Wall clock time and date at job start Tue Mar 31 2020 12:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00336 * 2 1 4 4 C 1.52998 * 109.47490 * 125.00090 * 3 2 1 5 5 H 1.09001 * 109.46899 * 305.00231 * 4 3 2 6 6 C 1.53007 * 109.47253 * 64.99620 * 4 3 2 7 7 O 1.42898 * 109.47198 * 185.00287 * 6 4 3 8 8 C 1.52995 * 109.47402 * 185.00076 * 4 3 2 9 9 N 1.46503 * 109.47110 * 174.99880 * 8 4 3 10 10 C 1.34777 * 119.99926 * 179.97438 * 9 8 4 11 11 O 1.21282 * 119.99737 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47010 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.47465 * 305.00010 * 13 12 10 15 15 C 1.50698 * 109.47080 * 65.00685 * 13 12 10 16 16 H 1.08002 * 120.00223 * 26.94016 * 15 13 12 17 17 C 1.37886 * 120.00006 * 206.93845 * 15 13 12 18 18 N 1.31507 * 120.00030 * 186.61954 * 17 15 13 19 19 Si 1.86801 * 119.99698 * 6.90022 * 17 15 13 20 20 H 1.48503 * 109.46742 * 274.25466 * 19 17 15 21 21 H 1.48504 * 109.47191 * 34.25328 * 19 17 15 22 22 H 1.48499 * 109.46928 * 154.25467 * 19 17 15 23 23 C 1.50706 * 109.46940 * 184.99987 * 13 12 10 24 24 C 1.38233 * 119.99857 * 297.92917 * 23 13 12 25 25 C 1.38240 * 119.99757 * 179.78388 * 24 23 13 26 26 C 1.38239 * 119.99979 * 0.44453 * 25 24 23 27 27 C 1.38242 * 120.00017 * 359.80708 * 26 25 24 28 28 C 1.38230 * 119.99928 * 118.19592 * 23 13 12 29 29 H 1.07991 * 120.00322 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99430 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99763 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47403 * 4.99747 * 3 2 1 33 33 H 1.09007 * 109.46858 * 245.00009 * 3 2 1 34 34 H 1.09000 * 109.46999 * 305.00695 * 6 4 3 35 35 H 1.09001 * 109.46551 * 65.00400 * 6 4 3 36 36 H 0.96696 * 114.00089 * 180.02562 * 7 6 4 37 37 H 1.08993 * 109.47235 * 54.99345 * 8 4 3 38 38 H 1.09008 * 109.46724 * 294.99514 * 8 4 3 39 39 H 0.96995 * 120.00090 * 0.02562 * 9 8 4 40 40 H 1.09000 * 109.46914 * 60.00574 * 12 10 9 41 41 H 1.09000 * 109.47087 * 300.00639 * 12 10 9 42 42 H 0.96994 * 119.99996 * 180.27656 * 18 17 15 43 43 H 1.07994 * 120.00554 * 359.97438 * 24 23 13 44 44 H 1.07996 * 120.00426 * 180.26872 * 25 24 23 45 45 H 1.08000 * 120.00114 * 179.82966 * 26 25 24 46 46 H 1.07993 * 120.00100 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.00162 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 4.0999 0.2507 0.9921 7 8 4.9374 0.1987 2.1488 8 6 3.7093 2.7045 1.2552 9 7 4.5486 2.7723 2.4540 10 6 5.2441 3.8940 2.7271 11 8 5.1749 4.8473 1.9805 12 6 6.1070 3.9641 3.9606 13 6 6.7813 5.3355 4.0340 14 1 7.3283 5.5215 3.1098 15 6 5.7325 6.4015 4.2202 16 1 4.7963 6.1599 4.7014 17 6 5.9682 7.6855 3.7763 18 7 5.1118 8.6445 4.0528 19 14 7.5000 8.0613 2.7754 20 1 8.6345 8.3392 3.6924 21 1 7.8303 6.8940 1.9188 22 1 7.2528 9.2493 1.9194 23 6 7.7378 5.3633 5.1983 24 6 7.2644 5.1943 6.4860 25 6 8.1424 5.2153 7.5535 26 6 9.4926 5.4145 7.3341 27 6 9.9654 5.5886 6.0468 28 6 9.0879 5.5632 4.9789 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1317 0.0895 33 1 2.6214 1.4025 -0.9315 34 1 3.6151 -0.7152 0.8508 35 1 4.7045 0.4854 0.1160 36 1 5.6371 -0.4667 2.0982 37 1 2.9470 3.4821 1.3008 38 1 4.3276 2.8533 0.3699 39 1 4.6042 2.0098 3.0509 40 1 6.8692 3.1861 3.9155 41 1 5.4884 3.8158 4.8457 42 1 5.2755 9.5468 3.7371 43 1 6.2090 5.0428 6.6578 44 1 7.7732 5.0790 8.5592 45 1 10.1782 5.4336 8.1683 46 1 11.0203 5.7438 5.8753 47 1 9.4573 5.6991 3.9732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356636099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:01 Heat of formation + Delta-G solvation = -54.409935 kcal Electronic energy + Delta-G solvation = -26393.013800 eV Core-core repulsion = 22733.734688 eV Total energy + Delta-G solvation = -3659.279112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.29226 -38.53556 -37.73506 -35.72229 -34.30164 -33.70010 -31.69482 -31.37851 -30.15892 -28.95827 -26.55256 -26.01639 -24.91142 -22.50618 -21.80258 -20.91830 -20.24105 -19.69602 -18.93485 -17.59395 -16.87774 -16.51334 -16.14813 -15.68477 -15.31743 -15.11094 -14.56959 -14.43803 -14.22646 -13.98494 -13.70081 -13.40952 -13.01925 -12.85424 -12.71772 -12.64420 -12.48713 -12.21810 -11.95094 -11.78836 -11.70852 -11.63098 -11.08264 -10.99413 -10.74778 -10.74532 -10.44757 -10.28790 -10.09515 -9.80907 -9.63880 -9.53674 -9.06205 -8.77464 -8.40826 -8.31403 -8.16072 -7.75833 -5.92180 -3.87061 1.99042 2.14347 2.20293 3.45911 3.50898 3.55864 3.65129 3.73128 4.07898 4.52415 4.57857 4.62622 4.66131 4.88835 5.00335 5.04831 5.28590 5.31798 5.37790 5.45095 5.56005 5.58464 5.60899 5.64869 5.72689 5.74473 5.86337 6.03663 6.05295 6.09422 6.17721 6.19883 6.29730 6.33761 6.40030 6.48216 6.68971 6.76359 6.88859 7.10800 7.16490 7.19206 7.32489 7.43370 7.66397 7.78066 7.89058 8.34786 8.60781 9.07677 9.21587 9.72687 11.21212 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003348 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.007077 B = 8360.040894 C = 9454.039385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C -0.086 4.086 4 C -0.096 4.096 5 H 0.085 0.915 6 C 0.082 3.918 7 O -0.569 6.569 8 C 0.130 3.870 9 N -0.736 5.736 10 C 0.511 3.489 11 O -0.511 6.511 12 C -0.113 4.113 13 C 0.048 3.952 14 H 0.053 0.947 15 C -0.479 4.479 16 H 0.071 0.929 17 C 0.083 3.917 18 N -0.901 5.901 19 Si 0.867 3.133 20 H -0.275 1.275 21 H -0.261 1.261 22 H -0.292 1.292 23 C -0.038 4.038 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.125 4.125 28 C -0.139 4.139 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.403 0.597 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.261 0.739 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -19.963 -3.992 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.124 4.124 4 C -0.115 4.115 5 H 0.104 0.896 6 C 0.004 3.996 7 O -0.375 6.375 8 C 0.006 3.994 9 N -0.394 5.394 10 C 0.297 3.703 11 O -0.383 6.383 12 C -0.153 4.153 13 C 0.029 3.971 14 H 0.071 0.929 15 C -0.516 4.516 16 H 0.089 0.911 17 C -0.119 4.119 18 N -0.539 5.539 19 Si 0.696 3.304 20 H -0.201 1.201 21 H -0.186 1.186 22 H -0.219 1.219 23 C -0.039 4.039 24 C -0.119 4.119 25 C -0.145 4.145 26 C -0.168 4.168 27 C -0.143 4.143 28 C -0.157 4.157 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.227 0.773 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.240 0.760 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.622 -18.555 -4.382 19.135 hybrid contribution 1.095 -0.401 -0.469 1.257 sum -0.527 -18.957 -4.851 19.574 Atomic orbital electron populations 1.23893 0.95988 1.01959 1.01070 1.22953 0.96048 0.98324 0.99984 1.20685 0.97795 0.96003 0.97938 1.21394 0.95447 0.94723 0.99905 0.89639 1.22278 0.91698 0.97709 0.87898 1.86329 1.47505 1.62400 1.41290 1.21133 0.94005 0.95055 0.89224 1.46165 1.48945 1.17529 1.26783 1.20787 0.80146 0.81619 0.87714 1.90721 1.62928 1.35315 1.49383 1.21573 0.98126 0.99958 0.95686 1.18242 0.93951 0.92683 0.92251 0.92929 1.20607 1.00612 0.92207 1.38179 0.91094 1.24861 0.95928 0.96096 0.95004 1.69890 1.36775 1.01239 1.46002 0.86956 0.84271 0.77840 0.81364 1.20094 1.18597 1.21889 1.20796 0.93401 0.92851 0.96824 1.20959 0.99361 0.99556 0.91997 1.21055 0.93607 1.01377 0.98422 1.20850 0.95597 1.04093 0.96307 1.20947 0.98746 1.01460 0.93126 1.21056 0.93641 1.02750 0.98301 0.88587 0.88391 0.87425 0.90249 0.90418 0.93592 0.93536 0.77303 0.91871 0.92382 0.75974 0.91419 0.89986 0.92923 0.86222 0.87181 0.87434 0.87391 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 14.32 29.01 0.42 -0.99 16 2 C -0.16 -1.16 9.03 -36.03 -0.33 -1.49 16 3 C -0.09 -0.72 5.13 -27.89 -0.14 -0.86 16 4 C -0.10 -0.95 2.28 -90.62 -0.21 -1.16 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.08 0.68 6.32 37.16 0.23 0.92 16 7 O -0.57 -5.10 10.88 -35.23 -0.38 -5.48 16 8 C 0.13 1.83 5.06 -4.04 -0.02 1.81 16 9 N -0.74 -11.75 5.01 -60.29 -0.30 -12.05 16 10 C 0.51 10.58 7.58 -10.99 -0.08 10.49 16 11 O -0.51 -13.08 14.98 5.56 0.08 -13.00 16 12 C -0.11 -2.23 4.93 -27.88 -0.14 -2.37 16 13 C 0.05 1.14 1.21 -92.92 -0.11 1.03 16 14 H 0.05 1.35 4.88 -51.93 -0.25 1.09 16 15 C -0.48 -13.60 6.97 -34.44 -0.24 -13.84 16 16 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 17 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 18 N -0.90 -28.75 13.96 55.43 0.77 -27.98 16 19 Si 0.87 23.30 26.62 -169.99 -4.52 18.77 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.87 6.29 56.52 0.36 -6.51 16 22 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 23 C -0.04 -0.83 4.52 -104.62 -0.47 -1.30 16 24 C -0.10 -2.03 8.86 -39.58 -0.35 -2.38 16 25 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 26 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 27 C -0.12 -2.22 10.05 -39.58 -0.40 -2.62 16 28 C -0.14 -2.84 9.08 -39.58 -0.36 -3.20 16 29 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 30 H 0.10 0.71 7.84 -52.48 -0.41 0.30 16 31 H 0.11 0.69 6.86 -52.49 -0.36 0.33 16 32 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.05 0.31 6.54 -51.93 -0.34 -0.03 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.38 1.87 9.12 45.56 0.42 2.29 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.40 5.62 6.29 -40.82 -0.26 5.36 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 42 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 43 H 0.12 2.38 7.72 -52.49 -0.40 1.97 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.11 2.14 7.91 -52.49 -0.42 1.73 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -35.76 382.93 -8.34 -44.10 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.66 Total: 8.98 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.09 Total: -19.12 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.47 Total: -40.03 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.30 Total: -18.47 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.52 Total: 18.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.76 -8.34 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.312 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds