Wall clock time and date at job start Tue Mar 31 2020 12:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50700 * 120.00195 * 2 1 4 4 C 1.53001 * 109.47010 * 125.00074 * 3 2 1 5 5 H 1.08999 * 109.47072 * 55.00269 * 4 3 2 6 6 C 1.52996 * 109.46972 * 294.99805 * 4 3 2 7 7 O 1.42902 * 109.47273 * 65.00528 * 6 4 3 8 8 C 1.53003 * 109.46830 * 174.99927 * 4 3 2 9 9 N 1.46499 * 109.46917 * 184.99965 * 8 4 3 10 10 C 1.34775 * 120.00131 * 180.02562 * 9 8 4 11 11 O 1.21286 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.00519 * 180.02562 * 10 9 8 13 13 C 1.52995 * 109.47414 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47270 * 54.99397 * 13 12 10 15 15 C 1.50706 * 109.46989 * 294.99862 * 13 12 10 16 16 H 1.08001 * 120.00034 * 325.85370 * 15 13 12 17 17 C 1.37876 * 119.99504 * 145.85175 * 15 13 12 18 18 N 1.31507 * 120.00600 * 6.11592 * 17 15 13 19 19 Si 1.86811 * 119.99469 * 186.11742 * 17 15 13 20 20 H 1.48492 * 109.46951 * 90.00093 * 19 17 15 21 21 H 1.48495 * 109.46877 * 209.99954 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99822 * 19 17 15 23 23 C 1.50694 * 109.47324 * 175.00073 * 13 12 10 24 24 C 1.38233 * 120.00302 * 63.45282 * 23 13 12 25 25 C 1.38237 * 120.00391 * 179.81337 * 24 23 13 26 26 C 1.38235 * 119.99662 * 0.39851 * 25 24 23 27 27 C 1.38238 * 119.99925 * 359.85606 * 26 25 24 28 28 C 1.38233 * 120.00038 * 359.95674 * 27 26 25 29 29 H 1.08002 * 120.00092 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00300 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99671 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47209 * 4.99789 * 3 2 1 33 33 H 1.08998 * 109.47194 * 244.99887 * 3 2 1 34 34 H 1.08994 * 109.47293 * 304.99905 * 6 4 3 35 35 H 1.09008 * 109.47135 * 185.00196 * 6 4 3 36 36 H 0.96701 * 114.00200 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47108 * 304.99759 * 8 4 3 38 38 H 1.09000 * 109.47217 * 64.99855 * 8 4 3 39 39 H 0.96999 * 120.00077 * 359.97438 * 9 8 4 40 40 H 1.09005 * 109.46694 * 299.99889 * 12 10 9 41 41 H 1.09000 * 109.47098 * 59.99492 * 12 10 9 42 42 H 0.97001 * 120.00358 * 179.97438 * 18 17 15 43 43 H 1.08002 * 120.00050 * 0.02562 * 24 23 13 44 44 H 1.07998 * 120.00374 * 180.23322 * 25 24 23 45 45 H 1.07996 * 120.00072 * 179.83650 * 26 25 24 46 46 H 1.08008 * 119.99743 * 179.97438 * 27 26 25 47 47 H 1.07999 * 119.99844 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 3.6826 0.4572 1.1403 6 6 2.2450 1.3218 2.4918 7 8 1.5392 0.0850 2.6119 8 6 3.8876 2.6015 1.1110 9 7 4.8972 2.5710 2.1721 10 6 5.7667 3.5922 2.3045 11 8 5.7137 4.5362 1.5448 12 6 6.8057 3.5606 3.3956 13 6 7.6582 4.8291 3.3251 14 1 7.0106 5.7049 3.3667 15 6 8.4359 4.8405 2.0342 16 1 8.7936 3.9135 1.6111 17 6 8.6907 6.0345 1.3936 18 7 8.3617 7.1716 1.9665 19 14 9.5033 6.0369 -0.2886 20 1 8.4591 5.9798 -1.3428 21 1 10.3027 7.2779 -0.4503 22 1 10.3942 4.8549 -0.4096 23 6 8.6155 4.8564 4.4885 24 6 9.5867 3.8799 4.6076 25 6 10.4674 3.9071 5.6728 26 6 10.3716 4.9062 6.6234 27 6 9.3970 5.8797 6.5071 28 6 8.5189 5.8546 5.4399 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 1.5338 2.1477 2.4943 35 1 2.9318 1.4312 3.3312 36 1 1.0150 0.0083 3.4209 37 1 4.3816 2.6536 0.1408 38 1 3.2497 3.4757 1.2413 39 1 4.9394 1.8162 2.7798 40 1 6.3120 3.5077 4.3660 41 1 7.4438 2.6867 3.2646 42 1 8.5414 8.0116 1.5159 43 1 9.6596 3.0976 3.8666 44 1 11.2285 3.1464 5.7638 45 1 11.0579 4.9260 7.4570 46 1 9.3219 6.6600 7.2501 47 1 7.7572 6.6150 5.3493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356636101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:10 Heat of formation + Delta-G solvation = -78.042838 kcal Electronic energy + Delta-G solvation = -26156.041240 eV Core-core repulsion = 22495.737328 eV Total energy + Delta-G solvation = -3660.303911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74168 -39.77479 -38.84621 -36.32251 -35.75774 -35.17230 -33.42912 -32.37102 -31.48425 -30.30000 -27.83928 -26.92647 -26.24525 -24.27919 -23.11700 -21.71133 -21.53733 -20.80634 -20.53074 -18.52289 -18.30377 -17.73942 -17.07899 -16.90538 -16.73012 -16.37928 -15.99481 -15.68511 -15.63938 -15.37659 -14.98020 -14.62359 -14.24365 -14.17560 -13.94717 -13.73793 -13.60618 -13.48989 -13.25659 -13.15614 -12.84475 -12.55811 -12.51165 -12.42447 -12.32029 -11.81511 -11.76543 -11.72726 -11.63800 -11.29739 -10.94290 -10.90457 -10.63348 -10.33900 -9.92647 -9.87108 -9.52686 -9.17351 -8.03314 -6.05482 0.79402 0.85761 1.35601 1.40509 1.44793 1.60239 2.00863 2.43057 2.46976 3.20145 3.29064 3.37610 3.80006 3.88109 4.19529 4.21197 4.27229 4.36999 4.38626 4.42862 4.49303 4.55109 4.57503 4.60602 4.67886 4.72220 4.76844 4.80420 4.88930 4.95017 5.01541 5.04984 5.14008 5.26850 5.31020 5.39474 5.54536 5.63246 5.66686 5.80232 5.85357 5.89766 5.97211 6.07144 6.19178 6.43495 6.48366 6.79724 6.97160 7.02703 7.57328 7.63045 9.06431 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.003221 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.109113 B = 8692.111137 C =10229.808598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.086 4.086 4 C -0.082 4.082 5 H 0.088 0.912 6 C 0.085 3.915 7 O -0.572 6.572 8 C 0.130 3.870 9 N -0.729 5.729 10 C 0.510 3.490 11 O -0.557 6.557 12 C -0.117 4.117 13 C 0.083 3.917 14 H 0.023 0.977 15 C -0.485 4.485 16 H 0.047 0.953 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.933 3.067 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.263 1.263 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.390 0.610 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.411 0.589 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.253 0.747 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 -15.149 5.889 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.143 4.143 3 C -0.124 4.124 4 C -0.100 4.100 5 H 0.106 0.894 6 C 0.007 3.993 7 O -0.380 6.380 8 C 0.006 3.994 9 N -0.384 5.384 10 C 0.297 3.703 11 O -0.433 6.433 12 C -0.157 4.157 13 C 0.064 3.936 14 H 0.042 0.958 15 C -0.523 4.523 16 H 0.065 0.935 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.760 3.240 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.046 4.046 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.240 0.760 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.247 0.753 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.217 -14.377 4.727 18.260 hybrid contribution 0.103 0.576 -0.525 0.786 sum -10.114 -13.802 4.202 17.619 Atomic orbital electron populations 1.23693 0.95758 1.01554 1.02575 1.22591 0.95991 0.97395 0.98304 1.20706 0.97729 0.96454 0.97471 1.21244 0.96350 0.96975 0.95475 0.89412 1.22083 0.94539 0.86428 0.96258 1.86507 1.66759 1.37370 1.47359 1.21210 0.89504 0.97749 0.90968 1.45977 1.34063 1.23286 1.35110 1.21050 0.81769 0.81701 0.85742 1.90750 1.71503 1.35720 1.45339 1.21682 0.96233 1.01382 0.96402 1.17611 0.91927 0.93225 0.90870 0.95816 1.20996 1.33413 0.91940 1.05920 0.93500 1.25465 0.96355 0.95850 0.99784 1.70046 1.49505 0.97408 1.38732 0.85949 0.78276 0.77590 0.82159 1.21624 1.21319 1.18716 1.20573 0.97182 0.93441 0.93405 1.21041 0.95894 0.99463 0.98182 1.21370 0.99035 0.99456 0.94571 1.21259 0.99389 0.95533 1.00409 1.21284 0.95906 0.99505 0.97934 1.21102 1.00708 0.98740 0.95652 0.89105 0.88248 0.87857 0.91374 0.90771 0.93713 0.92919 0.76039 0.92777 0.92751 0.75280 0.88962 0.88571 0.93819 0.86640 0.84179 0.83916 0.85087 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.26 14.08 67.79 0.95 -2.30 16 2 C -0.12 -2.21 7.31 25.65 0.19 -2.02 16 3 C -0.09 -1.58 5.13 29.85 0.15 -1.43 16 4 C -0.08 -1.54 2.26 -10.79 -0.02 -1.56 16 5 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 6 C 0.08 1.38 6.34 71.98 0.46 1.83 16 7 O -0.57 -8.48 11.22 -148.98 -1.67 -10.15 16 8 C 0.13 3.37 5.06 86.38 0.44 3.81 16 9 N -0.73 -20.35 5.23 -463.06 -2.42 -22.78 16 10 C 0.51 20.22 7.58 87.66 0.66 20.89 16 11 O -0.56 -28.90 14.98 -3.05 -0.05 -28.94 16 12 C -0.12 -4.44 4.95 29.85 0.15 -4.29 16 13 C 0.08 4.06 1.67 -12.29 -0.02 4.04 16 14 H 0.02 1.38 6.98 -2.39 -0.02 1.36 16 15 C -0.48 -26.73 6.37 25.60 0.16 -26.57 16 16 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 17 C 0.02 1.41 5.45 84.66 0.46 1.87 16 18 N -0.92 -56.72 12.87 21.45 0.28 -56.44 16 19 Si 0.93 47.05 29.54 68.60 2.03 49.08 16 20 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.05 -2.02 4.77 -19.87 -0.09 -2.12 16 24 C -0.13 -4.95 8.86 22.27 0.20 -4.75 16 25 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 26 C -0.15 -4.57 10.05 22.27 0.22 -4.35 16 27 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 28 C -0.14 -6.15 9.67 22.27 0.22 -5.94 16 29 H 0.09 1.44 7.84 -2.91 -0.02 1.42 16 30 H 0.10 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.10 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.79 7.07 -2.38 -0.02 0.77 16 36 H 0.39 2.83 9.12 -74.06 -0.68 2.16 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 8.47 7.65 -92.71 -0.71 7.76 16 40 H 0.09 2.95 8.14 -2.38 -0.02 2.94 16 41 H 0.10 3.25 7.77 -2.39 -0.02 3.23 16 42 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.12 4.31 7.76 -2.91 -0.02 4.29 16 44 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 45 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 46 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 47 H 0.09 4.24 7.95 -2.91 -0.02 4.22 16 Total: -1.00 -75.18 390.01 2.30 -72.88 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.43 Total: 27.37 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 4.57 Total: -31.00 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.15 Total: -79.22 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.72 Total: -39.10 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.18 2.30 -72.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.162 kcal (2) G-P(sol) polarization free energy of solvation -75.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds