Wall clock time and date at job start Tue Mar 31 2020 11:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30990 * 120.00013 * 2 1 4 4 C 1.50697 * 120.00154 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46996 * 124.99846 * 4 3 2 6 6 H 1.08990 * 109.47473 * 305.00488 * 5 4 3 7 7 C 1.53003 * 109.47087 * 185.00146 * 5 4 3 8 8 O 1.42900 * 109.47360 * 305.00273 * 7 5 4 9 9 N 1.46499 * 109.46776 * 65.00411 * 5 4 3 10 10 C 1.34781 * 120.00105 * 204.72300 * 9 5 4 11 11 O 1.21279 * 119.99657 * 0.27271 * 10 9 5 12 12 C 1.50698 * 120.00287 * 180.27729 * 10 9 5 13 13 C 1.52995 * 109.47041 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47267 * 305.00093 * 13 12 10 15 15 C 1.50701 * 109.47012 * 64.99999 * 13 12 10 16 16 H 1.08002 * 120.00227 * 29.58440 * 15 13 12 17 17 C 1.37878 * 119.99990 * 209.57984 * 15 13 12 18 18 N 1.31523 * 119.99890 * 4.94403 * 17 15 13 19 19 Si 1.86800 * 120.00350 * 184.93766 * 17 15 13 20 20 H 1.48497 * 109.46906 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47542 * 210.00639 * 19 17 15 22 22 H 1.48503 * 109.46997 * 330.00680 * 19 17 15 23 23 C 1.50703 * 109.47207 * 184.99609 * 13 12 10 24 24 C 1.38233 * 119.99994 * 296.77404 * 23 13 12 25 25 C 1.38238 * 119.99592 * 179.78354 * 24 23 13 26 26 C 1.38237 * 120.00351 * 0.44100 * 25 24 23 27 27 C 1.38236 * 119.99589 * 359.81530 * 26 25 24 28 28 C 1.38234 * 119.99767 * 117.03845 * 23 13 12 29 29 H 1.09001 * 109.47132 * 299.99994 * 1 2 3 30 30 H 1.09001 * 109.47442 * 60.00190 * 1 2 3 31 31 H 1.08999 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99802 * 179.97438 * 2 1 3 33 33 H 1.08002 * 120.00185 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47224 * 5.00649 * 4 3 2 35 35 H 1.08999 * 109.47419 * 244.99893 * 4 3 2 36 36 H 1.08997 * 109.46983 * 65.00302 * 7 5 4 37 37 H 1.09002 * 109.46626 * 185.00329 * 7 5 4 38 38 H 0.96694 * 114.00321 * 179.97438 * 8 7 5 39 39 H 0.97002 * 120.00405 * 25.00323 * 9 5 4 40 40 H 1.08997 * 109.47120 * 300.00075 * 12 10 9 41 41 H 1.09003 * 109.47124 * 59.99793 * 12 10 9 42 42 H 0.96998 * 119.99926 * 179.97438 * 18 17 15 43 43 H 1.07994 * 120.00027 * 359.97438 * 24 23 13 44 44 H 1.08007 * 119.99517 * 180.27432 * 25 24 23 45 45 H 1.07993 * 120.00099 * 179.83278 * 26 25 24 46 46 H 1.08001 * 119.99880 * 180.02562 * 27 26 25 47 47 H 1.08003 * 119.99876 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6689 1.1344 0.0006 5 6 4.1794 1.9616 -1.1811 6 1 3.7451 1.5811 -2.1055 7 6 5.7042 1.8597 -1.2542 8 8 6.2683 2.2489 -0.0002 9 7 3.7917 3.3627 -1.0000 10 6 3.6707 4.1723 -2.0708 11 8 3.8778 3.7395 -3.1846 12 6 3.2780 5.6152 -1.8840 13 6 3.2131 6.3066 -3.2473 14 1 4.1635 6.1784 -3.7653 15 6 2.1071 5.6955 -4.0683 16 1 1.2386 5.2790 -3.5797 17 6 2.2037 5.6681 -5.4435 18 7 3.3020 6.0862 -6.0339 19 14 0.7747 5.0372 -6.4679 20 1 -0.1309 6.1656 -6.8022 21 1 1.2932 4.4308 -7.7204 22 1 0.0258 4.0136 -5.6954 23 6 2.9412 7.7761 -3.0528 24 6 1.7553 8.1890 -2.4749 25 6 1.5078 9.5367 -2.2925 26 6 2.4423 10.4720 -2.6963 27 6 3.6260 10.0592 -3.2790 28 6 3.8754 8.7113 -3.4573 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 1.6220 2.0698 -0.0004 34 1 4.0323 0.1107 -0.0887 35 1 4.0319 1.5690 0.9320 36 1 5.9894 0.8316 -1.4773 37 1 6.0751 2.5183 -2.0395 38 1 7.2340 2.2082 0.0262 39 1 3.6261 3.7089 -0.1091 40 1 2.3011 5.6666 -1.4033 41 1 4.0176 6.1149 -1.2583 42 1 3.3702 6.0666 -7.0013 43 1 1.0235 7.4585 -2.1632 44 1 0.5831 9.8591 -1.8370 45 1 2.2478 11.5249 -2.5562 46 1 4.3563 10.7898 -3.5940 47 1 4.8003 8.3888 -3.9123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356771375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:37 Heat of formation + Delta-G solvation = -61.702381 kcal Electronic energy + Delta-G solvation = -26614.448984 eV Core-core repulsion = 22954.853648 eV Total energy + Delta-G solvation = -3659.595336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.34066 -38.31139 -37.11513 -35.75695 -34.12405 -33.61382 -31.49218 -30.73244 -29.98357 -28.77459 -27.83092 -25.44858 -24.44391 -22.84004 -21.63064 -20.96139 -20.02058 -19.43728 -19.18068 -17.42915 -16.60341 -16.18747 -15.90775 -15.53493 -14.91033 -14.63548 -14.36100 -14.09547 -13.97499 -13.78598 -13.75078 -13.55584 -13.21981 -12.87846 -12.56927 -12.36075 -12.11190 -12.06224 -11.83355 -11.67344 -11.54813 -11.37260 -11.27133 -10.87436 -10.85429 -10.64260 -10.54366 -10.23831 -10.02765 -9.99830 -9.39539 -9.06649 -8.93698 -8.75007 -8.45211 -8.27859 -8.02304 -7.59121 -5.89370 -3.88146 2.23187 2.31076 2.36912 3.38936 3.44786 3.47408 3.62136 3.77157 4.36687 4.54306 4.72179 4.77500 5.04213 5.08199 5.31125 5.37709 5.43222 5.45022 5.50146 5.60996 5.67985 5.70771 5.75245 5.75477 5.85645 5.89086 5.96791 6.03505 6.16060 6.22386 6.26324 6.33616 6.43574 6.57400 6.70024 6.82515 6.85463 6.94377 7.05773 7.07449 7.33171 7.48109 7.56797 7.61496 7.92057 7.97452 8.08994 8.22668 8.42977 9.10898 9.18835 9.72462 11.20807 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.004020 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.821624 B = 6962.965670 C = 7755.714336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.171 4.171 3 C -0.152 4.152 4 C -0.090 4.090 5 C 0.156 3.844 6 H 0.098 0.902 7 C 0.062 3.938 8 O -0.570 6.570 9 N -0.737 5.737 10 C 0.512 3.488 11 O -0.498 6.498 12 C -0.121 4.121 13 C 0.079 3.921 14 H 0.072 0.928 15 C -0.488 4.488 16 H 0.050 0.950 17 C 0.076 3.924 18 N -0.881 5.881 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.022 4.022 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.374 0.626 39 H 0.394 0.606 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -5.993 13.683 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.189 4.189 3 C -0.170 4.170 4 C -0.128 4.128 5 C 0.051 3.949 6 H 0.115 0.885 7 C -0.017 4.017 8 O -0.374 6.374 9 N -0.392 5.392 10 C 0.299 3.701 11 O -0.370 6.370 12 C -0.162 4.162 13 C 0.060 3.940 14 H 0.090 0.910 15 C -0.525 4.525 16 H 0.068 0.932 17 C -0.127 4.127 18 N -0.519 5.519 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.023 4.023 24 C -0.132 4.132 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.220 0.780 39 H 0.227 0.773 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.476 -6.214 12.768 14.277 hybrid contribution -0.347 -0.199 -0.580 0.705 sum 1.129 -6.413 12.188 13.818 Atomic orbital electron populations 1.20829 0.93351 1.01936 1.02025 1.22794 0.96099 0.97785 1.02243 1.22843 0.95684 0.98412 1.00038 1.20859 0.92668 1.00263 0.99009 1.20839 0.91552 0.83179 0.99370 0.88459 1.22713 0.94784 0.98337 0.85845 1.86443 1.24921 1.91174 1.34898 1.46151 1.73214 1.09901 1.09889 1.20898 0.76594 0.88539 0.84049 1.90756 1.46680 1.75810 1.23722 1.21755 1.00834 0.91705 1.01878 1.17827 1.00928 0.85486 0.89740 0.90994 1.20673 1.03490 1.37541 0.90845 0.93202 1.24810 0.95115 0.94693 0.98050 1.69907 1.25396 1.47198 1.09355 0.86723 0.83054 0.78879 0.80066 1.20919 1.21398 1.20075 1.20770 0.92068 0.98340 0.91080 1.20952 0.97399 0.94653 1.00244 1.20980 0.98617 0.93781 1.01677 1.20793 0.95419 0.98217 1.02955 1.20984 0.97190 0.95926 1.00582 1.21099 0.99897 0.92393 1.00367 0.91960 0.91613 0.92423 0.87760 0.87142 0.90832 0.89858 0.93497 0.92638 0.77980 0.77311 0.90671 0.91735 0.93227 0.86878 0.87682 0.87824 0.87662 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.17 36.01 0.37 -0.87 16 2 C -0.17 -1.86 9.87 -36.02 -0.36 -2.21 16 3 C -0.15 -1.78 8.89 -36.02 -0.32 -2.10 16 4 C -0.09 -1.01 4.92 -27.88 -0.14 -1.15 16 5 C 0.16 2.16 2.36 -67.93 -0.16 2.00 16 6 H 0.10 1.58 7.58 -51.93 -0.39 1.19 16 7 C 0.06 0.79 6.84 37.16 0.25 1.04 16 8 O -0.57 -6.43 12.83 -35.23 -0.45 -6.88 16 9 N -0.74 -11.19 4.72 -53.80 -0.25 -11.45 16 10 C 0.51 10.20 7.54 -10.98 -0.08 10.12 16 11 O -0.50 -12.34 14.65 5.56 0.08 -12.25 16 12 C -0.12 -2.37 4.94 -27.89 -0.14 -2.51 16 13 C 0.08 1.90 1.68 -92.92 -0.16 1.74 16 14 H 0.07 1.99 6.95 -51.93 -0.36 1.63 16 15 C -0.49 -13.17 6.38 -34.44 -0.22 -13.39 16 16 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.88 -26.08 12.85 55.43 0.71 -25.37 16 19 Si 0.88 22.35 29.54 -169.99 -5.02 17.32 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 24 C -0.11 -2.33 8.86 -39.58 -0.35 -2.68 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 26 C -0.16 -2.74 10.05 -39.58 -0.40 -3.14 16 27 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 28 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.01 7.84 -52.49 -0.41 0.60 16 33 H 0.11 1.38 8.02 -52.49 -0.42 0.95 16 34 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.08 0.92 7.73 -51.93 -0.40 0.51 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.37 2.70 9.12 45.56 0.42 3.12 16 39 H 0.39 5.08 8.60 -40.82 -0.35 4.73 16 40 H 0.07 1.36 7.76 -51.93 -0.40 0.96 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.11 2.22 7.75 -52.49 -0.41 1.81 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 45 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.11 2.45 7.95 -52.48 -0.42 2.03 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -32.87 394.64 -9.37 -42.23 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.91 Total: 11.02 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -3.47 Total: -20.58 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.46 Total: -36.81 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.37 Total: -19.14 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.87 -9.37 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356771375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.470 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds