Wall clock time and date at job start Tue Mar 31 2020 11:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.31001 * 120.00114 * 2 1 4 4 C 1.50706 * 120.00129 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47179 * 125.00014 * 4 3 2 6 6 H 1.09008 * 109.46961 * 304.99653 * 5 4 3 7 7 C 1.53001 * 109.47083 * 185.00304 * 5 4 3 8 8 O 1.42905 * 109.46721 * 304.99504 * 7 5 4 9 9 N 1.46492 * 109.47421 * 64.99819 * 5 4 3 10 10 C 1.34778 * 120.00353 * 204.99981 * 9 5 4 11 11 O 1.21274 * 119.99647 * 0.02562 * 10 9 5 12 12 C 1.50694 * 120.00048 * 179.97438 * 10 9 5 13 13 C 1.52999 * 109.46934 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47188 * 55.00304 * 13 12 10 15 15 C 1.50694 * 109.47394 * 295.00042 * 13 12 10 16 16 H 1.07998 * 120.00282 * 325.85045 * 15 13 12 17 17 C 1.37879 * 120.00247 * 145.84057 * 15 13 12 18 18 N 1.31519 * 119.99973 * 6.12867 * 17 15 13 19 19 Si 1.86800 * 120.00287 * 186.12163 * 17 15 13 20 20 H 1.48501 * 109.47038 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46995 * 120.00063 * 19 17 15 22 22 H 1.48497 * 109.47370 * 240.00248 * 19 17 15 23 23 C 1.50703 * 109.47196 * 175.00003 * 13 12 10 24 24 C 1.38235 * 119.99912 * 63.47389 * 23 13 12 25 25 C 1.38238 * 119.99985 * 179.79199 * 24 23 13 26 26 C 1.38228 * 119.99909 * 0.43176 * 25 24 23 27 27 C 1.38242 * 120.00131 * 359.81918 * 26 25 24 28 28 C 1.38232 * 119.99762 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46831 * 300.00049 * 1 2 3 31 31 H 1.09002 * 109.47260 * 59.99741 * 1 2 3 32 32 H 1.08004 * 120.00122 * 180.02562 * 2 1 3 33 33 H 1.07998 * 120.00366 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47135 * 4.99610 * 4 3 2 35 35 H 1.08998 * 109.46896 * 244.99954 * 4 3 2 36 36 H 1.08997 * 109.47392 * 64.99332 * 7 5 4 37 37 H 1.09002 * 109.46880 * 185.00064 * 7 5 4 38 38 H 0.96698 * 114.00068 * 180.02562 * 8 7 5 39 39 H 0.97005 * 119.99883 * 24.99828 * 9 5 4 40 40 H 1.09000 * 109.47465 * 300.00006 * 12 10 9 41 41 H 1.09003 * 109.47602 * 60.00438 * 12 10 9 42 42 H 0.96996 * 120.00193 * 180.02562 * 18 17 15 43 43 H 1.08004 * 119.99851 * 359.97438 * 24 23 13 44 44 H 1.07998 * 119.99858 * 180.27740 * 25 24 23 45 45 H 1.08005 * 120.00186 * 179.83331 * 26 25 24 46 46 H 1.08000 * 119.99849 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99673 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 -0.0006 5 6 4.1786 1.9621 -1.1822 6 1 3.7436 1.5819 -2.1066 7 6 5.7034 1.8602 -1.2565 8 8 6.2683 2.2490 -0.0027 9 7 3.7911 3.3631 -1.0004 10 6 3.6639 4.1717 -2.0712 11 8 3.8697 3.7392 -3.1853 12 6 3.2647 5.6127 -1.8841 13 6 3.1936 6.3033 -3.2475 14 1 2.5217 5.7476 -3.9017 15 6 4.5694 6.3471 -3.8608 16 1 5.4384 6.4638 -3.2301 17 6 4.7190 6.2380 -5.2271 18 7 3.6588 6.2171 -6.0051 19 14 6.4275 6.1202 -5.9733 20 1 7.4441 6.1652 -4.8918 21 1 6.5549 4.8423 -6.7189 22 1 6.6416 7.2588 -6.9022 23 6 2.6766 7.7080 -3.0728 24 6 3.4042 8.6260 -2.3386 25 6 2.9320 9.9157 -2.1819 26 6 1.7280 10.2850 -2.7518 27 6 0.9979 9.3656 -3.4817 28 6 1.4722 8.0771 -3.6419 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.0470 -0.9353 -0.0004 33 1 1.6220 2.0698 -0.0004 34 1 4.0323 0.1108 -0.0904 35 1 4.0327 1.5686 0.9307 36 1 5.9883 0.8321 -1.4802 37 1 6.0737 2.5191 -2.0418 38 1 7.2341 2.2090 0.0228 39 1 3.6260 3.7090 -0.1092 40 1 2.2886 5.6596 -1.4013 41 1 4.0032 6.1163 -1.2603 42 1 3.7640 6.1400 -6.9662 43 1 4.3429 8.3363 -1.8899 44 1 3.5026 10.6341 -1.6121 45 1 1.3578 11.2919 -2.6272 46 1 0.0571 9.6540 -3.9266 47 1 0.9016 7.3586 -4.2118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356771377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:40 Heat of formation + Delta-G solvation = -61.995649 kcal Electronic energy + Delta-G solvation = -26606.170810 eV Core-core repulsion = 22946.562756 eV Total energy + Delta-G solvation = -3659.608053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.34350 -38.30009 -37.10442 -35.76054 -34.12855 -33.62062 -31.50292 -30.74610 -29.97228 -28.77361 -27.83173 -25.44271 -24.45944 -22.84745 -21.62131 -20.95872 -20.02009 -19.47141 -19.18475 -17.39553 -16.56514 -16.23498 -15.88653 -15.55364 -14.92143 -14.57932 -14.37261 -14.13325 -13.99403 -13.84367 -13.65744 -13.58058 -13.25986 -12.88215 -12.54405 -12.30595 -12.24891 -12.03815 -11.80998 -11.69952 -11.52989 -11.37285 -11.30591 -10.92178 -10.84202 -10.64522 -10.52549 -10.22264 -10.03235 -9.96828 -9.40799 -9.01239 -8.97201 -8.80326 -8.43874 -8.29936 -8.01091 -7.56840 -5.90652 -3.89428 2.19008 2.32282 2.38305 3.37816 3.44937 3.46999 3.61248 3.77004 4.40017 4.53917 4.69738 4.78931 5.02067 5.06723 5.28142 5.38689 5.43465 5.44876 5.48759 5.56016 5.68592 5.69938 5.76047 5.76427 5.85153 5.88543 5.95057 6.02889 6.15866 6.21788 6.26963 6.33699 6.44723 6.58217 6.65731 6.79426 6.86087 6.95255 7.05265 7.08845 7.34334 7.48637 7.57117 7.65383 7.89575 7.98699 8.08866 8.22086 8.42817 9.10489 9.17860 9.72144 11.19761 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.004130 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.110872 B = 6777.744514 C = 8153.426329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.172 4.172 3 C -0.151 4.151 4 C -0.091 4.091 5 C 0.157 3.843 6 H 0.096 0.904 7 C 0.061 3.939 8 O -0.570 6.570 9 N -0.736 5.736 10 C 0.513 3.487 11 O -0.500 6.500 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.071 0.929 15 C -0.489 4.489 16 H 0.050 0.950 17 C 0.078 3.922 18 N -0.881 5.881 19 Si 0.886 3.114 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.288 1.288 23 C -0.020 4.020 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.374 0.626 39 H 0.394 0.606 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -7.256 13.331 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.190 4.190 3 C -0.169 4.169 4 C -0.129 4.129 5 C 0.052 3.948 6 H 0.114 0.886 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.391 5.391 10 C 0.300 3.700 11 O -0.372 6.372 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.526 4.526 16 H 0.068 0.932 17 C -0.125 4.125 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.214 1.214 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.227 0.773 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.865 -7.509 12.410 14.785 hybrid contribution 1.615 0.118 -0.409 1.670 sum -1.250 -7.391 12.002 14.150 Atomic orbital electron populations 1.20826 0.93343 1.01967 1.01969 1.22805 0.96090 0.97823 1.02262 1.22846 0.95718 0.98344 1.00033 1.20868 0.92606 1.00305 0.99091 1.20826 0.91690 0.83127 0.99203 0.88568 1.22719 0.94725 0.98347 0.86018 1.86430 1.24942 1.91232 1.34840 1.46155 1.73155 1.09927 1.09897 1.20896 0.76648 0.88336 0.84084 1.90744 1.46979 1.75551 1.23926 1.21784 1.00232 0.91952 1.02297 1.17835 0.98616 0.87179 0.90272 0.91045 1.20707 0.90515 1.49752 0.91626 0.93192 1.24801 0.96013 0.94279 0.97371 1.69923 1.28335 1.49638 1.03989 0.86652 0.85363 0.77366 0.79193 1.20034 1.21096 1.21405 1.20743 0.91116 0.99073 0.91130 1.20950 0.99432 0.92940 1.00042 1.20970 0.96477 0.96434 1.01116 1.20789 0.96502 0.98622 1.01534 1.20980 0.99503 0.94271 0.99883 1.21084 0.96649 0.95826 1.00150 0.92393 0.91952 0.91673 0.87732 0.87195 0.90807 0.89817 0.93581 0.92395 0.77939 0.77292 0.91797 0.90601 0.93250 0.86929 0.87703 0.87844 0.87682 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.17 36.00 0.37 -0.76 16 2 C -0.17 -1.75 9.87 -36.03 -0.36 -2.10 16 3 C -0.15 -1.68 8.89 -36.02 -0.32 -2.00 16 4 C -0.09 -1.00 4.92 -27.88 -0.14 -1.13 16 5 C 0.16 2.17 2.36 -67.93 -0.16 2.01 16 6 H 0.10 1.52 7.58 -51.92 -0.39 1.13 16 7 C 0.06 0.81 6.85 37.16 0.25 1.06 16 8 O -0.57 -6.82 12.83 -35.23 -0.45 -7.28 16 9 N -0.74 -11.16 4.72 -53.81 -0.25 -11.41 16 10 C 0.51 10.19 7.54 -10.99 -0.08 10.11 16 11 O -0.50 -12.32 14.65 5.56 0.08 -12.24 16 12 C -0.12 -2.39 4.95 -27.89 -0.14 -2.52 16 13 C 0.08 1.92 1.67 -92.93 -0.16 1.76 16 14 H 0.07 1.97 6.97 -51.93 -0.36 1.61 16 15 C -0.49 -13.16 6.37 -34.44 -0.22 -13.38 16 16 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 17 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 18 N -0.88 -26.05 12.87 55.43 0.71 -25.34 16 19 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.94 16 24 C -0.12 -2.36 8.86 -39.58 -0.35 -2.71 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 26 C -0.16 -2.76 10.05 -39.58 -0.40 -3.16 16 27 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 28 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.96 7.84 -52.48 -0.41 0.55 16 33 H 0.11 1.27 8.02 -52.49 -0.42 0.85 16 34 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.08 0.92 7.73 -51.93 -0.40 0.52 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.37 3.04 9.12 45.56 0.42 3.45 16 39 H 0.39 5.07 8.60 -40.82 -0.35 4.72 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.39 7.77 -51.93 -0.40 0.99 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 2.23 7.76 -52.48 -0.41 1.82 16 44 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.11 2.44 7.95 -52.49 -0.42 2.02 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -32.76 394.69 -9.36 -42.12 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.91 Total: 11.03 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.47 Total: -20.16 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.46 Total: -36.75 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.37 Total: -19.52 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.76 -9.36 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356771377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.874 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds