Wall clock time and date at job start Tue Mar 31 2020 11:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.52996 * 109.47138 * 119.99647 * 2 1 3 5 5 C 1.50696 * 109.47278 * 300.00309 * 4 2 1 6 6 H 1.08000 * 120.00185 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00121 * 179.72281 * 5 4 2 8 8 N 1.31516 * 119.99737 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00059 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47002 * 60.00190 * 9 7 5 11 11 H 1.48499 * 109.46857 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46746 * 299.99908 * 9 7 5 13 13 C 1.53000 * 109.47273 * 239.99911 * 2 1 3 14 14 N 1.46901 * 109.47251 * 66.98035 * 13 2 1 15 15 C 1.46843 * 110.99905 * 87.82442 * 14 13 2 16 16 C 1.53037 * 109.52173 * 174.16220 * 15 14 13 17 17 C 1.53122 * 109.27937 * 59.17905 * 16 15 14 18 18 C 1.53117 * 109.16183 * 302.34444 * 17 16 15 19 19 H 1.09002 * 109.50557 * 297.67880 * 18 17 16 20 20 C 1.52995 * 109.50635 * 177.59506 * 18 17 16 21 21 S 1.81403 * 109.47253 * 64.99994 * 20 18 17 22 22 C 1.81393 * 101.92286 * 180.02562 * 21 20 18 23 23 O 1.42102 * 108.57795 * 294.49285 * 21 20 18 24 24 O 1.42107 * 108.57568 * 65.51291 * 21 20 18 25 25 C 1.46849 * 110.99870 * 323.61638 * 14 13 2 26 26 H 1.08993 * 109.46994 * 262.13597 * 1 2 3 27 27 H 1.09002 * 109.46712 * 22.13667 * 1 2 3 28 28 H 1.09002 * 109.46689 * 142.13223 * 1 2 3 29 29 H 1.09000 * 109.46954 * 204.95107 * 3 2 1 30 30 H 1.09002 * 109.47228 * 324.94619 * 3 2 1 31 31 H 1.08990 * 109.47462 * 84.95065 * 3 2 1 32 32 H 1.08999 * 109.47185 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.46605 * 59.99978 * 4 2 1 34 34 H 0.97001 * 119.99423 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47361 * 186.98232 * 13 2 1 36 36 H 1.09006 * 109.47161 * 306.98181 * 13 2 1 37 37 H 1.09006 * 109.46164 * 294.17476 * 15 14 13 38 38 H 1.08997 * 109.46506 * 54.14970 * 15 14 13 39 39 H 1.08999 * 109.50335 * 179.12103 * 16 15 14 40 40 H 1.08995 * 109.50470 * 299.20065 * 16 15 14 41 41 H 1.08997 * 109.52137 * 62.25146 * 17 16 15 42 42 H 1.09005 * 109.52377 * 182.37709 * 17 16 15 43 43 H 1.09001 * 109.47403 * 185.00307 * 20 18 17 44 44 H 1.09003 * 109.47175 * 305.00568 * 20 18 17 45 45 H 1.08996 * 109.47512 * 60.00213 * 22 21 20 46 46 H 1.09003 * 109.47039 * 180.02562 * 22 21 20 47 47 H 1.09001 * 109.47083 * 300.00105 * 22 21 20 48 48 H 1.09004 * 109.46064 * 305.84958 * 25 14 13 49 49 H 1.08994 * 109.46664 * 65.82154 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8660 -0.4851 3.7320 8 7 2.6173 -1.5578 3.8526 9 14 1.2439 0.3959 5.2572 10 1 -0.2410 0.4023 5.2540 11 1 1.7328 -0.3084 6.4696 12 1 1.7450 1.7939 5.2602 13 6 2.0401 -0.7213 -1.2492 14 7 1.6927 0.0615 -2.4428 15 6 2.7342 1.0518 -2.7441 16 6 2.4118 1.7461 -4.0692 17 6 1.0462 2.4304 -3.9623 18 6 -0.0127 1.3854 -3.6002 19 1 -0.0762 0.6414 -4.3943 20 6 -1.3703 2.0706 -3.4325 21 16 -1.9010 2.7591 -5.0246 22 6 -3.4971 3.5069 -4.5962 23 8 -1.0005 3.7949 -5.3927 24 8 -2.1309 1.6863 -5.9277 25 6 0.3801 0.7016 -2.2886 26 1 -0.3633 -0.1406 1.0179 27 1 -0.3633 0.9519 -0.3873 28 1 -0.3633 -0.8113 -0.6308 29 1 3.0396 1.4745 -0.4335 30 1 1.3680 2.0655 -0.5902 31 1 2.0759 1.8152 1.0236 32 1 3.1300 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.8486 -1.8913 4.7337 35 1 3.1229 -0.8307 -1.1890 36 1 1.5783 -1.7066 -1.3139 37 1 2.7725 1.7930 -1.9457 38 1 3.6995 0.5516 -2.8217 39 1 3.1767 2.4920 -4.2848 40 1 2.3876 1.0076 -4.8705 41 1 1.0822 3.1961 -3.1874 42 1 0.7935 2.8906 -4.9176 43 1 -2.1049 1.3424 -3.0886 44 1 -1.2841 2.8734 -2.7002 45 1 -3.3481 4.2675 -3.8298 46 1 -3.9334 3.9656 -5.4836 47 1 -4.1693 2.7368 -4.2179 48 1 -0.3645 -0.0532 -2.0355 49 1 0.4294 1.4443 -1.4924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353642214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:46 Heat of formation + Delta-G solvation = -44.995509 kcal Electronic energy + Delta-G solvation = -26694.790665 eV Core-core repulsion = 23171.363745 eV Total energy + Delta-G solvation = -3523.426920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.26191 -37.22019 -36.63356 -36.12792 -33.66449 -32.54631 -31.18007 -30.00608 -28.16314 -27.16067 -26.69457 -26.09207 -23.24834 -22.16429 -21.64342 -19.57812 -19.07222 -18.22395 -17.01103 -16.37255 -16.28321 -16.14551 -15.24592 -15.20945 -14.86925 -14.47694 -14.29245 -13.99737 -13.65293 -13.63801 -13.52045 -13.06519 -12.95812 -12.67267 -12.31305 -12.20567 -12.14474 -12.10347 -12.04023 -11.45022 -11.38788 -11.27877 -10.98413 -10.92689 -10.84410 -10.71111 -10.61128 -10.53272 -10.44483 -10.18374 -9.96535 -9.73319 -9.71260 -9.30395 -9.02558 -8.37704 -7.58132 -6.02018 -4.02927 -0.27735 2.49364 3.28706 3.34498 3.35442 3.35646 3.73361 4.14659 4.38612 4.42331 4.43711 4.56797 4.65862 4.86598 5.08250 5.13669 5.26989 5.30834 5.33370 5.41683 5.48620 5.56131 5.62697 5.70983 5.77242 5.85226 5.93419 6.03247 6.07840 6.14508 6.22748 6.26751 6.31977 6.35840 6.40748 6.50383 6.58657 6.69394 7.01010 7.11989 7.25377 7.47434 7.51977 7.65099 7.78815 7.96766 8.40689 9.02128 9.59759 11.09092 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.003300 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.616190 B = 8482.515342 C = 9240.442182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.534 5.534 15 C 0.032 3.968 16 C -0.114 4.114 17 C -0.144 4.144 18 C -0.077 4.077 19 H 0.089 0.911 20 C -0.602 4.602 21 S 2.418 3.582 22 C -0.660 4.660 23 O -0.937 6.937 24 O -0.940 6.940 25 C 0.035 3.965 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.088 0.912 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 9.250 -16.316 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.205 4.205 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.064 4.064 14 N -0.257 5.257 15 C -0.095 4.095 16 C -0.152 4.152 17 C -0.181 4.181 18 C -0.097 4.097 19 H 0.107 0.893 20 C -0.732 4.732 21 S 2.601 3.399 22 C -0.809 4.809 23 O -0.934 6.934 24 O -0.938 6.938 25 C -0.093 4.093 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.107 0.893 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.410 8.792 -17.425 21.252 hybrid contribution -0.758 0.958 2.523 2.803 sum -9.168 9.750 -14.903 20.030 Atomic orbital electron populations 1.22682 0.95818 0.99568 1.02584 1.21169 0.95251 0.95591 0.97023 1.22435 0.99052 0.96296 1.02688 1.19101 0.95947 0.95138 0.89777 1.21163 1.31164 1.11902 0.90709 0.92493 1.25014 0.95365 0.95053 0.99024 1.69953 1.37194 1.22805 1.23495 0.86739 0.79140 0.79793 0.82788 1.20370 1.21369 1.20374 1.22446 1.00332 0.96552 0.87095 1.62156 1.01720 1.24591 1.37220 1.22564 0.95036 0.95061 0.96884 1.21544 0.96199 0.99219 0.98202 1.22084 0.95452 0.97420 1.03161 1.21034 0.89721 0.97531 1.01411 0.89259 1.30338 1.08193 1.12531 1.22146 1.07929 0.77422 0.76279 0.78290 1.30306 1.23789 1.14179 1.12661 1.93583 1.60807 1.57682 1.81353 1.93603 1.85484 1.54768 1.59910 1.23403 0.92461 0.98862 0.94578 0.91358 0.93194 0.93639 0.93396 0.93945 0.90901 0.96838 0.96614 0.93013 0.91631 0.91209 0.92500 0.91247 0.91589 0.91396 0.91432 0.89891 0.84721 0.84898 0.85331 0.85464 0.85369 0.89347 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 7.03 37.16 0.26 -2.32 16 2 C -0.09 -1.66 0.53 -154.51 -0.08 -1.74 16 3 C -0.15 -2.62 6.83 37.16 0.25 -2.36 16 4 C 0.04 0.92 4.01 -27.89 -0.11 0.81 16 5 C -0.51 -13.48 6.82 -34.44 -0.23 -13.71 16 6 H 0.06 1.46 6.45 -52.49 -0.34 1.12 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.06 1.06 4.81 -3.82 -0.02 1.04 16 14 N -0.53 -7.79 4.86 -234.67 -1.14 -8.93 16 15 C 0.03 0.43 4.76 -3.84 -0.02 0.42 16 16 C -0.11 -1.35 6.09 -26.65 -0.16 -1.51 16 17 C -0.14 -1.65 4.83 -26.61 -0.13 -1.78 16 18 C -0.08 -0.86 2.35 -90.54 -0.21 -1.07 16 19 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.60 -4.54 5.27 37.15 0.20 -4.35 16 21 S 2.42 19.24 5.15 -107.50 -0.55 18.69 16 22 C -0.66 -2.92 10.62 101.05 1.07 -1.84 16 23 O -0.94 -10.42 15.51 -57.83 -0.90 -11.31 16 24 O -0.94 -11.16 18.10 -57.83 -1.05 -12.21 16 25 C 0.03 0.46 2.65 -3.83 -0.01 0.45 16 26 H 0.07 1.36 6.41 -51.93 -0.33 1.03 16 27 H 0.05 0.74 5.07 -51.93 -0.26 0.47 16 28 H 0.04 0.72 6.03 -51.93 -0.31 0.41 16 29 H 0.05 0.81 5.86 -51.93 -0.30 0.51 16 30 H 0.04 0.66 4.87 -51.93 -0.25 0.40 16 31 H 0.07 1.47 6.24 -51.93 -0.32 1.14 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16 36 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16 37 H 0.06 0.80 4.32 -51.93 -0.22 0.57 16 38 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.96 5.58 -51.93 -0.29 0.67 16 43 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.13 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 48 H 0.09 1.17 5.42 -51.93 -0.28 0.89 16 49 H 0.08 1.04 2.60 -51.93 -0.14 0.90 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -33.87 360.05 -9.85 -43.72 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.07 Total: 0.60 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 0.71 Total: -26.51 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.40 Total: -34.43 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.94 Total: -23.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.55 Total: 18.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.87 -9.85 -43.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353642214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.276 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds