Wall clock time and date at job start Tue Mar 31 2020 11:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00753 * 2 1 4 4 O 1.42898 * 109.47513 * 134.99482 * 3 2 1 5 5 C 1.35656 * 117.00079 * 180.02562 * 4 3 2 6 6 C 1.38714 * 120.14915 * 359.97438 * 5 4 3 7 7 C 1.38051 * 120.08468 * 179.97438 * 6 5 4 8 8 C 1.38555 * 120.38906 * 0.02562 * 7 6 5 9 9 C 1.37785 * 120.30047 * 0.02562 * 8 7 6 10 10 C 1.39713 * 119.90793 * 359.97438 * 9 8 7 11 11 C 1.47535 * 120.19038 * 180.02562 * 10 9 8 12 12 O 1.21581 * 119.99746 * 179.97438 * 11 10 9 13 13 N 1.34774 * 119.99732 * 359.97438 * 11 10 9 14 14 C 1.46506 * 119.99862 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47253 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46987 * 300.00067 * 15 14 13 17 17 C 1.52998 * 109.46881 * 59.99882 * 15 14 13 18 18 C 1.53002 * 109.47119 * 179.97438 * 15 14 13 19 19 C 1.50696 * 109.47087 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00026 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99902 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00276 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47145 * 120.00251 * 23 21 19 26 26 H 1.48501 * 109.47471 * 240.00505 * 23 21 19 27 27 H 1.08004 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00731 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99537 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46802 * 14.99831 * 3 2 1 31 31 H 1.09003 * 109.47024 * 255.00292 * 3 2 1 32 32 H 1.07995 * 119.95834 * 0.02706 * 6 5 4 33 33 H 1.07997 * 119.80544 * 180.27727 * 7 6 5 34 34 H 1.07998 * 119.84759 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.04295 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00649 * 0.02562 * 13 11 10 37 37 H 1.09000 * 109.46797 * 299.99981 * 14 13 11 38 38 H 1.09005 * 109.46904 * 59.99644 * 14 13 11 39 39 H 1.08990 * 109.47339 * 60.00214 * 16 15 14 40 40 H 1.09000 * 109.46820 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.47207 * 299.99679 * 16 15 14 42 42 H 1.09000 * 109.47257 * 59.99883 * 17 15 14 43 43 H 1.09000 * 109.47258 * 179.97438 * 17 15 14 44 44 H 1.08999 * 109.47592 * 299.99562 * 17 15 14 45 45 H 1.09000 * 109.47158 * 300.00202 * 18 15 14 46 46 H 1.09005 * 109.46677 * 59.99947 * 18 15 14 47 47 H 0.96993 * 120.00355 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9078 2.3431 1.0787 6 6 3.6595 3.4655 0.3023 7 6 4.4549 4.5864 0.4320 8 6 5.5051 4.5999 1.3357 9 6 5.7666 3.4935 2.1142 10 6 4.9696 2.3524 1.9931 11 6 5.2437 1.1644 2.8240 12 8 4.5476 0.1734 2.7161 13 7 6.2657 1.1778 3.7025 14 6 6.5382 -0.0021 4.5271 15 6 7.7416 0.2742 5.4307 16 6 8.9658 0.5873 4.5681 17 6 7.4361 1.4694 6.3356 18 6 8.0258 -0.9578 6.2924 19 6 9.2115 -0.6859 7.1819 20 1 9.7119 0.2700 7.1375 21 6 9.6566 -1.6573 8.0533 22 7 9.0468 -2.8213 8.1078 23 14 11.1267 -1.3206 9.1554 24 1 11.6302 0.0535 8.9032 25 1 10.7177 -1.4442 10.5777 26 1 12.2008 -2.3033 8.8621 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4866 -0.9927 32 1 2.8425 3.4628 -0.4039 33 1 4.2548 5.4593 -0.1715 34 1 6.1220 5.4813 1.4297 35 1 6.5860 3.5087 2.8175 36 1 6.8208 1.9686 3.7888 37 1 5.6659 -0.2254 5.1413 38 1 6.7562 -0.8535 3.8823 39 1 8.7631 1.4651 3.9547 40 1 9.8232 0.7837 5.2119 41 1 9.1835 -0.2642 3.9234 42 1 6.5639 1.2463 6.9501 43 1 8.2932 1.6660 6.9797 44 1 7.2334 2.3473 5.7222 45 1 7.1535 -1.1805 6.9069 46 1 8.2432 -1.8096 5.6479 47 1 9.3602 -3.5048 8.7205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359761311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:30 Heat of formation + Delta-G solvation = -59.300811 kcal Electronic energy + Delta-G solvation = -26150.105930 eV Core-core repulsion = 22490.614734 eV Total energy + Delta-G solvation = -3659.491196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63078 -40.31413 -38.65261 -38.30603 -35.29493 -34.97636 -34.00744 -32.21071 -30.91662 -29.10792 -27.96329 -27.90035 -27.35753 -25.33626 -24.23681 -22.98307 -21.66608 -20.80960 -20.12178 -19.22629 -18.37588 -18.16936 -17.44510 -17.05155 -16.59662 -16.36395 -16.23479 -16.00424 -15.60846 -15.36586 -15.08172 -14.90288 -14.56535 -14.26501 -14.20226 -13.94405 -13.82079 -13.65541 -13.38304 -12.88581 -12.75283 -12.67552 -12.58980 -12.34905 -12.33957 -12.22164 -12.17860 -11.95081 -11.90538 -11.54369 -11.14292 -10.89155 -10.73987 -10.52016 -10.46562 -10.19267 -9.93793 -9.21726 -8.13474 -6.21526 -0.11656 0.42411 1.10078 1.42500 1.43172 1.55299 1.93189 2.20081 2.39645 2.45701 2.87763 3.21007 3.68553 3.73986 3.89963 3.97047 4.02814 4.07596 4.10308 4.19580 4.22210 4.33640 4.42958 4.49427 4.54798 4.68561 4.71218 4.76099 4.88587 4.92927 4.96043 5.10104 5.12252 5.19028 5.33985 5.39063 5.47183 5.48260 5.49920 5.53088 5.57499 5.57950 5.62645 5.80169 5.80418 5.90154 6.30340 6.41219 6.63227 6.93864 7.29863 7.46296 8.99506 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.002642 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.112923 B =10596.524969 C =11835.064652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.182 4.182 3 C 0.077 3.923 4 O -0.312 6.312 5 C 0.160 3.840 6 C -0.223 4.223 7 C -0.044 4.044 8 C -0.162 4.162 9 C -0.049 4.049 10 C -0.201 4.201 11 C 0.547 3.453 12 O -0.574 6.574 13 N -0.707 5.707 14 C 0.144 3.856 15 C -0.063 4.063 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.039 3.961 19 C -0.511 4.511 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.940 5.940 23 Si 0.960 3.040 24 H -0.255 1.255 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.410 0.590 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.069 0.931 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 20.016 -19.444 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.003 3.997 4 O -0.224 6.224 5 C 0.112 3.888 6 C -0.241 4.241 7 C -0.062 4.062 8 C -0.180 4.180 9 C -0.067 4.067 10 C -0.205 4.205 11 C 0.336 3.664 12 O -0.455 6.455 13 N -0.360 5.360 14 C 0.019 3.981 15 C -0.064 4.064 16 C -0.179 4.179 17 C -0.179 4.179 18 C 0.001 3.999 19 C -0.549 4.549 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.582 5.582 23 Si 0.786 3.214 24 H -0.178 1.178 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.167 0.833 36 H 0.249 0.751 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.249 18.957 -19.325 29.713 hybrid contribution 0.729 -0.787 0.882 1.389 sum -11.519 18.171 -18.444 28.338 Atomic orbital electron populations 1.24085 0.94604 1.03868 0.96696 1.22686 0.96496 0.97549 1.03269 1.22129 0.87737 0.97491 0.92333 1.86381 1.42107 1.35520 1.58431 1.19389 0.89388 0.86845 0.93134 1.21539 1.05295 0.93459 1.03825 1.21621 0.91878 0.97394 0.95311 1.21424 0.99937 0.99161 0.97499 1.21465 0.96713 0.90821 0.97710 1.19431 1.01308 0.96530 1.03226 1.18619 0.80113 0.87691 0.79946 1.90782 1.49742 1.35992 1.68973 1.45844 1.32475 1.18055 1.39671 1.21202 0.97361 0.87282 0.92207 1.20702 0.93443 0.97420 0.94807 1.21700 0.97260 1.00429 0.98523 1.21701 1.01190 0.96136 0.98880 1.18983 0.95341 0.92080 0.93454 1.21614 1.13447 1.00058 1.19750 0.90690 1.25986 1.00129 0.95037 0.99259 1.70139 1.42842 1.06180 1.38992 0.85459 0.78978 0.78795 0.78181 1.17825 1.21099 1.21098 0.86364 0.86504 0.88114 0.89601 0.89480 0.82644 0.81566 0.81898 0.83298 0.75058 0.93911 0.93915 0.91172 0.92171 0.94550 0.94553 0.92175 0.91175 0.99696 0.99705 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 14.31 67.79 0.97 -1.30 16 2 C -0.18 -3.65 9.89 25.65 0.25 -3.39 16 3 C 0.08 1.48 5.15 71.23 0.37 1.84 16 4 O -0.31 -9.21 8.19 -68.80 -0.56 -9.78 16 5 C 0.16 4.09 6.70 22.84 0.15 4.24 16 6 C -0.22 -3.58 9.03 22.34 0.20 -3.38 16 7 C -0.04 -0.50 10.03 22.30 0.22 -0.28 16 8 C -0.16 -2.00 10.02 22.24 0.22 -1.78 16 9 C -0.05 -0.88 9.54 22.52 0.21 -0.66 16 10 C -0.20 -5.43 5.89 -20.01 -0.12 -5.54 16 11 C 0.55 19.18 7.76 86.70 0.67 19.85 16 12 O -0.57 -25.57 15.16 16.95 0.26 -25.31 16 13 N -0.71 -22.18 4.91 -466.26 -2.29 -24.47 16 14 C 0.14 5.58 4.56 86.38 0.39 5.98 16 15 C -0.06 -2.48 0.54 -52.18 -0.03 -2.51 16 16 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 17 C -0.12 -4.19 8.05 71.98 0.58 -3.62 16 18 C 0.04 2.04 4.04 29.85 0.12 2.16 16 19 C -0.51 -27.67 7.65 25.60 0.20 -27.47 16 20 H 0.08 3.77 5.68 -2.91 -0.02 3.76 16 21 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 22 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 23 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 24 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 H 0.12 1.22 7.90 -2.91 -0.02 1.19 16 28 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.10 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.09 1.23 7.38 -2.39 -0.02 1.21 16 31 H 0.09 1.28 7.66 -2.39 -0.02 1.27 16 32 H 0.16 1.64 6.30 -2.91 -0.02 1.62 16 33 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.15 2.04 6.40 -2.91 -0.02 2.02 16 36 H 0.41 9.91 4.19 -92.71 -0.39 9.52 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 40 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 44 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 46 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -78.55 380.94 5.76 -72.79 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.57 Total: 18.03 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 5.47 Total: -19.45 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -2.00 Total: -82.25 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.31 Total: -35.09 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -78.55 5.76 -72.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.492 kcal (2) G-P(sol) polarization free energy of solvation -78.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds