Wall clock time and date at job start Tue Mar 31 2020 11:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30990 * 120.00013 * 2 1 4 4 C 1.50697 * 120.00154 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46996 * 124.99846 * 4 3 2 6 6 H 1.08990 * 109.47473 * 305.00488 * 5 4 3 7 7 C 1.53003 * 109.47087 * 185.00146 * 5 4 3 8 8 O 1.42900 * 109.47360 * 305.00273 * 7 5 4 9 9 N 1.46499 * 109.46776 * 65.00411 * 5 4 3 10 10 C 1.34781 * 120.00105 * 204.72300 * 9 5 4 11 11 O 1.21279 * 119.99657 * 0.27271 * 10 9 5 12 12 C 1.50698 * 120.00287 * 180.27729 * 10 9 5 13 13 C 1.52995 * 109.47041 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47267 * 305.00093 * 13 12 10 15 15 C 1.50701 * 109.47012 * 64.99999 * 13 12 10 16 16 H 1.08002 * 120.00227 * 29.58440 * 15 13 12 17 17 C 1.37878 * 119.99990 * 209.57984 * 15 13 12 18 18 N 1.31523 * 119.99890 * 4.94403 * 17 15 13 19 19 Si 1.86800 * 120.00350 * 184.93766 * 17 15 13 20 20 H 1.48497 * 109.46906 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47542 * 210.00639 * 19 17 15 22 22 H 1.48503 * 109.46997 * 330.00680 * 19 17 15 23 23 C 1.50703 * 109.47207 * 184.99609 * 13 12 10 24 24 C 1.38233 * 119.99994 * 296.77404 * 23 13 12 25 25 C 1.38238 * 119.99592 * 179.78354 * 24 23 13 26 26 C 1.38237 * 120.00351 * 0.44100 * 25 24 23 27 27 C 1.38236 * 119.99589 * 359.81530 * 26 25 24 28 28 C 1.38234 * 119.99767 * 117.03845 * 23 13 12 29 29 H 1.09001 * 109.47132 * 299.99994 * 1 2 3 30 30 H 1.09001 * 109.47442 * 60.00190 * 1 2 3 31 31 H 1.08999 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99802 * 179.97438 * 2 1 3 33 33 H 1.08002 * 120.00185 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47224 * 5.00649 * 4 3 2 35 35 H 1.08999 * 109.47419 * 244.99893 * 4 3 2 36 36 H 1.08997 * 109.46983 * 65.00302 * 7 5 4 37 37 H 1.09002 * 109.46626 * 185.00329 * 7 5 4 38 38 H 0.96694 * 114.00321 * 179.97438 * 8 7 5 39 39 H 0.97002 * 120.00405 * 25.00323 * 9 5 4 40 40 H 1.08997 * 109.47120 * 300.00075 * 12 10 9 41 41 H 1.09003 * 109.47124 * 59.99793 * 12 10 9 42 42 H 0.96998 * 119.99926 * 179.97438 * 18 17 15 43 43 H 1.07994 * 120.00027 * 359.97438 * 24 23 13 44 44 H 1.08007 * 119.99517 * 180.27432 * 25 24 23 45 45 H 1.07993 * 120.00099 * 179.83278 * 26 25 24 46 46 H 1.08001 * 119.99880 * 180.02562 * 27 26 25 47 47 H 1.08003 * 119.99876 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6689 1.1344 0.0006 5 6 4.1794 1.9616 -1.1811 6 1 3.7451 1.5811 -2.1055 7 6 5.7042 1.8597 -1.2542 8 8 6.2683 2.2489 -0.0002 9 7 3.7917 3.3627 -1.0000 10 6 3.6707 4.1723 -2.0708 11 8 3.8778 3.7395 -3.1846 12 6 3.2780 5.6152 -1.8840 13 6 3.2131 6.3066 -3.2473 14 1 4.1635 6.1784 -3.7653 15 6 2.1071 5.6955 -4.0683 16 1 1.2386 5.2790 -3.5797 17 6 2.2037 5.6681 -5.4435 18 7 3.3020 6.0862 -6.0339 19 14 0.7747 5.0372 -6.4679 20 1 -0.1309 6.1656 -6.8022 21 1 1.2932 4.4308 -7.7204 22 1 0.0258 4.0136 -5.6954 23 6 2.9412 7.7761 -3.0528 24 6 1.7553 8.1890 -2.4749 25 6 1.5078 9.5367 -2.2925 26 6 2.4423 10.4720 -2.6963 27 6 3.6260 10.0592 -3.2790 28 6 3.8754 8.7113 -3.4573 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 1.6220 2.0698 -0.0004 34 1 4.0323 0.1107 -0.0887 35 1 4.0319 1.5690 0.9320 36 1 5.9894 0.8316 -1.4773 37 1 6.0751 2.5183 -2.0395 38 1 7.2340 2.2082 0.0262 39 1 3.6261 3.7089 -0.1091 40 1 2.3011 5.6666 -1.4033 41 1 4.0176 6.1149 -1.2583 42 1 3.3702 6.0666 -7.0013 43 1 1.0235 7.4585 -2.1632 44 1 0.5831 9.8591 -1.8370 45 1 2.2478 11.5249 -2.5562 46 1 4.3563 10.7898 -3.5940 47 1 4.8003 8.3888 -3.9123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356771375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:36 Heat of formation + Delta-G solvation = -83.013142 kcal Electronic energy + Delta-G solvation = -26615.373088 eV Core-core repulsion = 22954.853648 eV Total energy + Delta-G solvation = -3660.519440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82393 -39.80851 -38.34466 -36.67788 -35.79907 -34.95976 -33.42275 -31.97882 -31.49753 -30.19260 -28.92196 -27.35995 -25.40408 -24.53517 -23.15324 -22.22665 -21.41185 -20.84086 -20.33472 -18.54623 -18.43682 -17.80801 -17.20568 -16.94747 -16.43870 -16.18183 -15.75664 -15.51013 -15.39090 -15.12014 -14.88613 -14.56543 -14.43603 -14.21424 -14.01203 -13.95697 -13.64338 -13.53307 -13.24022 -13.02157 -12.83787 -12.79106 -12.52438 -12.47892 -12.40158 -12.16464 -11.83678 -11.82005 -11.66976 -11.28529 -11.01163 -10.96896 -10.54644 -10.33048 -9.93408 -9.70286 -9.54312 -9.19271 -8.02680 -6.04980 0.77798 0.84162 1.34604 1.35607 1.37062 1.44644 2.03660 2.44551 2.46138 3.18727 3.36236 3.42662 3.77949 4.02397 4.18649 4.25937 4.26681 4.36223 4.36656 4.41133 4.43280 4.50949 4.56203 4.62483 4.65612 4.75115 4.75362 4.82398 4.88651 4.93492 5.00283 5.05467 5.15606 5.19090 5.27528 5.38418 5.52527 5.67349 5.73991 5.79588 5.82969 5.83688 5.96443 5.98238 6.18919 6.42795 6.46937 6.85525 6.88113 7.02337 7.56610 7.67079 9.07005 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.004020 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.821624 B = 6962.965670 C = 7755.714336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.166 4.166 3 C -0.171 4.171 4 C -0.075 4.075 5 C 0.150 3.850 6 H 0.069 0.931 7 C 0.071 3.929 8 O -0.573 6.573 9 N -0.716 5.716 10 C 0.512 3.488 11 O -0.556 6.556 12 C -0.116 4.116 13 C 0.083 3.917 14 H 0.023 0.977 15 C -0.480 4.480 16 H 0.045 0.955 17 C 0.021 3.979 18 N -0.917 5.917 19 Si 0.934 3.066 20 H -0.274 1.274 21 H -0.292 1.292 22 H -0.272 1.272 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.129 4.129 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.394 0.606 39 H 0.408 0.592 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.253 0.747 43 H 0.116 0.884 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -5.446 16.191 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C -0.189 4.189 4 C -0.112 4.112 5 C 0.045 3.955 6 H 0.087 0.913 7 C -0.008 4.008 8 O -0.381 6.381 9 N -0.370 5.370 10 C 0.299 3.701 11 O -0.433 6.433 12 C -0.156 4.156 13 C 0.064 3.936 14 H 0.041 0.959 15 C -0.518 4.518 16 H 0.063 0.937 17 C -0.178 4.178 18 N -0.557 5.557 19 Si 0.761 3.239 20 H -0.200 1.200 21 H -0.218 1.218 22 H -0.197 1.197 23 C -0.047 4.047 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.243 0.757 39 H 0.244 0.756 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.150 0.850 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.237 -5.677 15.351 16.368 hybrid contribution 0.066 -0.345 -1.225 1.274 sum 0.303 -6.022 14.126 15.359 Atomic orbital electron populations 1.20875 0.92875 1.02915 1.01758 1.23044 0.96690 0.98093 1.00543 1.22850 0.96019 0.98364 1.01701 1.20748 0.92242 1.00573 0.97637 1.20969 0.92627 0.82275 0.99608 0.91254 1.22478 0.93733 0.99038 0.85540 1.86385 1.26875 1.91190 1.33651 1.45916 1.71413 1.10257 1.09390 1.20979 0.75978 0.89038 0.84103 1.90736 1.49664 1.76785 1.26091 1.21647 1.02521 0.91470 0.99968 1.17596 0.97404 0.87523 0.91092 0.95864 1.20950 1.03576 1.36199 0.91103 0.93694 1.25496 0.97069 0.95757 0.99458 1.70060 1.27104 1.49598 1.08970 0.85927 0.80765 0.78580 0.78600 1.20021 1.21800 1.19681 1.20580 0.93662 0.97078 0.93354 1.21045 0.96555 0.96246 1.00651 1.21381 0.99958 0.92624 1.00480 1.21267 0.94174 1.00233 1.00856 1.21287 0.98490 0.94951 0.99934 1.21110 0.99542 0.94050 1.01592 0.91184 0.92895 0.90873 0.86249 0.88348 0.89008 0.89105 0.90923 0.95931 0.75704 0.75600 0.88829 0.89518 0.93847 0.86629 0.84104 0.83826 0.85039 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 10.17 71.24 0.72 -1.62 16 2 C -0.17 -3.31 9.87 25.66 0.25 -3.06 16 3 C -0.17 -3.81 8.89 25.66 0.23 -3.58 16 4 C -0.07 -1.54 4.92 29.85 0.15 -1.39 16 5 C 0.15 4.16 2.36 45.00 0.11 4.27 16 6 H 0.07 2.34 7.58 -2.39 -0.02 2.33 16 7 C 0.07 1.78 6.84 71.98 0.49 2.27 16 8 O -0.57 -11.99 12.83 -148.98 -1.91 -13.90 16 9 N -0.72 -21.87 4.72 -442.53 -2.09 -23.96 16 10 C 0.51 21.14 7.54 87.66 0.66 21.80 16 11 O -0.56 -29.27 14.65 -3.03 -0.04 -29.32 16 12 C -0.12 -4.63 4.94 29.85 0.15 -4.48 16 13 C 0.08 4.17 1.68 -12.29 -0.02 4.15 16 14 H 0.02 1.38 6.95 -2.39 -0.02 1.36 16 15 C -0.48 -26.85 6.38 25.60 0.16 -26.68 16 16 H 0.04 2.49 7.82 -2.91 -0.02 2.46 16 17 C 0.02 1.21 5.45 84.65 0.46 1.67 16 18 N -0.92 -57.23 12.85 21.45 0.28 -56.95 16 19 Si 0.93 47.14 29.54 68.60 2.03 49.17 16 20 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 23 C -0.05 -2.09 4.77 -19.87 -0.09 -2.19 16 24 C -0.13 -5.02 8.86 22.27 0.20 -4.82 16 25 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 26 C -0.15 -4.64 10.05 22.27 0.22 -4.42 16 27 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 28 C -0.14 -6.32 9.67 22.27 0.22 -6.10 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 2.01 7.84 -2.91 -0.02 1.99 16 33 H 0.10 2.41 8.02 -2.91 -0.02 2.38 16 34 H 0.09 1.60 7.79 -2.39 -0.02 1.58 16 35 H 0.09 1.77 7.73 -2.39 -0.02 1.75 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.39 4.95 9.12 -74.06 -0.68 4.27 16 39 H 0.41 10.14 8.60 -92.71 -0.80 9.35 16 40 H 0.09 3.36 7.76 -2.39 -0.02 3.34 16 41 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.12 4.41 7.75 -2.91 -0.02 4.38 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 47 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -75.64 394.64 2.10 -73.55 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.51 Total: 33.90 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.35 Total: -32.49 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.81 Total: -80.91 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.96 Total: -43.22 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -75.64 2.10 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356771375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.466 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds