Wall clock time and date at job start Tue Mar 31 2020 12:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 C 1.52995 * 109.47550 * 239.99672 * 2 1 3 5 5 C 1.50709 * 109.47004 * 119.99407 * 2 1 3 6 6 O 1.20760 * 119.99820 * 0.02562 * 5 2 1 7 7 C 1.50696 * 119.99951 * 180.02562 * 5 2 1 8 8 N 1.46506 * 109.47028 * 180.02562 * 7 5 2 9 9 C 1.34769 * 119.99929 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.08994 * 109.47382 * 300.00272 * 1 2 3 29 29 H 1.09003 * 109.46971 * 60.00849 * 1 2 3 30 30 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47531 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46991 * 299.99659 * 3 2 1 33 33 H 1.09001 * 109.47572 * 59.99640 * 3 2 1 34 34 H 1.09006 * 109.46934 * 300.00070 * 4 2 1 35 35 H 1.08994 * 109.47109 * 60.00299 * 4 2 1 36 36 H 1.09000 * 109.47356 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47050 * 60.00427 * 7 5 2 38 38 H 1.08996 * 109.47030 * 300.00072 * 7 5 2 39 39 H 0.97005 * 119.99423 * 0.02562 * 8 7 5 40 40 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 41 41 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 42 42 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 44 44 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 45 45 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 46 46 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2475 -1.1696 2.0253 7 6 3.5139 -0.8475 1.4694 8 7 3.7416 -1.5716 2.7225 9 6 4.9993 -1.8139 3.1418 10 8 5.9426 -1.4320 2.4821 11 6 5.2335 -2.5582 4.4310 12 6 6.7377 -2.6976 4.6734 13 1 7.2056 -1.7142 4.6292 14 6 7.3368 -3.5872 3.6146 15 1 6.7719 -4.4226 3.2283 16 6 8.6062 -3.3344 3.1394 17 7 9.1183 -4.0940 2.1958 18 14 9.5985 -1.9132 3.8357 19 1 9.3813 -0.7030 3.0030 20 1 9.1622 -1.6405 5.2287 21 1 11.0409 -2.2664 3.8290 22 6 6.9734 -3.3052 6.0322 23 6 6.5915 -4.6102 6.2815 24 6 6.8113 -5.1688 7.5267 25 6 7.4054 -4.4198 8.5252 26 6 7.7824 -3.1131 8.2775 27 6 7.5663 -2.5558 7.0311 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1391 36 1 3.1301 -0.7217 -1.2489 37 1 3.9646 0.1428 1.5346 38 1 3.9653 -1.3986 0.6445 39 1 2.9870 -1.8773 3.2499 40 1 4.7823 -3.5484 4.3660 41 1 4.7823 -2.0069 5.2560 42 1 10.0111 -3.9160 1.8612 43 1 6.1240 -5.1943 5.5026 44 1 6.5164 -6.1895 7.7204 45 1 7.5745 -4.8553 9.4989 46 1 8.2462 -2.5277 9.0577 47 1 7.8612 -1.5350 6.8375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356601824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:28 Heat of formation + Delta-G solvation = -64.414295 kcal Electronic energy + Delta-G solvation = -26445.594996 eV Core-core repulsion = 22785.882062 eV Total energy + Delta-G solvation = -3659.712934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43892 -39.03915 -38.25208 -36.04168 -34.40275 -33.75289 -31.65995 -30.19561 -29.56718 -28.29327 -27.65371 -27.09862 -25.61043 -23.02051 -22.33064 -21.81410 -20.23392 -19.39914 -18.47696 -16.93164 -16.83214 -16.36626 -16.08298 -15.68344 -15.36856 -14.68037 -14.64291 -14.29265 -14.19359 -13.88638 -13.78401 -13.64514 -12.97651 -12.73769 -12.60644 -12.55194 -12.52188 -12.46452 -12.38476 -12.27855 -11.99464 -11.84362 -11.66184 -11.26353 -11.17728 -11.02790 -10.74260 -10.51797 -10.35072 -9.86776 -9.71169 -9.60102 -9.17435 -8.97768 -8.70510 -8.41455 -8.18426 -7.79960 -5.96760 -3.94234 1.71255 2.11469 2.16160 3.34050 3.43706 3.44757 3.49160 3.51369 3.92732 4.38580 4.53481 4.53749 4.60011 4.63077 5.13760 5.27622 5.29001 5.31904 5.36899 5.43861 5.47278 5.52719 5.53430 5.55223 5.57745 5.63857 5.69960 5.74832 5.82167 5.92970 5.95777 5.96420 6.03328 6.11273 6.26770 6.34726 6.62080 6.70648 6.75903 6.85070 7.03080 7.15994 7.24318 7.28668 7.59244 7.74571 7.84264 7.99669 8.54504 8.95155 9.02293 9.68121 11.16257 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003364 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.163341 B = 8320.776482 C = 9352.104306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.362 3.638 6 O -0.448 6.448 7 C 0.070 3.930 8 N -0.744 5.744 9 C 0.516 3.484 10 O -0.501 6.501 11 C -0.116 4.116 12 C 0.057 3.943 13 H 0.050 0.950 14 C -0.488 4.488 15 H 0.071 0.929 16 C 0.086 3.914 17 N -0.900 5.900 18 Si 0.870 3.130 19 H -0.277 1.277 20 H -0.255 1.255 21 H -0.295 1.295 22 C -0.040 4.040 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.128 4.128 27 C -0.135 4.135 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.402 0.598 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.261 0.739 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 8.013 -0.128 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.237 3.763 6 O -0.320 6.320 7 C -0.055 4.055 8 N -0.402 5.402 9 C 0.303 3.697 10 O -0.373 6.373 11 C -0.156 4.156 12 C 0.037 3.963 13 H 0.068 0.932 14 C -0.525 4.525 15 H 0.089 0.911 16 C -0.116 4.116 17 N -0.537 5.537 18 Si 0.698 3.302 19 H -0.202 1.202 20 H -0.180 1.180 21 H -0.222 1.222 22 C -0.041 4.041 23 C -0.118 4.118 24 C -0.146 4.146 25 C -0.167 4.167 26 C -0.146 4.146 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.296 8.013 -0.311 16.391 hybrid contribution 0.466 0.499 0.373 0.778 sum -13.829 8.512 0.062 16.239 Atomic orbital electron populations 1.21718 0.92458 1.02730 1.02132 1.21150 0.97830 0.97271 0.95094 1.21878 1.01994 0.93161 1.02847 1.21885 1.02107 1.00414 0.95572 1.24826 0.90882 0.75058 0.85541 1.90360 1.58778 1.38406 1.44481 1.21564 0.94188 0.99644 0.90086 1.45998 1.09282 1.60743 1.24182 1.20864 0.81391 0.79446 0.87960 1.90743 1.41187 1.49272 1.56109 1.21662 1.00849 0.99997 0.93103 1.18132 0.90613 0.97541 0.89999 0.93185 1.20602 1.00615 1.12892 1.18428 0.91128 1.24877 0.97372 0.95461 0.93926 1.69890 1.16609 1.39235 1.28010 0.86957 0.78810 0.83731 0.80717 1.20250 1.17952 1.22164 1.20753 0.93854 0.94072 0.95393 1.20988 0.99913 0.95154 0.95757 1.21060 1.00434 0.99091 0.94049 1.20864 1.02191 0.94900 0.98761 1.20962 1.01155 0.95595 0.96879 1.21146 1.01202 0.99859 0.93092 0.92105 0.91923 0.92036 0.91311 0.91216 0.92141 0.92011 0.91224 0.91216 0.88406 0.88080 0.76226 0.89628 0.91230 0.92908 0.86172 0.87189 0.87449 0.87410 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 7.76 37.16 0.29 -0.80 16 2 C -0.11 -0.96 0.87 -155.66 -0.14 -1.10 16 3 C -0.14 -1.02 8.25 37.16 0.31 -0.71 16 4 C -0.14 -1.10 8.26 37.15 0.31 -0.79 16 5 C 0.36 4.13 6.04 -29.03 -0.18 3.96 16 6 O -0.45 -6.13 15.29 6.00 0.09 -6.03 16 7 C 0.07 0.92 5.43 -5.19 -0.03 0.89 16 8 N -0.74 -11.55 5.53 -61.47 -0.34 -11.89 16 9 C 0.52 10.16 7.58 -10.99 -0.08 10.07 16 10 O -0.50 -12.09 15.02 5.55 0.08 -12.01 16 11 C -0.12 -2.19 4.96 -27.88 -0.14 -2.33 16 12 C 0.06 1.29 1.17 -92.92 -0.11 1.18 16 13 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 14 C -0.49 -13.36 6.88 -34.44 -0.24 -13.60 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 17 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 18 Si 0.87 22.51 27.00 -169.99 -4.59 17.92 16 19 H -0.28 -7.30 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.10 4.72 56.52 0.27 -5.83 16 21 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 22 C -0.04 -0.84 4.65 -104.62 -0.49 -1.33 16 23 C -0.10 -1.97 8.93 -39.58 -0.35 -2.32 16 24 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 25 C -0.15 -2.45 10.05 -39.58 -0.40 -2.84 16 26 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 27 C -0.13 -2.65 8.70 -39.59 -0.34 -2.99 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.07 0.49 7.28 -51.93 -0.38 0.12 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.55 7.28 -51.93 -0.38 0.17 16 37 H 0.10 1.22 7.38 -51.93 -0.38 0.84 16 38 H 0.10 1.37 7.38 -51.93 -0.38 0.98 16 39 H 0.40 5.61 7.44 -40.82 -0.30 5.31 16 40 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.12 2.35 7.87 -52.49 -0.41 1.94 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 47 H 0.11 2.13 7.12 -52.48 -0.37 1.76 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -34.10 381.17 -8.34 -42.44 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.63 Total: 6.60 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.48 Total: -15.51 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.43 Total: -39.15 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.18 Total: -18.05 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.59 Total: 17.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.10 -8.34 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356601824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.972 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds