Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31001 * 119.99930 * 2 1 4 4 C 1.50703 * 119.99540 * 0.27318 * 3 2 1 5 5 C 1.53002 * 109.47211 * 124.72851 * 4 3 2 6 6 H 1.09008 * 109.46751 * 305.00279 * 5 4 3 7 7 C 1.52996 * 109.47682 * 184.99889 * 5 4 3 8 8 O 1.42901 * 109.46732 * 304.99874 * 7 5 4 9 9 N 1.46504 * 109.47382 * 64.99446 * 5 4 3 10 10 C 1.34775 * 120.00384 * 205.00377 * 9 5 4 11 11 O 1.21285 * 119.99633 * 0.02562 * 10 9 5 12 12 C 1.50697 * 120.00174 * 180.02562 * 10 9 5 13 13 C 1.52991 * 109.47313 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47113 * 54.99773 * 13 12 10 15 15 C 1.50696 * 109.47489 * 295.00147 * 13 12 10 16 16 H 1.08008 * 119.99656 * 325.85353 * 15 13 12 17 17 C 1.37877 * 120.00777 * 145.84935 * 15 13 12 18 18 N 1.31516 * 119.99536 * 6.11758 * 17 15 13 19 19 Si 1.86796 * 120.00533 * 186.12220 * 17 15 13 20 20 H 1.48493 * 109.47415 * 89.99524 * 19 17 15 21 21 H 1.48500 * 109.47053 * 210.00258 * 19 17 15 22 22 H 1.48501 * 109.46763 * 329.99551 * 19 17 15 23 23 C 1.50705 * 109.47272 * 174.99960 * 13 12 10 24 24 C 1.38234 * 119.99646 * 63.46133 * 23 13 12 25 25 C 1.38235 * 119.99642 * 179.78697 * 24 23 13 26 26 C 1.38233 * 119.99920 * 0.44092 * 25 24 23 27 27 C 1.38237 * 120.00224 * 359.80870 * 26 25 24 28 28 C 1.38231 * 119.99976 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47679 * 60.00667 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47453 * 299.99987 * 1 2 3 32 32 H 1.07995 * 120.00561 * 179.97438 * 2 1 3 33 33 H 1.08000 * 120.00527 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47184 * 244.72326 * 4 3 2 35 35 H 1.08993 * 109.47750 * 4.72429 * 4 3 2 36 36 H 1.09000 * 109.46842 * 64.99283 * 7 5 4 37 37 H 1.08994 * 109.47400 * 184.99431 * 7 5 4 38 38 H 0.96698 * 113.99763 * 179.97438 * 8 7 5 39 39 H 0.97004 * 119.99621 * 25.00386 * 9 5 4 40 40 H 1.09001 * 109.47199 * 300.00196 * 12 10 9 41 41 H 1.09000 * 109.47109 * 59.99754 * 12 10 9 42 42 H 0.96999 * 119.99808 * 179.97438 * 18 17 15 43 43 H 1.07992 * 120.00179 * 359.97438 * 24 23 13 44 44 H 1.08003 * 120.00162 * 180.26647 * 25 24 23 45 45 H 1.08005 * 120.00114 * 179.82874 * 26 25 24 46 46 H 1.08000 * 120.00084 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00439 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 1.4083 2.4396 0.0062 5 6 1.8698 3.2894 1.1919 6 1 1.7578 2.7183 2.1136 7 6 1.0191 4.5585 1.2716 8 8 1.0738 5.2479 0.0211 9 7 3.2770 3.6552 1.0122 10 6 4.0404 3.9444 2.0846 11 8 3.5625 3.9013 3.1985 12 6 5.4877 4.3212 1.8998 13 6 6.1212 4.5973 3.2647 14 1 5.9765 3.7337 3.9138 15 6 5.4706 5.8066 3.8852 16 1 5.1366 6.6210 3.2593 17 6 5.3015 5.8736 5.2520 18 7 5.8141 4.9407 6.0244 19 14 4.3444 7.2891 6.0066 20 1 2.9081 6.9233 6.0965 21 1 4.8693 7.5722 7.3666 22 1 4.4953 8.4974 5.1565 23 6 7.5962 4.8538 3.0913 24 6 8.0265 5.9473 2.3634 25 6 9.3794 6.1851 2.2081 26 6 10.3018 5.3244 2.7731 27 6 9.8713 4.2280 3.4967 28 6 8.5185 3.9927 3.6558 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.0470 -0.9352 0.0004 33 1 3.2419 1.1346 0.0004 34 1 1.6028 2.9759 -0.9226 35 1 0.3401 2.2420 0.0948 36 1 -0.0137 4.2902 1.4937 37 1 1.4041 5.2051 2.0601 38 1 0.5556 6.0640 -0.0011 39 1 3.6593 3.6893 0.1214 40 1 6.0171 3.5022 1.4128 41 1 5.5540 5.2157 1.2804 42 1 5.6955 4.9880 6.9859 43 1 7.3059 6.6175 1.9186 44 1 9.7158 7.0419 1.6430 45 1 11.3588 5.5086 2.6494 46 1 10.5920 3.5553 3.9377 47 1 8.1822 3.1364 4.2214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356771378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = -80.688807 kcal Electronic energy + Delta-G solvation = -26678.024736 eV Core-core repulsion = 23017.606087 eV Total energy + Delta-G solvation = -3660.418649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83545 -39.81018 -38.41860 -36.85033 -35.81114 -34.96657 -33.42023 -31.67141 -31.48506 -30.02381 -28.62344 -27.36288 -26.19661 -24.61088 -23.15927 -22.40926 -21.42746 -20.86325 -19.41466 -18.51028 -18.38625 -17.85478 -17.17624 -16.94351 -16.45424 -16.35354 -16.04550 -15.67129 -15.47988 -15.14699 -15.02809 -14.49516 -14.22975 -14.19280 -13.97673 -13.90530 -13.66362 -13.51948 -13.23915 -13.03361 -12.86865 -12.67185 -12.52385 -12.45062 -12.37952 -12.24877 -11.82384 -11.69085 -11.59373 -11.30259 -11.01277 -10.94242 -10.59356 -10.29963 -9.94273 -9.72367 -9.53723 -9.18023 -8.03495 -6.05566 0.78399 0.85028 1.34527 1.35001 1.38644 1.43793 2.03008 2.44516 2.46307 3.19465 3.37026 3.42112 3.81593 4.02725 4.20037 4.26125 4.26997 4.35868 4.36604 4.40450 4.43148 4.50285 4.56123 4.58347 4.65823 4.74517 4.79721 4.85120 4.87046 4.93866 5.00391 5.13953 5.15488 5.25887 5.28172 5.38627 5.53823 5.64631 5.73703 5.79691 5.80558 5.84306 5.96307 5.99118 6.18701 6.43082 6.47619 6.85063 6.86696 7.02010 7.56900 7.66496 9.06464 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003962 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.938401 B = 7066.248114 C = 8304.007261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.168 4.168 3 C -0.172 4.172 4 C -0.081 4.081 5 C 0.153 3.847 6 H 0.071 0.929 7 C 0.069 3.931 8 O -0.573 6.573 9 N -0.715 5.715 10 C 0.512 3.488 11 O -0.558 6.558 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.023 0.977 15 C -0.481 4.481 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.934 3.066 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.263 1.263 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.393 0.607 39 H 0.408 0.592 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.253 0.747 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -4.283 -15.968 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C -0.190 4.190 4 C -0.118 4.118 5 C 0.048 3.952 6 H 0.089 0.911 7 C -0.010 4.010 8 O -0.380 6.380 9 N -0.370 5.370 10 C 0.300 3.700 11 O -0.434 6.434 12 C -0.156 4.156 13 C 0.064 3.936 14 H 0.041 0.959 15 C -0.519 4.519 16 H 0.063 0.937 17 C -0.175 4.175 18 N -0.558 5.558 19 Si 0.761 3.239 20 H -0.215 1.215 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.242 0.758 39 H 0.244 0.756 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.150 0.850 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.388 -4.859 -15.123 16.773 hybrid contribution -0.736 1.085 1.096 1.709 sum -6.124 -3.774 -14.027 15.764 Atomic orbital electron populations 1.20903 0.92284 1.02891 1.02223 1.23015 0.97246 0.97758 1.00535 1.22845 0.99679 0.94615 1.01878 1.20838 1.00581 0.92878 0.97511 1.20943 0.80939 0.93717 0.99645 0.91112 1.22499 0.99237 0.93661 0.85608 1.86379 1.75606 1.42231 1.33796 1.45926 1.10560 1.71127 1.09346 1.20977 0.89273 0.75624 0.84143 1.90730 1.75004 1.51386 1.26296 1.21661 0.91503 1.02240 1.00245 1.17605 0.87579 0.96962 0.91405 0.95853 1.20941 1.36615 1.02864 0.91496 0.93713 1.25469 0.96062 0.97686 0.98253 1.70057 1.46178 1.35635 1.03896 0.85933 0.79001 0.80935 0.78018 1.21526 1.21291 1.18772 1.20573 0.96978 0.93716 0.93254 1.21034 0.96081 0.97228 1.00306 1.21370 0.92663 0.99939 1.00444 1.21260 1.00255 0.95418 0.99638 1.21286 0.94869 0.98828 0.99636 1.21100 0.94029 1.00105 1.00999 0.90714 0.91308 0.91767 0.87061 0.88066 0.89255 0.88611 0.90967 0.96185 0.75788 0.75579 0.89389 0.88958 0.93820 0.86776 0.84152 0.83838 0.85037 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.65 71.23 0.62 -1.29 16 2 C -0.17 -3.18 10.26 25.64 0.26 -2.92 16 3 C -0.17 -3.66 9.25 25.65 0.24 -3.43 16 4 C -0.08 -1.65 4.72 29.85 0.14 -1.51 16 5 C 0.15 4.22 2.36 44.99 0.11 4.33 16 6 H 0.07 2.35 7.58 -2.38 -0.02 2.33 16 7 C 0.07 1.80 6.85 71.98 0.49 2.29 16 8 O -0.57 -12.63 12.83 -148.98 -1.91 -14.54 16 9 N -0.72 -21.82 4.72 -442.52 -2.09 -23.91 16 10 C 0.51 21.11 7.54 87.66 0.66 21.77 16 11 O -0.56 -29.22 14.65 -3.05 -0.04 -29.26 16 12 C -0.12 -4.64 4.95 29.84 0.15 -4.49 16 13 C 0.08 4.20 1.67 -12.29 -0.02 4.18 16 14 H 0.02 1.38 6.98 -2.39 -0.02 1.36 16 15 C -0.48 -26.86 6.37 25.60 0.16 -26.69 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.40 5.45 84.65 0.46 1.86 16 18 N -0.92 -57.16 12.87 21.45 0.28 -56.89 16 19 Si 0.93 47.17 29.54 68.60 2.03 49.20 16 20 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 23 C -0.04 -2.03 4.77 -19.86 -0.09 -2.13 16 24 C -0.13 -5.12 8.86 22.27 0.20 -4.92 16 25 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 26 C -0.15 -4.68 10.05 22.27 0.22 -4.45 16 27 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 28 C -0.14 -6.30 9.67 22.27 0.22 -6.09 16 29 H 0.07 0.98 7.86 -2.39 -0.02 0.96 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.00 7.65 -2.39 -0.02 0.99 16 32 H 0.11 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.10 2.30 8.03 -2.91 -0.02 2.28 16 34 H 0.09 1.75 7.73 -2.38 -0.02 1.74 16 35 H 0.10 1.67 5.79 -2.39 -0.01 1.66 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.39 5.51 9.12 -74.06 -0.68 4.84 16 39 H 0.41 10.12 8.60 -92.71 -0.80 9.32 16 40 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.09 3.35 7.78 -2.39 -0.02 3.33 16 42 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.11 4.41 7.76 -2.91 -0.02 4.38 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 45 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 47 H 0.09 4.32 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -75.41 391.19 2.01 -73.40 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.51 Total: 33.80 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.26 Total: -31.80 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.81 Total: -80.80 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.96 Total: -43.80 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.41 2.01 -73.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356771378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.292 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds