 4.24 16
39 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16
40 H 0.07 0.72 7.46 -51.92 -0.39 0.34 16
41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
44 H 0.07 0.20 6.39 -51.93 -0.33 -0.13 16
45 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16
46 H 0.13 0.25 8.14 -51.93 -0.42 -0.18 16
47 H 0.13 0.24 6.77 -51.92 -0.35 -0.11 16
48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
49 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16
LS Contribution 382.38 15.07 5.76 5.76
Total: -1.00 -34.81 382.38 -10.38 -45.19
By element:
Atomic # 1 Polarization: 7.66 SS G_CDS: -8.89 Total: -1.23 kcal
Atomic # 6 Polarization: -24.95 SS G_CDS: 0.23 Total: -24.72 kcal
Atomic # 7 Polarization: -36.17 SS G_CDS: 0.15 Total: -36.02 kcal
Atomic # 8 Polarization: -21.67 SS G_CDS: -2.09 Total: -23.76 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal
Atomic # 16 Polarization: 18.69 SS G_CDS: -0.53 Total: 18.16 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -34.81 -10.38 -45.19 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000353530401.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.267 kcal
(2) G-P(sol) polarization free energy of solvation -34.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.453 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds