Wall clock time and date at job start Tue Mar 31 2020 11:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.31001 * 120.00114 * 2 1 4 4 C 1.50706 * 120.00129 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47179 * 125.00014 * 4 3 2 6 6 H 1.09008 * 109.46961 * 304.99653 * 5 4 3 7 7 C 1.53001 * 109.47083 * 185.00304 * 5 4 3 8 8 O 1.42905 * 109.46721 * 304.99504 * 7 5 4 9 9 N 1.46492 * 109.47421 * 64.99819 * 5 4 3 10 10 C 1.34778 * 120.00353 * 204.99981 * 9 5 4 11 11 O 1.21274 * 119.99647 * 0.02562 * 10 9 5 12 12 C 1.50694 * 120.00048 * 179.97438 * 10 9 5 13 13 C 1.52999 * 109.46934 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47188 * 55.00304 * 13 12 10 15 15 C 1.50694 * 109.47394 * 295.00042 * 13 12 10 16 16 H 1.07998 * 120.00282 * 325.85045 * 15 13 12 17 17 C 1.37879 * 120.00247 * 145.84057 * 15 13 12 18 18 N 1.31519 * 119.99973 * 6.12867 * 17 15 13 19 19 Si 1.86800 * 120.00287 * 186.12163 * 17 15 13 20 20 H 1.48501 * 109.47038 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46995 * 120.00063 * 19 17 15 22 22 H 1.48497 * 109.47370 * 240.00248 * 19 17 15 23 23 C 1.50703 * 109.47196 * 175.00003 * 13 12 10 24 24 C 1.38235 * 119.99912 * 63.47389 * 23 13 12 25 25 C 1.38238 * 119.99985 * 179.79199 * 24 23 13 26 26 C 1.38228 * 119.99909 * 0.43176 * 25 24 23 27 27 C 1.38242 * 120.00131 * 359.81918 * 26 25 24 28 28 C 1.38232 * 119.99762 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46831 * 300.00049 * 1 2 3 31 31 H 1.09002 * 109.47260 * 59.99741 * 1 2 3 32 32 H 1.08004 * 120.00122 * 180.02562 * 2 1 3 33 33 H 1.07998 * 120.00366 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47135 * 4.99610 * 4 3 2 35 35 H 1.08998 * 109.46896 * 244.99954 * 4 3 2 36 36 H 1.08997 * 109.47392 * 64.99332 * 7 5 4 37 37 H 1.09002 * 109.46880 * 185.00064 * 7 5 4 38 38 H 0.96698 * 114.00068 * 180.02562 * 8 7 5 39 39 H 0.97005 * 119.99883 * 24.99828 * 9 5 4 40 40 H 1.09000 * 109.47465 * 300.00006 * 12 10 9 41 41 H 1.09003 * 109.47602 * 60.00438 * 12 10 9 42 42 H 0.96996 * 120.00193 * 180.02562 * 18 17 15 43 43 H 1.08004 * 119.99851 * 359.97438 * 24 23 13 44 44 H 1.07998 * 119.99858 * 180.27740 * 25 24 23 45 45 H 1.08005 * 120.00186 * 179.83331 * 26 25 24 46 46 H 1.08000 * 119.99849 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99673 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 -0.0006 5 6 4.1786 1.9621 -1.1822 6 1 3.7436 1.5819 -2.1066 7 6 5.7034 1.8602 -1.2565 8 8 6.2683 2.2490 -0.0027 9 7 3.7911 3.3631 -1.0004 10 6 3.6639 4.1717 -2.0712 11 8 3.8697 3.7392 -3.1853 12 6 3.2647 5.6127 -1.8841 13 6 3.1936 6.3033 -3.2475 14 1 2.5217 5.7476 -3.9017 15 6 4.5694 6.3471 -3.8608 16 1 5.4384 6.4638 -3.2301 17 6 4.7190 6.2380 -5.2271 18 7 3.6588 6.2171 -6.0051 19 14 6.4275 6.1202 -5.9733 20 1 7.4441 6.1652 -4.8918 21 1 6.5549 4.8423 -6.7189 22 1 6.6416 7.2588 -6.9022 23 6 2.6766 7.7080 -3.0728 24 6 3.4042 8.6260 -2.3386 25 6 2.9320 9.9157 -2.1819 26 6 1.7280 10.2850 -2.7518 27 6 0.9979 9.3656 -3.4817 28 6 1.4722 8.0771 -3.6419 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.0470 -0.9353 -0.0004 33 1 1.6220 2.0698 -0.0004 34 1 4.0323 0.1108 -0.0904 35 1 4.0327 1.5686 0.9307 36 1 5.9883 0.8321 -1.4802 37 1 6.0737 2.5191 -2.0418 38 1 7.2341 2.2090 0.0228 39 1 3.6260 3.7090 -0.1092 40 1 2.2886 5.6596 -1.4013 41 1 4.0032 6.1163 -1.2603 42 1 3.7640 6.1400 -6.9662 43 1 4.3429 8.3363 -1.8899 44 1 3.5026 10.6341 -1.6121 45 1 1.3578 11.2919 -2.6272 46 1 0.0571 9.6540 -3.9266 47 1 0.9016 7.3586 -4.2118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356771377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:39 Heat of formation + Delta-G solvation = -83.169782 kcal Electronic energy + Delta-G solvation = -26607.088989 eV Core-core repulsion = 22946.562756 eV Total energy + Delta-G solvation = -3660.526232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82534 -39.80135 -38.34607 -36.67704 -35.79693 -34.95941 -33.42857 -31.97828 -31.49024 -30.18423 -28.92275 -27.35353 -25.40485 -24.53764 -23.14884 -22.22206 -21.41028 -20.84335 -20.32906 -18.55043 -18.41391 -17.83507 -17.19315 -16.97450 -16.44505 -16.14859 -15.72083 -15.51333 -15.47559 -15.04348 -14.91482 -14.58997 -14.41840 -14.19318 -14.03087 -13.95412 -13.63645 -13.52609 -13.21288 -13.03591 -12.88199 -12.78552 -12.52730 -12.44232 -12.40391 -12.15857 -11.82614 -11.81029 -11.67109 -11.30710 -11.01494 -10.93668 -10.59946 -10.29976 -9.93546 -9.70274 -9.53498 -9.17885 -8.03805 -6.05723 0.78607 0.85205 1.33936 1.34956 1.37259 1.44939 2.03204 2.44563 2.45984 3.19522 3.36940 3.42223 3.77986 4.02696 4.18687 4.26219 4.27187 4.36755 4.37138 4.40876 4.43372 4.50758 4.56273 4.62839 4.65987 4.74657 4.77347 4.83757 4.89057 4.94181 5.00783 5.05806 5.16464 5.19909 5.28397 5.38789 5.53953 5.64823 5.73626 5.79906 5.83373 5.84474 5.96450 5.98535 6.18745 6.43160 6.47751 6.85035 6.86629 7.02125 7.56793 7.66590 9.06329 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.004130 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.110872 B = 6777.744514 C = 8153.426329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.165 4.165 3 C -0.171 4.171 4 C -0.075 4.075 5 C 0.152 3.848 6 H 0.072 0.928 7 C 0.069 3.931 8 O -0.573 6.573 9 N -0.715 5.715 10 C 0.513 3.487 11 O -0.558 6.558 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.023 0.977 15 C -0.480 4.480 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.934 3.066 20 H -0.266 1.266 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.393 0.607 39 H 0.408 0.592 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.253 0.747 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -6.373 15.975 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.183 4.183 3 C -0.189 4.189 4 C -0.112 4.112 5 C 0.047 3.953 6 H 0.090 0.910 7 C -0.010 4.010 8 O -0.381 6.381 9 N -0.370 5.370 10 C 0.300 3.700 11 O -0.434 6.434 12 C -0.157 4.157 13 C 0.064 3.936 14 H 0.042 0.958 15 C -0.518 4.518 16 H 0.063 0.937 17 C -0.175 4.175 18 N -0.558 5.558 19 Si 0.762 3.238 20 H -0.190 1.190 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.242 0.758 39 H 0.244 0.756 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.150 0.850 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.532 -6.629 15.132 16.713 hybrid contribution 1.451 -0.153 -1.105 1.830 sum -1.081 -6.782 14.026 15.617 Atomic orbital electron populations 1.20875 0.92730 1.02935 1.01850 1.23053 0.96771 0.98046 1.00451 1.22837 0.95844 0.98421 1.01796 1.20747 0.92424 1.00504 0.97569 1.20960 0.92410 0.82284 0.99688 0.91027 1.22506 0.94034 0.98941 0.85537 1.86378 1.26796 1.91249 1.33633 1.45918 1.71352 1.10280 1.09403 1.20969 0.76061 0.88814 0.84147 1.90725 1.49883 1.76553 1.26235 1.21663 1.02087 0.91655 1.00255 1.17610 0.96031 0.88495 0.91425 0.95840 1.20968 0.91771 1.47609 0.91463 0.93710 1.25469 0.98717 0.95065 0.98234 1.70062 1.29881 1.52128 1.03717 0.85875 0.82346 0.76950 0.78663 1.19036 1.21840 1.20847 1.20569 0.92383 0.98307 0.93255 1.21035 0.99455 0.93875 1.00272 1.21368 0.96762 0.95842 1.00445 1.21262 0.95742 1.00000 0.99594 1.21285 1.00607 0.93099 0.99611 1.21097 0.96965 0.97174 1.00965 0.90928 0.91223 0.92619 0.86378 0.88164 0.89068 0.89225 0.90965 0.96151 0.75792 0.75584 0.89372 0.88981 0.93824 0.86771 0.84159 0.83850 0.85047 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 10.17 71.23 0.72 -1.42 16 2 C -0.17 -3.11 9.87 25.64 0.25 -2.86 16 3 C -0.17 -3.61 8.89 25.65 0.23 -3.38 16 4 C -0.08 -1.52 4.92 29.85 0.15 -1.38 16 5 C 0.15 4.18 2.36 44.99 0.11 4.29 16 6 H 0.07 2.36 7.58 -2.38 -0.02 2.34 16 7 C 0.07 1.80 6.85 71.98 0.49 2.29 16 8 O -0.57 -12.68 12.83 -148.98 -1.91 -14.59 16 9 N -0.72 -21.75 4.72 -442.55 -2.09 -23.84 16 10 C 0.51 21.06 7.54 87.65 0.66 21.73 16 11 O -0.56 -29.11 14.65 -3.01 -0.04 -29.16 16 12 C -0.12 -4.63 4.95 29.85 0.15 -4.49 16 13 C 0.08 4.19 1.67 -12.29 -0.02 4.17 16 14 H 0.02 1.39 6.97 -2.38 -0.02 1.37 16 15 C -0.48 -26.78 6.37 25.60 0.16 -26.61 16 16 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.39 5.45 84.65 0.46 1.85 16 18 N -0.92 -57.13 12.87 21.45 0.28 -56.86 16 19 Si 0.93 47.22 29.54 68.60 2.03 49.25 16 20 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 22 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.04 -2.02 4.77 -19.87 -0.09 -2.12 16 24 C -0.13 -5.10 8.86 22.27 0.20 -4.90 16 25 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 26 C -0.15 -4.68 10.05 22.27 0.22 -4.45 16 27 C -0.13 -4.57 10.05 22.27 0.22 -4.34 16 28 C -0.14 -6.27 9.67 22.27 0.22 -6.06 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.12 1.89 7.84 -2.91 -0.02 1.87 16 33 H 0.10 2.29 8.02 -2.91 -0.02 2.27 16 34 H 0.09 1.57 7.79 -2.39 -0.02 1.55 16 35 H 0.09 1.74 7.73 -2.39 -0.02 1.73 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.39 5.56 9.12 -74.06 -0.68 4.88 16 39 H 0.41 10.09 8.60 -92.70 -0.80 9.29 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.09 3.34 7.77 -2.39 -0.02 3.32 16 42 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.11 4.40 7.76 -2.91 -0.02 4.37 16 44 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 46 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 47 H 0.09 4.30 7.95 -2.91 -0.02 4.28 16 Total: -1.00 -75.23 394.69 2.10 -73.13 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.51 Total: 33.70 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.35 Total: -31.65 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.81 Total: -80.69 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.95 Total: -43.75 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -75.23 2.10 -73.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356771377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.035 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds