Wall clock time and date at job start Tue Mar 31 2020 11:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00753 * 2 1 4 4 O 1.42898 * 109.47513 * 134.99482 * 3 2 1 5 5 C 1.35656 * 117.00079 * 180.02562 * 4 3 2 6 6 C 1.38714 * 120.14915 * 359.97438 * 5 4 3 7 7 C 1.38051 * 120.08468 * 179.97438 * 6 5 4 8 8 C 1.38555 * 120.38906 * 0.02562 * 7 6 5 9 9 C 1.37785 * 120.30047 * 0.02562 * 8 7 6 10 10 C 1.39713 * 119.90793 * 359.97438 * 9 8 7 11 11 C 1.47535 * 120.19038 * 180.02562 * 10 9 8 12 12 O 1.21581 * 119.99746 * 179.97438 * 11 10 9 13 13 N 1.34774 * 119.99732 * 359.97438 * 11 10 9 14 14 C 1.46506 * 119.99862 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47253 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46987 * 300.00067 * 15 14 13 17 17 C 1.52998 * 109.46881 * 59.99882 * 15 14 13 18 18 C 1.53002 * 109.47119 * 179.97438 * 15 14 13 19 19 C 1.50696 * 109.47087 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00026 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99902 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00276 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47145 * 120.00251 * 23 21 19 26 26 H 1.48501 * 109.47471 * 240.00505 * 23 21 19 27 27 H 1.08004 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00731 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99537 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46802 * 14.99831 * 3 2 1 31 31 H 1.09003 * 109.47024 * 255.00292 * 3 2 1 32 32 H 1.07995 * 119.95834 * 0.02706 * 6 5 4 33 33 H 1.07997 * 119.80544 * 180.27727 * 7 6 5 34 34 H 1.07998 * 119.84759 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.04295 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00649 * 0.02562 * 13 11 10 37 37 H 1.09000 * 109.46797 * 299.99981 * 14 13 11 38 38 H 1.09005 * 109.46904 * 59.99644 * 14 13 11 39 39 H 1.08990 * 109.47339 * 60.00214 * 16 15 14 40 40 H 1.09000 * 109.46820 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.47207 * 299.99679 * 16 15 14 42 42 H 1.09000 * 109.47257 * 59.99883 * 17 15 14 43 43 H 1.09000 * 109.47258 * 179.97438 * 17 15 14 44 44 H 1.08999 * 109.47592 * 299.99562 * 17 15 14 45 45 H 1.09000 * 109.47158 * 300.00202 * 18 15 14 46 46 H 1.09005 * 109.46677 * 59.99947 * 18 15 14 47 47 H 0.96993 * 120.00355 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9078 2.3431 1.0787 6 6 3.6595 3.4655 0.3023 7 6 4.4549 4.5864 0.4320 8 6 5.5051 4.5999 1.3357 9 6 5.7666 3.4935 2.1142 10 6 4.9696 2.3524 1.9931 11 6 5.2437 1.1644 2.8240 12 8 4.5476 0.1734 2.7161 13 7 6.2657 1.1778 3.7025 14 6 6.5382 -0.0021 4.5271 15 6 7.7416 0.2742 5.4307 16 6 8.9658 0.5873 4.5681 17 6 7.4361 1.4694 6.3356 18 6 8.0258 -0.9578 6.2924 19 6 9.2115 -0.6859 7.1819 20 1 9.7119 0.2700 7.1375 21 6 9.6566 -1.6573 8.0533 22 7 9.0468 -2.8213 8.1078 23 14 11.1267 -1.3206 9.1554 24 1 11.6302 0.0535 8.9032 25 1 10.7177 -1.4442 10.5777 26 1 12.2008 -2.3033 8.8621 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4866 -0.9927 32 1 2.8425 3.4628 -0.4039 33 1 4.2548 5.4593 -0.1715 34 1 6.1220 5.4813 1.4297 35 1 6.5860 3.5087 2.8175 36 1 6.8208 1.9686 3.7888 37 1 5.6659 -0.2254 5.1413 38 1 6.7562 -0.8535 3.8823 39 1 8.7631 1.4651 3.9547 40 1 9.8232 0.7837 5.2119 41 1 9.1835 -0.2642 3.9234 42 1 6.5639 1.2463 6.9501 43 1 8.2932 1.6660 6.9797 44 1 7.2334 2.3473 5.7222 45 1 7.1535 -1.1805 6.9069 46 1 8.2432 -1.8096 5.6479 47 1 9.3602 -3.5048 8.7205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:31 Heat of formation + Delta-G solvation = -40.342748 kcal Electronic energy + Delta-G solvation = -26149.283846 eV Core-core repulsion = 22490.614734 eV Total energy + Delta-G solvation = -3658.669113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68760 -39.08707 -37.66763 -36.90424 -34.34405 -33.55540 -32.21312 -31.24857 -30.16843 -27.18204 -26.88699 -26.48375 -26.16299 -23.96724 -22.77384 -22.13316 -20.59078 -19.91381 -18.91121 -18.05564 -17.07353 -16.58690 -16.31552 -16.12483 -15.31822 -15.12685 -14.96459 -14.84321 -14.57630 -14.35079 -13.69816 -13.46328 -13.39806 -13.02838 -12.99488 -12.72097 -12.67819 -12.05562 -12.04351 -11.99219 -11.65442 -11.47347 -11.20813 -11.11884 -11.00435 -10.81639 -10.62097 -10.37274 -10.21658 -9.84729 -9.81998 -9.63710 -9.30132 -9.13193 -8.88722 -8.65023 -8.39291 -8.34222 -5.98034 -3.99161 0.70865 1.15498 1.77528 2.97725 3.12077 3.31351 3.39271 3.41407 3.48980 3.80021 4.39784 4.46703 4.49942 4.60974 4.72922 4.80420 4.85763 5.00091 5.11859 5.13329 5.28866 5.37544 5.48582 5.54893 5.61390 5.67165 5.78783 5.91623 5.99882 6.16789 6.20323 6.24679 6.26725 6.28690 6.35527 6.43966 6.45296 6.62638 6.65623 6.82676 7.09257 7.10483 7.16059 7.19801 7.67114 7.79510 7.85329 8.01127 8.42701 8.56755 9.05953 9.63864 11.13505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.002642 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.112923 B =10596.524969 C =11835.064652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C 0.080 3.920 4 O -0.272 6.272 5 C 0.184 3.816 6 C -0.224 4.224 7 C -0.057 4.057 8 C -0.168 4.168 9 C -0.048 4.048 10 C -0.166 4.166 11 C 0.551 3.449 12 O -0.523 6.523 13 N -0.720 5.720 14 C 0.130 3.870 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.035 3.965 19 C -0.509 4.509 20 H 0.060 0.940 21 C 0.055 3.945 22 N -0.894 5.894 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.395 0.605 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 15.392 -18.062 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.167 4.167 3 C 0.005 3.995 4 O -0.183 6.183 5 C 0.136 3.864 6 C -0.242 4.242 7 C -0.075 4.075 8 C -0.186 4.186 9 C -0.066 4.066 10 C -0.170 4.170 11 C 0.337 3.663 12 O -0.400 6.400 13 N -0.373 5.373 14 C 0.007 3.993 15 C -0.073 4.073 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.002 4.002 19 C -0.548 4.548 20 H 0.078 0.922 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.780 14.278 -17.931 26.243 hybrid contribution 1.002 0.621 0.545 1.299 sum -11.778 14.899 -17.387 25.749 Atomic orbital electron populations 1.23840 0.95353 1.02440 0.99629 1.22664 0.95605 0.97936 1.00456 1.21922 0.88201 0.97110 0.92253 1.86430 1.40837 1.34080 1.56975 1.19024 0.89251 0.85946 0.92194 1.21230 1.04424 0.94301 1.04276 1.21092 0.93312 0.97026 0.96108 1.20990 0.99841 0.99051 0.98706 1.21233 0.96953 0.91381 0.97079 1.19524 0.98855 0.96711 1.01877 1.17969 0.81034 0.87065 0.80200 1.90816 1.48012 1.33745 1.67423 1.46107 1.32246 1.18650 1.40299 1.21615 0.98526 0.86498 0.92620 1.20903 0.92283 0.99200 0.94898 1.21762 0.98801 0.99125 0.98751 1.21764 1.02097 0.95642 0.98937 1.19098 0.96957 0.90470 0.93682 1.21220 1.13515 0.99740 1.20296 0.92203 1.25019 0.96938 0.95242 0.97362 1.69975 1.40753 1.04924 1.37742 0.86597 0.82928 0.78198 0.80617 1.19811 1.21158 1.21153 0.88427 0.87401 0.85943 0.91535 0.91050 0.85016 0.85428 0.85246 0.84904 0.76895 0.91793 0.91798 0.95321 0.91416 0.93324 0.93326 0.91418 0.95327 0.96308 0.96314 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 14.31 29.02 0.42 -0.93 16 2 C -0.15 -1.43 9.89 -36.03 -0.36 -1.79 16 3 C 0.08 0.77 5.15 36.00 0.19 0.96 16 4 O -0.27 -3.87 8.19 -40.55 -0.33 -4.20 16 5 C 0.18 2.39 6.70 -38.70 -0.26 2.14 16 6 C -0.22 -2.12 9.03 -39.47 -0.36 -2.48 16 7 C -0.06 -0.46 10.03 -39.53 -0.40 -0.86 16 8 C -0.17 -1.43 10.02 -39.63 -0.40 -1.82 16 9 C -0.05 -0.50 9.54 -39.20 -0.37 -0.87 16 10 C -0.17 -2.28 5.89 -104.85 -0.62 -2.90 16 11 C 0.55 9.35 7.76 -12.47 -0.10 9.25 16 12 O -0.52 -10.86 15.16 -16.58 -0.25 -11.11 16 13 N -0.72 -11.30 4.91 -61.35 -0.30 -11.60 16 14 C 0.13 2.41 4.56 -4.04 -0.02 2.39 16 15 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 16 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 17 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 18 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 19 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 20 H 0.06 1.53 5.68 -52.49 -0.30 1.24 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 23 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H 0.10 0.61 7.90 -52.48 -0.41 0.19 16 28 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.07 0.52 7.38 -51.93 -0.38 0.14 16 31 H 0.07 0.55 7.66 -51.93 -0.40 0.16 16 32 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 1.15 6.40 -52.49 -0.34 0.82 16 36 H 0.39 5.18 4.19 -40.82 -0.17 5.01 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -33.19 380.94 -8.75 -41.94 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.09 Total: 2.76 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.23 Total: -13.94 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.44 Total: -37.46 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.58 Total: -15.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.19 -8.75 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds