Wall clock time and date at job start Tue Mar 31 2020 11:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.52996 * 109.47138 * 119.99647 * 2 1 3 5 5 C 1.50696 * 109.47278 * 300.00309 * 4 2 1 6 6 H 1.08000 * 120.00185 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00121 * 179.72281 * 5 4 2 8 8 N 1.31516 * 119.99737 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00059 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47002 * 60.00190 * 9 7 5 11 11 H 1.48499 * 109.46857 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46746 * 299.99908 * 9 7 5 13 13 C 1.53000 * 109.47273 * 239.99911 * 2 1 3 14 14 N 1.46901 * 109.47251 * 66.98035 * 13 2 1 15 15 C 1.46843 * 110.99905 * 87.82442 * 14 13 2 16 16 C 1.53037 * 109.52173 * 174.16220 * 15 14 13 17 17 C 1.53122 * 109.27937 * 59.17905 * 16 15 14 18 18 C 1.53117 * 109.16183 * 302.34444 * 17 16 15 19 19 H 1.09002 * 109.50557 * 297.67880 * 18 17 16 20 20 C 1.52995 * 109.50635 * 177.59506 * 18 17 16 21 21 S 1.81403 * 109.47253 * 64.99994 * 20 18 17 22 22 C 1.81393 * 101.92286 * 180.02562 * 21 20 18 23 23 O 1.42102 * 108.57795 * 294.49285 * 21 20 18 24 24 O 1.42107 * 108.57568 * 65.51291 * 21 20 18 25 25 C 1.46849 * 110.99870 * 323.61638 * 14 13 2 26 26 H 1.08993 * 109.46994 * 262.13597 * 1 2 3 27 27 H 1.09002 * 109.46712 * 22.13667 * 1 2 3 28 28 H 1.09002 * 109.46689 * 142.13223 * 1 2 3 29 29 H 1.09000 * 109.46954 * 204.95107 * 3 2 1 30 30 H 1.09002 * 109.47228 * 324.94619 * 3 2 1 31 31 H 1.08990 * 109.47462 * 84.95065 * 3 2 1 32 32 H 1.08999 * 109.47185 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.46605 * 59.99978 * 4 2 1 34 34 H 0.97001 * 119.99423 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47361 * 186.98232 * 13 2 1 36 36 H 1.09006 * 109.47161 * 306.98181 * 13 2 1 37 37 H 1.09006 * 109.46164 * 294.17476 * 15 14 13 38 38 H 1.08997 * 109.46506 * 54.14970 * 15 14 13 39 39 H 1.08999 * 109.50335 * 179.12103 * 16 15 14 40 40 H 1.08995 * 109.50470 * 299.20065 * 16 15 14 41 41 H 1.08997 * 109.52137 * 62.25146 * 17 16 15 42 42 H 1.09005 * 109.52377 * 182.37709 * 17 16 15 43 43 H 1.09001 * 109.47403 * 185.00307 * 20 18 17 44 44 H 1.09003 * 109.47175 * 305.00568 * 20 18 17 45 45 H 1.08996 * 109.47512 * 60.00213 * 22 21 20 46 46 H 1.09003 * 109.47039 * 180.02562 * 22 21 20 47 47 H 1.09001 * 109.47083 * 300.00105 * 22 21 20 48 48 H 1.09004 * 109.46064 * 305.84958 * 25 14 13 49 49 H 1.08994 * 109.46664 * 65.82154 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8660 -0.4851 3.7320 8 7 2.6173 -1.5578 3.8526 9 14 1.2439 0.3959 5.2572 10 1 -0.2410 0.4023 5.2540 11 1 1.7328 -0.3084 6.4696 12 1 1.7450 1.7939 5.2602 13 6 2.0401 -0.7213 -1.2492 14 7 1.6927 0.0615 -2.4428 15 6 2.7342 1.0518 -2.7441 16 6 2.4118 1.7461 -4.0692 17 6 1.0462 2.4304 -3.9623 18 6 -0.0127 1.3854 -3.6002 19 1 -0.0762 0.6414 -4.3943 20 6 -1.3703 2.0706 -3.4325 21 16 -1.9010 2.7591 -5.0246 22 6 -3.4971 3.5069 -4.5962 23 8 -1.0005 3.7949 -5.3927 24 8 -2.1309 1.6863 -5.9277 25 6 0.3801 0.7016 -2.2886 26 1 -0.3633 -0.1406 1.0179 27 1 -0.3633 0.9519 -0.3873 28 1 -0.3633 -0.8113 -0.6308 29 1 3.0396 1.4745 -0.4335 30 1 1.3680 2.0655 -0.5902 31 1 2.0759 1.8152 1.0236 32 1 3.1300 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.8486 -1.8913 4.7337 35 1 3.1229 -0.8307 -1.1890 36 1 1.5783 -1.7066 -1.3139 37 1 2.7725 1.7930 -1.9457 38 1 3.6995 0.5516 -2.8217 39 1 3.1767 2.4920 -4.2848 40 1 2.3876 1.0076 -4.8705 41 1 1.0822 3.1961 -3.1874 42 1 0.7935 2.8906 -4.9176 43 1 -2.1049 1.3424 -3.0886 44 1 -1.2841 2.8734 -2.7002 45 1 -3.3481 4.2675 -3.8298 46 1 -3.9334 3.9656 -5.4836 47 1 -4.1693 2.7368 -4.2179 48 1 -0.3645 -0.0532 -2.0355 49 1 0.4294 1.4443 -1.4924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353642214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:45 Heat of formation + Delta-G solvation = -69.611532 kcal Electronic energy + Delta-G solvation = -26695.858096 eV Core-core repulsion = 23171.363745 eV Total energy + Delta-G solvation = -3524.494351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48023 -37.98799 -37.76223 -36.91101 -35.09736 -34.05552 -32.48923 -30.40970 -29.39073 -28.73589 -28.20580 -27.13537 -24.98244 -23.35456 -22.72229 -20.60211 -19.84291 -19.64382 -18.25500 -17.65239 -17.05898 -16.94457 -16.62364 -16.34163 -16.17787 -15.79361 -15.53955 -15.05247 -14.76951 -14.44571 -14.23712 -14.06403 -14.00990 -13.86342 -13.62657 -13.46849 -13.12762 -12.98987 -12.94461 -12.87762 -12.63197 -12.56558 -12.53211 -12.17045 -12.08082 -12.01660 -11.90739 -11.74336 -11.63949 -11.47991 -11.31460 -11.25504 -11.07399 -10.81640 -10.58035 -10.50161 -8.84736 -8.13434 -6.21225 -0.83664 1.40522 1.42145 1.49588 1.97595 2.43013 2.76448 3.14152 3.19611 3.20481 3.68326 3.75871 3.92370 4.08409 4.13470 4.15208 4.19904 4.24884 4.28529 4.35139 4.44337 4.55898 4.69015 4.73036 4.77927 4.82809 4.86963 4.91447 4.97467 5.00111 5.03283 5.05394 5.10753 5.17183 5.20673 5.24126 5.33483 5.43627 5.50584 5.55632 5.61764 5.67154 5.87073 5.91263 6.24848 6.32975 6.36459 6.93694 7.45757 8.97764 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.003300 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.616190 B = 8482.515342 C = 9240.442182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.141 4.141 4 C 0.045 3.955 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.072 3.928 14 N -0.535 5.535 15 C 0.031 3.969 16 C -0.112 4.112 17 C -0.146 4.146 18 C -0.079 4.079 19 H 0.078 0.922 20 C -0.601 4.601 21 S 2.420 3.580 22 C -0.641 4.641 23 O -0.976 6.976 24 O -0.990 6.990 25 C 0.033 3.967 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.046 0.954 32 H -0.020 1.020 33 H -0.016 1.016 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.135 0.865 47 H 0.151 0.849 48 H 0.090 0.910 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 11.585 -16.512 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.197 4.197 4 C 0.007 3.993 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.216 1.216 12 H -0.194 1.194 13 C -0.056 4.056 14 N -0.258 5.258 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.183 4.183 18 C -0.099 4.099 19 H 0.096 0.904 20 C -0.731 4.731 21 S 2.608 3.392 22 C -0.794 4.794 23 O -0.973 6.973 24 O -0.987 6.987 25 C -0.095 4.095 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.065 0.935 32 H -0.001 1.001 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.178 0.822 44 H 0.177 0.823 45 H 0.171 0.829 46 H 0.153 0.847 47 H 0.169 0.831 48 H 0.109 0.891 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.785 11.130 -17.658 23.495 hybrid contribution -0.027 0.227 2.551 2.561 sum -10.812 11.357 -15.108 21.775 Atomic orbital electron populations 1.22664 0.94222 1.01944 1.01242 1.21067 0.96554 0.95848 0.95029 1.22370 1.00120 0.95642 1.01601 1.18973 0.93763 0.94077 0.92472 1.21553 1.30327 1.11809 0.91379 0.91524 1.25920 0.95746 0.95845 1.02580 1.70108 1.39037 1.24717 1.24076 0.85650 0.79009 0.78732 0.78563 1.19142 1.21608 1.19353 1.22237 0.99496 0.96560 0.87310 1.62180 1.02889 1.25367 1.35335 1.22598 0.94652 0.94690 0.97715 1.21545 0.97184 0.99348 0.96919 1.22119 0.95155 0.97632 1.03433 1.20974 0.91739 0.97398 0.99766 0.90372 1.30318 1.06609 1.13808 1.22402 1.07526 0.78501 0.75217 0.77996 1.30116 1.20152 1.15130 1.13954 1.93531 1.63251 1.58254 1.82285 1.93544 1.86489 1.56567 1.62077 1.23429 0.91506 0.98793 0.95764 0.94264 0.89901 0.92397 0.93074 0.90936 0.93467 1.00146 0.99772 0.93202 0.92755 0.91907 0.92699 0.91630 0.90253 0.91882 0.90613 0.90046 0.82186 0.82291 0.82855 0.84654 0.83073 0.89144 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 7.03 71.98 0.51 -4.23 16 2 C -0.08 -3.11 0.53 -52.18 -0.03 -3.14 16 3 C -0.14 -4.81 6.83 71.98 0.49 -4.32 16 4 C 0.04 2.26 4.01 29.85 0.12 2.38 16 5 C -0.51 -27.39 6.82 25.60 0.17 -27.22 16 6 H 0.07 3.37 6.45 -2.91 -0.02 3.35 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 9 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 C 0.07 2.43 4.81 86.30 0.41 2.85 16 14 N -0.53 -15.02 4.86 -896.35 -4.35 -19.37 16 15 C 0.03 0.80 4.76 86.33 0.41 1.21 16 16 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 17 C -0.15 -3.05 4.83 30.67 0.15 -2.91 16 18 C -0.08 -1.58 2.35 -10.74 -0.03 -1.60 16 19 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 20 C -0.60 -6.93 5.27 71.98 0.38 -6.55 16 21 S 2.42 33.21 5.15 -56.49 -0.29 32.92 16 22 C -0.64 -2.90 10.62 113.37 1.20 -1.70 16 23 O -0.98 -20.30 15.51 -127.37 -1.98 -22.28 16 24 O -0.99 -22.67 18.10 -127.37 -2.31 -24.97 16 25 C 0.03 0.77 2.65 86.33 0.23 1.00 16 26 H 0.04 1.52 6.41 -2.39 -0.02 1.50 16 27 H 0.08 2.17 5.07 -2.39 -0.01 2.15 16 28 H 0.06 1.74 6.03 -2.39 -0.01 1.73 16 29 H 0.05 1.69 5.86 -2.39 -0.01 1.68 16 30 H 0.07 2.03 4.87 -2.39 -0.01 2.02 16 31 H 0.05 1.85 6.24 -2.39 -0.01 1.84 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.05 1.93 7.66 -2.39 -0.02 1.91 16 36 H 0.06 2.19 7.96 -2.38 -0.02 2.17 16 37 H 0.06 1.44 4.32 -2.38 -0.01 1.43 16 38 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.78 5.58 -2.38 -0.01 1.77 16 43 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.16 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.09 2.13 5.42 -2.39 -0.01 2.12 16 49 H 0.08 1.77 2.60 -2.39 -0.01 1.76 16 Total: -1.00 -76.32 360.05 -1.01 -77.33 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.94 Total: 13.76 kcal Atomic # 6 Polarization: -50.97 SS G_CDS: 4.67 Total: -46.29 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -4.07 Total: -75.77 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -4.28 Total: -47.25 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 33.21 SS G_CDS: -0.29 Total: 32.92 kcal Total: -76.32 -1.01 -77.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353642214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.714 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds