Wall clock time and date at job start Tue Mar 31 2020 11:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31001 * 119.99930 * 2 1 4 4 C 1.50703 * 119.99540 * 0.27318 * 3 2 1 5 5 C 1.53002 * 109.47211 * 124.72851 * 4 3 2 6 6 H 1.09008 * 109.46751 * 305.00279 * 5 4 3 7 7 C 1.52996 * 109.47682 * 184.99889 * 5 4 3 8 8 O 1.42901 * 109.46732 * 304.99874 * 7 5 4 9 9 N 1.46504 * 109.47382 * 64.99446 * 5 4 3 10 10 C 1.34775 * 120.00384 * 205.00377 * 9 5 4 11 11 O 1.21285 * 119.99633 * 0.02562 * 10 9 5 12 12 C 1.50697 * 120.00174 * 180.02562 * 10 9 5 13 13 C 1.52991 * 109.47313 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47113 * 54.99773 * 13 12 10 15 15 C 1.50696 * 109.47489 * 295.00147 * 13 12 10 16 16 H 1.08008 * 119.99656 * 325.85353 * 15 13 12 17 17 C 1.37877 * 120.00777 * 145.84935 * 15 13 12 18 18 N 1.31516 * 119.99536 * 6.11758 * 17 15 13 19 19 Si 1.86796 * 120.00533 * 186.12220 * 17 15 13 20 20 H 1.48493 * 109.47415 * 89.99524 * 19 17 15 21 21 H 1.48500 * 109.47053 * 210.00258 * 19 17 15 22 22 H 1.48501 * 109.46763 * 329.99551 * 19 17 15 23 23 C 1.50705 * 109.47272 * 174.99960 * 13 12 10 24 24 C 1.38234 * 119.99646 * 63.46133 * 23 13 12 25 25 C 1.38235 * 119.99642 * 179.78697 * 24 23 13 26 26 C 1.38233 * 119.99920 * 0.44092 * 25 24 23 27 27 C 1.38237 * 120.00224 * 359.80870 * 26 25 24 28 28 C 1.38231 * 119.99976 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47679 * 60.00667 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47453 * 299.99987 * 1 2 3 32 32 H 1.07995 * 120.00561 * 179.97438 * 2 1 3 33 33 H 1.08000 * 120.00527 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47184 * 244.72326 * 4 3 2 35 35 H 1.08993 * 109.47750 * 4.72429 * 4 3 2 36 36 H 1.09000 * 109.46842 * 64.99283 * 7 5 4 37 37 H 1.08994 * 109.47400 * 184.99431 * 7 5 4 38 38 H 0.96698 * 113.99763 * 179.97438 * 8 7 5 39 39 H 0.97004 * 119.99621 * 25.00386 * 9 5 4 40 40 H 1.09001 * 109.47199 * 300.00196 * 12 10 9 41 41 H 1.09000 * 109.47109 * 59.99754 * 12 10 9 42 42 H 0.96999 * 119.99808 * 179.97438 * 18 17 15 43 43 H 1.07992 * 120.00179 * 359.97438 * 24 23 13 44 44 H 1.08003 * 120.00162 * 180.26647 * 25 24 23 45 45 H 1.08005 * 120.00114 * 179.82874 * 26 25 24 46 46 H 1.08000 * 120.00084 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00439 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 1.4083 2.4396 0.0062 5 6 1.8698 3.2894 1.1919 6 1 1.7578 2.7183 2.1136 7 6 1.0191 4.5585 1.2716 8 8 1.0738 5.2479 0.0211 9 7 3.2770 3.6552 1.0122 10 6 4.0404 3.9444 2.0846 11 8 3.5625 3.9013 3.1985 12 6 5.4877 4.3212 1.8998 13 6 6.1212 4.5973 3.2647 14 1 5.9765 3.7337 3.9138 15 6 5.4706 5.8066 3.8852 16 1 5.1366 6.6210 3.2593 17 6 5.3015 5.8736 5.2520 18 7 5.8141 4.9407 6.0244 19 14 4.3444 7.2891 6.0066 20 1 2.9081 6.9233 6.0965 21 1 4.8693 7.5722 7.3666 22 1 4.4953 8.4974 5.1565 23 6 7.5962 4.8538 3.0913 24 6 8.0265 5.9473 2.3634 25 6 9.3794 6.1851 2.2081 26 6 10.3018 5.3244 2.7731 27 6 9.8713 4.2280 3.4967 28 6 8.5185 3.9927 3.6558 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.0470 -0.9352 0.0004 33 1 3.2419 1.1346 0.0004 34 1 1.6028 2.9759 -0.9226 35 1 0.3401 2.2420 0.0948 36 1 -0.0137 4.2902 1.4937 37 1 1.4041 5.2051 2.0601 38 1 0.5556 6.0640 -0.0011 39 1 3.6593 3.6893 0.1214 40 1 6.0171 3.5022 1.4128 41 1 5.5540 5.2157 1.2804 42 1 5.6955 4.9880 6.9859 43 1 7.3059 6.6175 1.9186 44 1 9.7158 7.0419 1.6430 45 1 11.3588 5.5086 2.6494 46 1 10.5920 3.5553 3.9377 47 1 8.1822 3.1364 4.2214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356771378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:44 Heat of formation + Delta-G solvation = -59.362115 kcal Electronic energy + Delta-G solvation = -26677.099941 eV Core-core repulsion = 23017.606087 eV Total energy + Delta-G solvation = -3659.493855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.36039 -38.31033 -37.17434 -35.95298 -34.12864 -33.58924 -31.47292 -30.40047 -29.96916 -28.56888 -27.69887 -25.43671 -25.31211 -22.89081 -21.63625 -21.13840 -19.98296 -19.22806 -18.51432 -17.34889 -16.57528 -16.28243 -15.83364 -15.65588 -15.33175 -14.74454 -14.48831 -14.10725 -14.05041 -13.84488 -13.64169 -13.45200 -13.15787 -12.86937 -12.53729 -12.33458 -12.27591 -11.93819 -11.84189 -11.71051 -11.54142 -11.35285 -11.26934 -10.86296 -10.74105 -10.63848 -10.54142 -10.22386 -10.03049 -9.96787 -9.40639 -9.01995 -9.00079 -8.79725 -8.43944 -8.29385 -8.00992 -7.56734 -5.90277 -3.89191 2.19037 2.32404 2.38414 3.39303 3.44762 3.46023 3.61405 3.77348 4.39959 4.54177 4.74650 4.79130 5.02858 5.07334 5.19272 5.35282 5.43513 5.44807 5.51268 5.52413 5.65437 5.69275 5.76440 5.80451 5.84405 5.88627 5.93954 6.09747 6.16124 6.21571 6.27131 6.33870 6.44877 6.58358 6.62536 6.79734 6.86266 6.95415 7.05511 7.09001 7.34464 7.48789 7.57287 7.65268 7.89438 7.98863 8.09114 8.22369 8.43029 9.10490 9.18109 9.72328 11.20104 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003962 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.938401 B = 7066.248114 C = 8304.007261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.173 4.173 3 C -0.151 4.151 4 C -0.098 4.098 5 C 0.158 3.842 6 H 0.096 0.904 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.736 5.736 10 C 0.513 3.487 11 O -0.500 6.500 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.071 0.929 15 C -0.489 4.489 16 H 0.049 0.951 17 C 0.079 3.921 18 N -0.882 5.882 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.374 0.626 39 H 0.394 0.606 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -5.091 -13.350 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.191 4.191 3 C -0.169 4.169 4 C -0.135 4.135 5 C 0.052 3.948 6 H 0.114 0.886 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.391 5.391 10 C 0.300 3.700 11 O -0.372 6.372 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.527 4.527 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.202 1.202 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.220 0.780 39 H 0.227 0.773 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.934 -5.688 -12.427 14.899 hybrid contribution -0.599 1.399 0.409 1.576 sum -6.532 -4.289 -12.018 14.335 Atomic orbital electron populations 1.20849 0.93615 1.01855 1.01798 1.22759 0.96093 0.97865 1.02411 1.22851 0.99924 0.94110 0.99991 1.20963 0.99861 0.93642 0.99040 1.20812 0.81896 0.92888 0.99173 0.88622 1.22715 0.98262 0.94728 0.86093 1.86431 1.74866 1.41093 1.35028 1.46162 1.10051 1.73088 1.09839 1.20903 0.88877 0.76138 0.84083 1.90749 1.74035 1.48429 1.23975 1.21782 0.91569 1.00622 1.02287 1.17828 0.85690 1.00127 0.90234 0.91046 1.20671 1.37848 1.02513 0.91638 0.93248 1.24796 0.94706 0.95559 0.97377 1.69915 1.44030 1.33733 1.04207 0.86714 0.80678 0.82762 0.78463 1.20764 1.21531 1.20165 1.20746 0.98163 0.92031 0.91127 1.20948 0.94508 0.97843 1.00059 1.20972 0.93814 0.99076 1.01141 1.20788 0.98226 0.96826 1.01595 1.20980 0.95851 0.97897 0.99923 1.21086 0.92378 1.00094 1.00160 0.91847 0.92496 0.91657 0.87574 0.87173 0.89829 0.90235 0.93608 0.92406 0.77952 0.77293 0.91804 0.90602 0.93200 0.86931 0.87702 0.87843 0.87677 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.65 36.00 0.31 -0.76 16 2 C -0.17 -1.76 10.26 -36.03 -0.37 -2.13 16 3 C -0.15 -1.67 9.25 -36.02 -0.33 -2.00 16 4 C -0.10 -1.07 4.72 -27.88 -0.13 -1.20 16 5 C 0.16 2.19 2.36 -67.93 -0.16 2.02 16 6 H 0.10 1.52 7.58 -51.92 -0.39 1.12 16 7 C 0.06 0.81 6.85 37.16 0.25 1.06 16 8 O -0.57 -6.80 12.83 -35.23 -0.45 -7.25 16 9 N -0.74 -11.17 4.72 -53.80 -0.25 -11.43 16 10 C 0.51 10.20 7.54 -10.99 -0.08 10.12 16 11 O -0.50 -12.35 14.65 5.55 0.08 -12.27 16 12 C -0.12 -2.39 4.95 -27.89 -0.14 -2.53 16 13 C 0.08 1.93 1.67 -92.93 -0.16 1.77 16 14 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 15 C -0.49 -13.19 6.37 -34.44 -0.22 -13.41 16 16 H 0.05 1.34 7.82 -52.48 -0.41 0.92 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 18 N -0.88 -26.07 12.87 55.43 0.71 -25.35 16 19 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 20 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.37 8.86 -39.58 -0.35 -2.72 16 25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 26 C -0.16 -2.76 10.05 -39.58 -0.40 -3.16 16 27 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 28 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 29 H 0.06 0.50 7.86 -51.93 -0.41 0.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 32 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.11 1.26 8.03 -52.49 -0.42 0.84 16 34 H 0.08 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.08 0.79 5.79 -51.93 -0.30 0.48 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.37 3.01 9.12 45.56 0.42 3.43 16 39 H 0.39 5.07 8.60 -40.82 -0.35 4.72 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.39 7.78 -51.93 -0.40 0.99 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.11 2.23 7.76 -52.49 -0.41 1.83 16 44 H 0.10 1.62 8.06 -52.48 -0.42 1.19 16 45 H 0.10 1.53 8.06 -52.48 -0.42 1.10 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -32.80 391.19 -9.36 -42.17 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.78 Total: 11.21 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.55 Total: -20.28 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.46 Total: -36.78 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.37 Total: -19.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.80 -9.36 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356771378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.196 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds