Wall clock time and date at job start Tue Mar 31 2020 12:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00336 * 2 1 4 4 C 1.52998 * 109.47490 * 125.00090 * 3 2 1 5 5 H 1.09001 * 109.46899 * 305.00231 * 4 3 2 6 6 C 1.53007 * 109.47253 * 64.99620 * 4 3 2 7 7 O 1.42898 * 109.47198 * 185.00287 * 6 4 3 8 8 C 1.52995 * 109.47402 * 185.00076 * 4 3 2 9 9 N 1.46503 * 109.47110 * 174.99880 * 8 4 3 10 10 C 1.34777 * 119.99926 * 179.97438 * 9 8 4 11 11 O 1.21282 * 119.99737 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47010 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.47465 * 305.00010 * 13 12 10 15 15 C 1.50698 * 109.47080 * 65.00685 * 13 12 10 16 16 H 1.08002 * 120.00223 * 26.94016 * 15 13 12 17 17 C 1.37886 * 120.00006 * 206.93845 * 15 13 12 18 18 N 1.31507 * 120.00030 * 186.61954 * 17 15 13 19 19 Si 1.86801 * 119.99698 * 6.90022 * 17 15 13 20 20 H 1.48503 * 109.46742 * 274.25466 * 19 17 15 21 21 H 1.48504 * 109.47191 * 34.25328 * 19 17 15 22 22 H 1.48499 * 109.46928 * 154.25467 * 19 17 15 23 23 C 1.50706 * 109.46940 * 184.99987 * 13 12 10 24 24 C 1.38233 * 119.99857 * 297.92917 * 23 13 12 25 25 C 1.38240 * 119.99757 * 179.78388 * 24 23 13 26 26 C 1.38239 * 119.99979 * 0.44453 * 25 24 23 27 27 C 1.38242 * 120.00017 * 359.80708 * 26 25 24 28 28 C 1.38230 * 119.99928 * 118.19592 * 23 13 12 29 29 H 1.07991 * 120.00322 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99430 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99763 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47403 * 4.99747 * 3 2 1 33 33 H 1.09007 * 109.46858 * 245.00009 * 3 2 1 34 34 H 1.09000 * 109.46999 * 305.00695 * 6 4 3 35 35 H 1.09001 * 109.46551 * 65.00400 * 6 4 3 36 36 H 0.96696 * 114.00089 * 180.02562 * 7 6 4 37 37 H 1.08993 * 109.47235 * 54.99345 * 8 4 3 38 38 H 1.09008 * 109.46724 * 294.99514 * 8 4 3 39 39 H 0.96995 * 120.00090 * 0.02562 * 9 8 4 40 40 H 1.09000 * 109.46914 * 60.00574 * 12 10 9 41 41 H 1.09000 * 109.47087 * 300.00639 * 12 10 9 42 42 H 0.96994 * 119.99996 * 180.27656 * 18 17 15 43 43 H 1.07994 * 120.00554 * 359.97438 * 24 23 13 44 44 H 1.07996 * 120.00426 * 180.26872 * 25 24 23 45 45 H 1.08000 * 120.00114 * 179.82966 * 26 25 24 46 46 H 1.07993 * 120.00100 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.00162 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 4.0999 0.2507 0.9921 7 8 4.9374 0.1987 2.1488 8 6 3.7093 2.7045 1.2552 9 7 4.5486 2.7723 2.4540 10 6 5.2441 3.8940 2.7271 11 8 5.1749 4.8473 1.9805 12 6 6.1070 3.9641 3.9606 13 6 6.7813 5.3355 4.0340 14 1 7.3283 5.5215 3.1098 15 6 5.7325 6.4015 4.2202 16 1 4.7963 6.1599 4.7014 17 6 5.9682 7.6855 3.7763 18 7 5.1118 8.6445 4.0528 19 14 7.5000 8.0613 2.7754 20 1 8.6345 8.3392 3.6924 21 1 7.8303 6.8940 1.9188 22 1 7.2528 9.2493 1.9194 23 6 7.7378 5.3633 5.1983 24 6 7.2644 5.1943 6.4860 25 6 8.1424 5.2153 7.5535 26 6 9.4926 5.4145 7.3341 27 6 9.9654 5.5886 6.0468 28 6 9.0879 5.5632 4.9789 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1317 0.0895 33 1 2.6214 1.4025 -0.9315 34 1 3.6151 -0.7152 0.8508 35 1 4.7045 0.4854 0.1160 36 1 5.6371 -0.4667 2.0982 37 1 2.9470 3.4821 1.3008 38 1 4.3276 2.8533 0.3699 39 1 4.6042 2.0098 3.0509 40 1 6.8692 3.1861 3.9155 41 1 5.4884 3.8158 4.8457 42 1 5.2755 9.5468 3.7371 43 1 6.2090 5.0428 6.6578 44 1 7.7732 5.0790 8.5592 45 1 10.1782 5.4336 8.1683 46 1 11.0203 5.7438 5.8753 47 1 9.4573 5.6991 3.9732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356636099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:00 Heat of formation + Delta-G solvation = -79.391377 kcal Electronic energy + Delta-G solvation = -26394.097077 eV Core-core repulsion = 22733.734688 eV Total energy + Delta-G solvation = -3660.362389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79828 -39.89836 -38.83625 -36.41156 -35.92057 -35.13814 -33.72913 -32.44646 -31.60539 -30.43260 -28.21629 -26.68685 -26.38867 -24.17726 -23.27025 -21.83416 -21.68798 -20.75550 -20.26310 -19.02883 -18.33697 -17.93503 -17.31979 -16.96355 -16.70157 -16.27174 -16.05245 -15.82320 -15.45812 -15.36851 -15.08989 -14.77709 -14.37373 -14.20003 -14.07052 -13.94666 -13.85143 -13.61752 -13.43668 -13.25595 -12.86331 -12.75472 -12.66293 -12.49732 -12.09026 -11.89646 -11.80991 -11.74998 -11.55209 -11.47574 -11.04017 -10.78213 -10.69712 -10.50683 -10.19336 -9.81188 -9.62502 -9.30446 -8.23152 -6.18108 0.67819 0.73355 1.27870 1.32544 1.41183 1.41321 1.99053 2.38998 2.47312 3.07484 3.21724 3.34827 3.69561 3.89441 4.12690 4.21063 4.26270 4.28483 4.31444 4.32519 4.33261 4.44563 4.50444 4.53922 4.61670 4.65104 4.68425 4.77298 4.84644 4.87385 4.89507 5.00847 5.10858 5.14826 5.22651 5.25492 5.39403 5.40442 5.68903 5.73796 5.76228 5.79432 5.82062 5.91052 6.03148 6.33796 6.35688 6.79779 6.84455 7.05460 7.43655 7.65113 8.94449 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003348 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.007077 B = 8360.040894 C = 9454.039385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.085 4.085 5 H 0.081 0.919 6 C 0.084 3.916 7 O -0.589 6.589 8 C 0.126 3.874 9 N -0.714 5.714 10 C 0.505 3.495 11 O -0.570 6.570 12 C -0.109 4.109 13 C 0.051 3.949 14 H 0.033 0.967 15 C -0.460 4.460 16 H 0.032 0.968 17 C 0.021 3.979 18 N -0.953 5.953 19 Si 0.920 3.080 20 H -0.259 1.259 21 H -0.258 1.258 22 H -0.297 1.297 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.123 4.123 28 C -0.157 4.157 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.398 0.602 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.416 0.584 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.259 0.741 43 H 0.110 0.890 44 H 0.141 0.859 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -22.810 -2.924 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C -0.122 4.122 4 C -0.104 4.104 5 H 0.099 0.901 6 C 0.007 3.993 7 O -0.398 6.398 8 C 0.002 3.998 9 N -0.371 5.371 10 C 0.292 3.708 11 O -0.448 6.448 12 C -0.149 4.149 13 C 0.032 3.968 14 H 0.051 0.949 15 C -0.498 4.498 16 H 0.051 0.949 17 C -0.175 4.175 18 N -0.595 5.595 19 Si 0.747 3.253 20 H -0.184 1.184 21 H -0.182 1.182 22 H -0.224 1.224 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.158 4.158 27 C -0.141 4.141 28 C -0.176 4.176 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.249 0.751 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.256 0.744 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.623 -21.494 -3.295 21.755 hybrid contribution 0.378 0.340 -0.705 0.869 sum 1.002 -21.154 -4.000 21.552 Atomic orbital electron populations 1.24052 0.96170 1.02479 1.00629 1.22988 0.96097 0.98183 1.00309 1.20649 0.97442 0.96594 0.97511 1.21309 0.95987 0.92585 1.00474 0.90057 1.22264 0.91310 0.98027 0.87744 1.86244 1.48394 1.63570 1.41594 1.21283 0.93192 0.97318 0.87994 1.46009 1.47420 1.16461 1.27229 1.21057 0.80371 0.81903 0.87472 1.90696 1.65196 1.37601 1.51344 1.21518 0.98861 0.98895 0.95609 1.18083 0.93131 0.93116 0.92475 0.94907 1.20818 1.00245 0.93155 1.35551 0.94924 1.25585 0.98818 0.96380 0.96683 1.70030 1.39188 1.01628 1.48686 0.86111 0.81660 0.77304 0.80239 1.18364 1.18245 1.22387 1.20511 0.93821 0.95749 0.96318 1.21015 0.99574 1.00742 0.92395 1.21413 0.93837 0.99883 0.99005 1.21347 0.95772 1.01455 0.97183 1.21337 1.00027 1.00012 0.92740 1.21192 0.93488 1.03502 0.99368 0.87194 0.88899 0.85732 0.91236 0.89734 0.91008 0.93334 0.75128 0.94122 0.92993 0.74410 0.87939 0.89042 0.93230 0.87209 0.84132 0.83395 0.84138 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 14.32 67.78 0.97 -1.62 16 2 C -0.16 -2.07 9.03 25.65 0.23 -1.84 16 3 C -0.08 -1.34 5.13 29.85 0.15 -1.19 16 4 C -0.08 -1.61 2.28 -10.79 -0.02 -1.63 16 5 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 6 C 0.08 1.21 6.32 71.98 0.45 1.67 16 7 O -0.59 -9.17 10.88 -148.98 -1.62 -10.80 16 8 C 0.13 3.63 5.06 86.38 0.44 4.07 16 9 N -0.71 -22.92 5.01 -463.06 -2.32 -25.24 16 10 C 0.50 21.44 7.58 87.66 0.66 22.10 16 11 O -0.57 -30.63 14.98 -3.03 -0.05 -30.68 16 12 C -0.11 -4.31 4.93 29.85 0.15 -4.16 16 13 C 0.05 2.48 1.21 -12.29 -0.01 2.46 16 14 H 0.03 1.71 4.88 -2.39 -0.01 1.70 16 15 C -0.46 -27.28 6.97 25.60 0.18 -27.10 16 16 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 17 C 0.02 1.34 5.47 84.66 0.46 1.80 16 18 N -0.95 -63.85 13.96 21.45 0.30 -63.55 16 19 Si 0.92 49.63 26.62 68.60 1.83 51.45 16 20 H -0.26 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.26 -13.58 6.29 99.48 0.63 -12.96 16 22 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 23 C -0.06 -2.72 4.52 -19.87 -0.09 -2.81 16 24 C -0.12 -4.68 8.86 22.27 0.20 -4.48 16 25 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 26 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 27 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 28 C -0.16 -6.13 9.08 22.27 0.20 -5.93 16 29 H 0.11 1.13 8.06 -2.92 -0.02 1.11 16 30 H 0.09 1.29 7.84 -2.91 -0.02 1.27 16 31 H 0.12 1.21 6.86 -2.91 -0.02 1.19 16 32 H 0.07 1.23 7.79 -2.38 -0.02 1.21 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 0.71 6.54 -2.39 -0.02 0.69 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.40 2.84 9.12 -74.06 -0.68 2.17 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.42 11.20 6.29 -92.71 -0.58 10.61 16 40 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.09 3.42 7.69 -2.39 -0.02 3.40 16 42 H 0.26 16.48 8.31 -92.71 -0.77 15.71 16 43 H 0.11 4.41 7.72 -2.91 -0.02 4.38 16 44 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 47 H 0.11 4.06 7.91 -2.91 -0.02 4.04 16 Total: -1.00 -82.31 382.93 2.41 -79.91 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.38 Total: 28.79 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.64 Total: -29.89 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.02 Total: -88.79 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.67 Total: -41.47 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.83 Total: 51.45 kcal Total: -82.31 2.41 -79.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.516 kcal (2) G-P(sol) polarization free energy of solvation -82.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds