Wall clock time and date at job start Tue Mar 31 2020 12:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50700 * 120.00195 * 2 1 4 4 C 1.53001 * 109.47010 * 125.00074 * 3 2 1 5 5 H 1.08999 * 109.47072 * 55.00269 * 4 3 2 6 6 C 1.52996 * 109.46972 * 294.99805 * 4 3 2 7 7 O 1.42902 * 109.47273 * 65.00528 * 6 4 3 8 8 C 1.53003 * 109.46830 * 174.99927 * 4 3 2 9 9 N 1.46499 * 109.46917 * 184.99965 * 8 4 3 10 10 C 1.34775 * 120.00131 * 180.02562 * 9 8 4 11 11 O 1.21286 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.00519 * 180.02562 * 10 9 8 13 13 C 1.52995 * 109.47414 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47270 * 54.99397 * 13 12 10 15 15 C 1.50706 * 109.46989 * 294.99862 * 13 12 10 16 16 H 1.08001 * 120.00034 * 325.85370 * 15 13 12 17 17 C 1.37876 * 119.99504 * 145.85175 * 15 13 12 18 18 N 1.31507 * 120.00600 * 6.11592 * 17 15 13 19 19 Si 1.86811 * 119.99469 * 186.11742 * 17 15 13 20 20 H 1.48492 * 109.46951 * 90.00093 * 19 17 15 21 21 H 1.48495 * 109.46877 * 209.99954 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99822 * 19 17 15 23 23 C 1.50694 * 109.47324 * 175.00073 * 13 12 10 24 24 C 1.38233 * 120.00302 * 63.45282 * 23 13 12 25 25 C 1.38237 * 120.00391 * 179.81337 * 24 23 13 26 26 C 1.38235 * 119.99662 * 0.39851 * 25 24 23 27 27 C 1.38238 * 119.99925 * 359.85606 * 26 25 24 28 28 C 1.38233 * 120.00038 * 359.95674 * 27 26 25 29 29 H 1.08002 * 120.00092 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00300 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99671 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47209 * 4.99789 * 3 2 1 33 33 H 1.08998 * 109.47194 * 244.99887 * 3 2 1 34 34 H 1.08994 * 109.47293 * 304.99905 * 6 4 3 35 35 H 1.09008 * 109.47135 * 185.00196 * 6 4 3 36 36 H 0.96701 * 114.00200 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47108 * 304.99759 * 8 4 3 38 38 H 1.09000 * 109.47217 * 64.99855 * 8 4 3 39 39 H 0.96999 * 120.00077 * 359.97438 * 9 8 4 40 40 H 1.09005 * 109.46694 * 299.99889 * 12 10 9 41 41 H 1.09000 * 109.47098 * 59.99492 * 12 10 9 42 42 H 0.97001 * 120.00358 * 179.97438 * 18 17 15 43 43 H 1.08002 * 120.00050 * 0.02562 * 24 23 13 44 44 H 1.07998 * 120.00374 * 180.23322 * 25 24 23 45 45 H 1.07996 * 120.00072 * 179.83650 * 26 25 24 46 46 H 1.08008 * 119.99743 * 179.97438 * 27 26 25 47 47 H 1.07999 * 119.99844 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 3.6826 0.4572 1.1403 6 6 2.2450 1.3218 2.4918 7 8 1.5392 0.0850 2.6119 8 6 3.8876 2.6015 1.1110 9 7 4.8972 2.5710 2.1721 10 6 5.7667 3.5922 2.3045 11 8 5.7137 4.5362 1.5448 12 6 6.8057 3.5606 3.3956 13 6 7.6582 4.8291 3.3251 14 1 7.0106 5.7049 3.3667 15 6 8.4359 4.8405 2.0342 16 1 8.7936 3.9135 1.6111 17 6 8.6907 6.0345 1.3936 18 7 8.3617 7.1716 1.9665 19 14 9.5033 6.0369 -0.2886 20 1 8.4591 5.9798 -1.3428 21 1 10.3027 7.2779 -0.4503 22 1 10.3942 4.8549 -0.4096 23 6 8.6155 4.8564 4.4885 24 6 9.5867 3.8799 4.6076 25 6 10.4674 3.9071 5.6728 26 6 10.3716 4.9062 6.6234 27 6 9.3970 5.8797 6.5071 28 6 8.5189 5.8546 5.4399 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 1.5338 2.1477 2.4943 35 1 2.9318 1.4312 3.3312 36 1 1.0150 0.0083 3.4209 37 1 4.3816 2.6536 0.1408 38 1 3.2497 3.4757 1.2413 39 1 4.9394 1.8162 2.7798 40 1 6.3120 3.5077 4.3660 41 1 7.4438 2.6867 3.2646 42 1 8.5414 8.0116 1.5159 43 1 9.6596 3.0976 3.8666 44 1 11.2285 3.1464 5.7638 45 1 11.0579 4.9260 7.4570 46 1 9.3219 6.6600 7.2501 47 1 7.7572 6.6150 5.3493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356636101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:11 Heat of formation + Delta-G solvation = -56.574732 kcal Electronic energy + Delta-G solvation = -26155.110313 eV Core-core repulsion = 22495.737328 eV Total energy + Delta-G solvation = -3659.372985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.29559 -38.38470 -37.78174 -35.42709 -34.30865 -33.77643 -31.61755 -31.19488 -29.99396 -28.83041 -26.33659 -26.06647 -24.77352 -22.65949 -21.60886 -20.59993 -20.29432 -19.76789 -19.16967 -17.52491 -16.57450 -16.22372 -15.90875 -15.69795 -15.60302 -14.79333 -14.69832 -14.43781 -14.15170 -13.95571 -13.78017 -13.43044 -12.89473 -12.86459 -12.69048 -12.46089 -12.22938 -11.95015 -11.74457 -11.63370 -11.58027 -11.47544 -10.96913 -10.90724 -10.83556 -10.66686 -10.54656 -10.24489 -10.22293 -10.04305 -9.43048 -9.18876 -9.05127 -8.84812 -8.55200 -8.30978 -8.03155 -7.59118 -5.91553 -3.90934 2.30187 2.33005 2.36295 3.40038 3.45563 3.47305 3.57038 3.71357 4.01713 4.53899 4.63595 4.69119 4.76798 4.93953 5.15041 5.23725 5.34611 5.43110 5.47719 5.54245 5.56946 5.67271 5.71635 5.74272 5.82570 5.85699 5.88365 6.01173 6.11026 6.16063 6.22014 6.30456 6.42656 6.55283 6.61400 6.79473 6.82260 6.91971 6.92798 7.06337 7.32366 7.44887 7.46177 7.54540 7.87556 7.96697 8.05637 8.11431 8.40619 9.08309 9.11398 9.71135 11.18689 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.003221 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.109113 B = 8692.111137 C =10229.808598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.093 4.093 5 H 0.084 0.916 6 C 0.081 3.919 7 O -0.564 6.564 8 C 0.128 3.872 9 N -0.753 5.753 10 C 0.511 3.489 11 O -0.494 6.494 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.072 0.928 15 C -0.492 4.492 16 H 0.050 0.950 17 C 0.079 3.921 18 N -0.881 5.881 19 Si 0.886 3.114 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.021 4.021 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.373 0.627 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.392 0.608 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.259 0.741 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -12.601 4.211 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.135 4.135 3 C -0.124 4.124 4 C -0.112 4.112 5 H 0.103 0.897 6 C 0.003 3.997 7 O -0.369 6.369 8 C 0.004 3.996 9 N -0.409 5.409 10 C 0.298 3.702 11 O -0.365 6.365 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.530 4.530 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.220 0.780 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.225 0.775 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.874 -11.750 3.015 16.291 hybrid contribution 0.375 -0.122 -0.110 0.410 sum -10.499 -11.872 2.906 16.112 Atomic orbital electron populations 1.23571 0.95883 1.00971 1.03574 1.22622 0.95778 0.97698 0.97386 1.20720 0.97816 0.96123 0.97746 1.21386 0.96581 0.98925 0.94342 0.89729 1.22201 0.94443 0.86074 0.96989 1.86554 1.66476 1.37937 1.45938 1.21177 0.89881 0.96270 0.92311 1.46267 1.35375 1.24232 1.35041 1.20915 0.81286 0.81639 0.86375 1.90766 1.69559 1.33145 1.43068 1.21798 0.96366 1.03058 0.95078 1.17827 0.92008 0.92961 0.91080 0.91028 1.20683 1.34842 0.92621 1.04816 0.93172 1.24799 0.94970 0.95697 0.96946 1.69907 1.47142 0.97205 1.37592 0.86705 0.79139 0.77196 0.85542 1.20654 1.21522 1.20128 1.20744 0.96447 0.91785 0.93164 1.20948 0.95698 0.99748 0.96975 1.20973 0.99396 0.98781 0.95841 1.20791 0.99910 0.96917 0.99797 1.20983 0.96583 0.98496 0.98565 1.21086 0.99662 0.98947 0.94025 0.89324 0.89168 0.87853 0.91374 0.90607 0.93665 0.93485 0.78041 0.91203 0.91826 0.77512 0.91747 0.90554 0.93158 0.86918 0.87691 0.87832 0.87665 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.08 29.02 0.41 -1.42 16 2 C -0.12 -1.12 7.31 -36.02 -0.26 -1.38 16 3 C -0.09 -0.83 5.13 -27.88 -0.14 -0.97 16 4 C -0.09 -0.93 2.26 -90.62 -0.20 -1.14 16 5 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 6 C 0.08 0.73 6.34 37.16 0.24 0.96 16 7 O -0.56 -4.83 11.22 -35.23 -0.40 -5.22 16 8 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 9 N -0.75 -10.74 5.23 -60.29 -0.32 -11.06 16 10 C 0.51 9.98 7.58 -10.98 -0.08 9.90 16 11 O -0.49 -12.25 14.98 5.55 0.08 -12.16 16 12 C -0.12 -2.33 4.95 -27.88 -0.14 -2.47 16 13 C 0.08 1.91 1.67 -92.93 -0.16 1.75 16 14 H 0.07 1.96 6.98 -51.93 -0.36 1.60 16 15 C -0.49 -13.22 6.37 -34.44 -0.22 -13.44 16 16 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 17 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 18 N -0.88 -25.97 12.87 55.43 0.71 -25.25 16 19 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.02 -0.46 4.77 -104.63 -0.50 -0.96 16 24 C -0.12 -2.33 8.86 -39.58 -0.35 -2.68 16 25 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 26 C -0.16 -2.72 10.05 -39.58 -0.40 -3.11 16 27 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 28 C -0.12 -2.51 9.67 -39.58 -0.38 -2.90 16 29 H 0.09 0.77 7.84 -52.49 -0.41 0.36 16 30 H 0.09 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.10 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.41 7.07 -51.92 -0.37 0.04 16 36 H 0.37 1.82 9.12 45.56 0.42 2.24 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.39 4.42 7.65 -40.82 -0.31 4.11 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.34 7.77 -51.93 -0.40 0.94 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.11 2.19 7.76 -52.49 -0.41 1.79 16 44 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 47 H 0.11 2.41 7.95 -52.49 -0.42 2.00 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -33.05 390.01 -9.03 -42.08 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.87 Total: 8.03 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.11 Total: -19.62 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.40 Total: -36.31 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.31 Total: -17.38 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.05 -9.03 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.494 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds