Wall clock time and date at job start Tue Mar 31 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 C 1.52995 * 109.47550 * 239.99672 * 2 1 3 5 5 C 1.50709 * 109.47004 * 119.99407 * 2 1 3 6 6 O 1.20760 * 119.99820 * 0.02562 * 5 2 1 7 7 C 1.50696 * 119.99951 * 180.02562 * 5 2 1 8 8 N 1.46506 * 109.47028 * 180.02562 * 7 5 2 9 9 C 1.34769 * 119.99929 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.08994 * 109.47382 * 300.00272 * 1 2 3 29 29 H 1.09003 * 109.46971 * 60.00849 * 1 2 3 30 30 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47531 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46991 * 299.99659 * 3 2 1 33 33 H 1.09001 * 109.47572 * 59.99640 * 3 2 1 34 34 H 1.09006 * 109.46934 * 300.00070 * 4 2 1 35 35 H 1.08994 * 109.47109 * 60.00299 * 4 2 1 36 36 H 1.09000 * 109.47356 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47050 * 60.00427 * 7 5 2 38 38 H 1.08996 * 109.47030 * 300.00072 * 7 5 2 39 39 H 0.97005 * 119.99423 * 0.02562 * 8 7 5 40 40 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 41 41 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 42 42 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 44 44 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 45 45 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 46 46 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2475 -1.1696 2.0253 7 6 3.5139 -0.8475 1.4694 8 7 3.7416 -1.5716 2.7225 9 6 4.9993 -1.8139 3.1418 10 8 5.9426 -1.4320 2.4821 11 6 5.2335 -2.5582 4.4310 12 6 6.7377 -2.6976 4.6734 13 1 7.2056 -1.7142 4.6292 14 6 7.3368 -3.5872 3.6146 15 1 6.7719 -4.4226 3.2283 16 6 8.6062 -3.3344 3.1394 17 7 9.1183 -4.0940 2.1958 18 14 9.5985 -1.9132 3.8357 19 1 9.3813 -0.7030 3.0030 20 1 9.1622 -1.6405 5.2287 21 1 11.0409 -2.2664 3.8290 22 6 6.9734 -3.3052 6.0322 23 6 6.5915 -4.6102 6.2815 24 6 6.8113 -5.1688 7.5267 25 6 7.4054 -4.4198 8.5252 26 6 7.7824 -3.1131 8.2775 27 6 7.5663 -2.5558 7.0311 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1391 36 1 3.1301 -0.7217 -1.2489 37 1 3.9646 0.1428 1.5346 38 1 3.9653 -1.3986 0.6445 39 1 2.9870 -1.8773 3.2499 40 1 4.7823 -3.5484 4.3660 41 1 4.7823 -2.0069 5.2560 42 1 10.0111 -3.9160 1.8612 43 1 6.1240 -5.1943 5.5026 44 1 6.5164 -6.1895 7.7204 45 1 7.5745 -4.8553 9.4989 46 1 8.2462 -2.5277 9.0577 47 1 7.8612 -1.5350 6.8375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356601824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:27 Heat of formation + Delta-G solvation = -85.706568 kcal Electronic energy + Delta-G solvation = -26446.518298 eV Core-core repulsion = 22785.882062 eV Total energy + Delta-G solvation = -3660.636236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49375 -40.52180 -39.70814 -36.82252 -36.02427 -35.31191 -33.71629 -31.60399 -30.93378 -29.53768 -28.25005 -28.03355 -27.27608 -24.46803 -23.53535 -23.21451 -21.69849 -20.94613 -19.50327 -18.99821 -18.17416 -17.56418 -17.29223 -16.82363 -16.57205 -16.43376 -16.00499 -15.63367 -15.45890 -15.23280 -14.83016 -14.70760 -14.66039 -14.26534 -14.14760 -13.88444 -13.76360 -13.35426 -13.31154 -13.28834 -13.07402 -13.01018 -12.86104 -12.64811 -12.60225 -12.06410 -11.92070 -11.90155 -11.83971 -11.77934 -11.48696 -11.05573 -10.82480 -10.65039 -10.49281 -10.09934 -9.60853 -9.29791 -8.20472 -6.18059 0.68933 0.73570 0.76167 1.34584 1.38586 1.44753 1.85312 2.14216 2.43328 2.88641 3.09280 3.25161 3.65391 3.86710 3.90655 4.05189 4.13808 4.29325 4.31242 4.32082 4.36535 4.44422 4.45557 4.49325 4.64992 4.69953 4.72148 4.82977 4.85080 4.86986 4.93406 4.93980 5.00949 5.06919 5.19450 5.21067 5.30212 5.32670 5.38343 5.41140 5.46774 5.69346 5.77438 5.83205 6.03843 6.28626 6.33913 6.37539 6.60888 6.81227 7.43494 7.46581 8.96527 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003364 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.163341 B = 8320.776482 C = 9352.104306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.371 3.629 6 O -0.472 6.472 7 C 0.062 3.938 8 N -0.730 5.730 9 C 0.515 3.485 10 O -0.554 6.554 11 C -0.114 4.114 12 C 0.059 3.941 13 H 0.036 0.964 14 C -0.467 4.467 15 H 0.033 0.967 16 C 0.024 3.976 17 N -0.954 5.954 18 Si 0.920 3.080 19 H -0.287 1.287 20 H -0.224 1.224 21 H -0.297 1.297 22 C -0.064 4.064 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.125 4.125 27 C -0.151 4.151 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.411 0.589 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.258 0.742 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 9.141 2.186 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.198 4.198 4 C -0.200 4.200 5 C 0.247 3.753 6 O -0.346 6.346 7 C -0.062 4.062 8 N -0.386 5.386 9 C 0.302 3.698 10 O -0.430 6.430 11 C -0.154 4.154 12 C 0.039 3.961 13 H 0.054 0.946 14 C -0.505 4.505 15 H 0.051 0.949 16 C -0.172 4.172 17 N -0.595 5.595 18 Si 0.746 3.254 19 H -0.214 1.214 20 H -0.147 1.147 21 H -0.225 1.225 22 C -0.065 4.065 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.158 4.158 26 C -0.143 4.143 27 C -0.169 4.169 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.249 0.751 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.067 0.933 43 H 0.125 0.875 44 H 0.155 0.845 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.582 9.149 2.038 18.184 hybrid contribution 0.695 0.080 -0.279 0.753 sum -14.887 9.229 1.758 17.604 Atomic orbital electron populations 1.21722 0.91819 1.02319 1.02965 1.21169 0.98222 0.97816 0.93565 1.21910 1.01931 0.92082 1.03889 1.21919 1.01867 1.00271 0.95958 1.25038 0.89493 0.74519 0.86243 1.90356 1.58908 1.39669 1.45625 1.21791 0.96052 0.99687 0.88684 1.45817 1.08259 1.59737 1.24828 1.21010 0.81925 0.78940 0.87888 1.90723 1.42947 1.51757 1.57607 1.21606 0.98703 1.00941 0.94104 1.18002 0.92479 0.95608 0.89995 0.94599 1.20801 0.99594 1.11521 1.18556 0.94887 1.25616 0.98942 0.97948 0.94680 1.70034 1.17099 1.41783 1.30614 0.86154 0.77191 0.80423 0.81593 1.21378 1.14697 1.22451 1.20497 0.96164 0.94939 0.94882 1.21017 1.00966 0.94840 0.96937 1.21393 0.99576 1.00478 0.93030 1.21338 1.00030 0.94404 0.99990 1.21345 1.00167 0.96256 0.96491 1.21269 1.01505 1.00053 0.94036 0.92738 0.89612 0.93089 0.91481 0.89144 0.92185 0.92667 0.89025 0.91664 0.87494 0.88581 0.75108 0.88916 0.87793 0.93320 0.87474 0.84460 0.83601 0.84129 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 7.76 71.98 0.56 -1.37 16 2 C -0.11 -1.68 0.87 -52.93 -0.05 -1.73 16 3 C -0.14 -1.76 8.25 71.98 0.59 -1.17 16 4 C -0.14 -2.02 8.26 71.98 0.59 -1.42 16 5 C 0.37 8.27 6.04 29.10 0.18 8.45 16 6 O -0.47 -12.68 15.29 -1.45 -0.02 -12.71 16 7 C 0.06 1.64 5.43 85.63 0.46 2.11 16 8 N -0.73 -22.72 5.53 -466.79 -2.58 -25.30 16 9 C 0.51 20.59 7.58 87.66 0.66 21.25 16 10 O -0.55 -27.65 15.02 -3.04 -0.05 -27.70 16 11 C -0.11 -4.30 4.96 29.85 0.15 -4.15 16 12 C 0.06 2.69 1.17 -12.29 -0.01 2.68 16 13 H 0.04 1.74 4.94 -2.39 -0.01 1.73 16 14 C -0.47 -26.58 6.88 25.60 0.18 -26.40 16 15 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 16 C 0.02 1.48 5.47 84.65 0.46 1.94 16 17 N -0.95 -62.40 13.96 21.45 0.30 -62.10 16 18 Si 0.92 47.62 27.00 68.60 1.85 49.47 16 19 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 20 H -0.22 -10.33 4.72 99.48 0.47 -9.86 16 21 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 22 C -0.06 -2.65 4.65 -19.87 -0.09 -2.74 16 23 C -0.12 -4.60 8.93 22.27 0.20 -4.40 16 24 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 25 C -0.14 -3.95 10.05 22.27 0.22 -3.72 16 26 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 27 C -0.15 -5.55 8.70 22.27 0.19 -5.36 16 28 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.07 0.87 7.28 -2.39 -0.02 0.85 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.98 7.28 -2.39 -0.02 0.97 16 37 H 0.11 2.66 7.38 -2.39 -0.02 2.65 16 38 H 0.10 2.68 7.38 -2.39 -0.02 2.66 16 39 H 0.41 11.31 7.44 -92.70 -0.69 10.62 16 40 H 0.09 3.36 8.05 -2.38 -0.02 3.34 16 41 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.11 4.28 7.87 -2.91 -0.02 4.26 16 44 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 47 H 0.11 4.03 7.12 -2.91 -0.02 4.01 16 Total: -1.00 -77.75 381.17 4.28 -73.47 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.03 Total: 28.22 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.75 Total: -23.36 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -2.28 Total: -87.40 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.07 Total: -40.40 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.85 Total: 49.47 kcal Total: -77.75 4.28 -73.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356601824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.238 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds