Wall clock time and date at job start Tue Mar 31 2020 11:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46920 * 2 1 4 4 C 1.52994 * 109.47402 * 240.00043 * 2 1 3 5 5 C 1.50697 * 109.47394 * 59.99276 * 4 2 1 6 6 H 1.07999 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00034 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99966 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46582 * 90.00376 * 9 7 5 11 11 H 1.48500 * 109.47355 * 210.00178 * 9 7 5 12 12 H 1.48500 * 109.47209 * 330.00678 * 9 7 5 13 13 C 1.52999 * 109.47246 * 119.99400 * 2 1 3 14 14 N 1.46500 * 109.47236 * 300.00162 * 13 2 1 15 15 C 1.34779 * 119.99838 * 179.97438 * 14 13 2 16 16 O 1.21276 * 120.00189 * 5.12675 * 15 14 13 17 17 C 1.50697 * 119.99856 * 185.12132 * 15 14 13 18 18 H 1.09000 * 109.44260 * 24.46124 * 17 15 14 19 19 C 1.53075 * 109.43970 * 144.37955 * 17 15 14 20 20 C 1.53408 * 108.29228 * 168.22974 * 19 17 15 21 21 O 1.42828 * 108.37905 * 295.26141 * 20 19 17 22 22 C 1.35849 * 117.86665 * 49.12099 * 21 20 19 23 23 C 1.39145 * 118.49306 * 163.00872 * 22 21 20 24 24 C 1.37972 * 120.21094 * 179.79530 * 23 22 21 25 25 C 1.38288 * 119.95881 * 359.97438 * 24 23 22 26 26 C 1.38101 * 119.98431 * 0.07979 * 25 24 23 27 27 C 1.38368 * 121.80698 * 342.94649 * 22 21 20 28 28 H 1.09003 * 109.47644 * 300.00078 * 1 2 3 29 29 H 1.08994 * 109.47436 * 60.00836 * 1 2 3 30 30 H 1.09004 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47130 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46808 * 300.00103 * 3 2 1 33 33 H 1.08999 * 109.47674 * 59.99236 * 3 2 1 34 34 H 1.09000 * 109.47376 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.46862 * 299.99718 * 4 2 1 36 36 H 0.97004 * 119.99464 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47063 * 180.02562 * 13 2 1 38 38 H 1.09004 * 109.46895 * 60.00357 * 13 2 1 39 39 H 0.97002 * 120.00493 * 0.02562 * 14 13 2 40 40 H 1.09009 * 109.69478 * 48.53372 * 19 17 15 41 41 H 1.08999 * 109.73449 * 287.95452 * 19 17 15 42 42 H 1.08998 * 109.68351 * 175.54194 * 20 19 17 43 43 H 1.08994 * 109.68171 * 54.98314 * 20 19 17 44 44 H 1.07996 * 119.89774 * 359.76922 * 23 22 21 45 45 H 1.07999 * 120.01690 * 179.97438 * 24 23 22 46 46 H 1.08005 * 120.00818 * 180.02562 * 25 24 23 47 47 H 1.07998 * 119.84286 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0110 -2.4797 6 1 0.9169 0.8673 -2.3807 7 6 1.8712 -0.4817 -3.7319 8 7 2.6275 -1.5510 -3.8525 9 14 1.2478 0.3983 -5.2572 10 1 2.2252 1.4408 -5.6613 11 1 1.0837 -0.5810 -6.3614 12 1 -0.0608 1.0347 -4.9614 13 6 2.0400 -0.7211 1.2493 14 7 1.5517 -0.0304 2.4454 15 6 1.8769 -0.4911 3.6696 16 8 2.6482 -1.4201 3.7827 17 6 1.2822 0.1483 4.8978 18 1 0.3388 0.6278 4.6365 19 6 1.0309 -0.9250 5.9599 20 6 0.7105 -0.2240 7.2863 21 8 1.8685 0.5001 7.7042 22 6 2.4765 1.3052 6.7945 23 6 3.3621 2.2753 7.2536 24 6 4.0024 3.1094 6.3604 25 6 3.7647 2.9816 5.0041 26 6 2.8855 2.0207 4.5449 27 6 2.2380 1.1821 5.4371 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2491 36 1 2.8618 -1.8823 -4.7335 37 1 3.1300 -0.7207 1.2495 38 1 1.6767 -1.7488 1.2493 39 1 0.9936 0.7580 2.3564 40 1 1.9218 -1.5423 6.0763 41 1 0.1884 -1.5486 5.6609 42 1 0.4500 -0.9667 8.0404 43 1 -0.1223 0.4649 7.1456 44 1 3.5485 2.3760 8.3126 45 1 4.6889 3.8615 6.7202 46 1 4.2658 3.6339 4.3041 47 1 2.7013 1.9232 3.4853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367924690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:50 Heat of formation + Delta-G solvation = -90.784766 kcal Electronic energy + Delta-G solvation = -26894.301072 eV Core-core repulsion = 23233.444629 eV Total energy + Delta-G solvation = -3660.856443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11840 -40.56464 -38.69835 -38.44755 -35.37294 -35.18944 -33.88837 -31.62587 -31.19781 -29.22495 -28.32594 -27.96878 -26.77984 -25.00816 -24.54399 -23.54156 -21.88993 -20.87958 -19.84466 -18.94921 -18.38057 -18.05911 -17.69932 -17.16128 -16.82685 -16.44171 -16.17397 -15.91119 -15.30797 -15.27394 -15.02242 -14.76746 -14.65578 -14.42290 -14.22356 -14.16242 -13.94286 -13.74502 -13.40128 -12.93415 -12.87703 -12.72273 -12.60184 -12.49579 -12.34139 -12.23368 -12.07203 -11.98217 -11.83790 -11.64150 -11.54290 -11.19544 -10.91204 -10.77901 -10.51784 -10.12315 -9.80322 -9.15319 -8.14402 -6.22290 0.27366 0.43398 1.42589 1.42826 1.52085 1.53188 2.09820 2.36792 2.44639 2.78183 3.20284 3.42108 3.56747 3.67548 3.83957 3.96448 4.06563 4.09858 4.13142 4.20474 4.22039 4.37426 4.50370 4.51215 4.53102 4.65500 4.68015 4.70811 4.77588 4.90402 4.95070 5.00562 5.06692 5.10677 5.12217 5.29594 5.36833 5.43064 5.45134 5.49983 5.53140 5.56378 5.56911 5.79623 5.82664 5.89590 6.29546 6.44600 6.51011 6.93159 7.18025 7.45721 8.98167 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.002807 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.102117 B = 9971.514854 C =10586.832889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.141 3.859 14 N -0.706 5.706 15 C 0.521 3.479 16 O -0.582 6.582 17 C -0.057 4.057 18 H 0.132 0.868 19 C -0.147 4.147 20 C 0.064 3.936 21 O -0.329 6.329 22 C 0.125 3.875 23 C -0.160 4.160 24 C -0.082 4.082 25 C -0.157 4.157 26 C -0.098 4.098 27 C -0.165 4.165 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.070 0.930 34 H -0.016 1.016 35 H -0.014 1.014 36 H 0.259 0.741 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.413 0.587 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.146 0.854 45 H 0.158 0.842 46 H 0.142 0.858 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 10.590 23.750 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.017 3.983 14 N -0.358 5.358 15 C 0.308 3.692 16 O -0.462 6.462 17 C -0.078 4.078 18 H 0.150 0.850 19 C -0.185 4.185 20 C -0.011 4.011 21 O -0.244 6.244 22 C 0.080 3.920 23 C -0.179 4.179 24 C -0.100 4.100 25 C -0.175 4.175 26 C -0.117 4.117 27 C -0.167 4.167 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.002 0.998 35 H 0.004 0.996 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.252 0.748 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.164 0.836 45 H 0.175 0.825 46 H 0.159 0.841 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.130 9.776 23.881 26.310 hybrid contribution -0.032 -0.143 -1.752 1.758 sum -5.162 9.633 22.129 24.681 Atomic orbital electron populations 1.21696 0.93390 1.01064 1.01730 1.20703 0.96832 0.96262 0.92649 1.21702 0.99886 0.94625 1.01704 1.18963 0.94168 0.94203 0.92390 1.21594 1.30395 1.12062 0.91021 0.90827 1.25953 0.95683 0.95842 1.02751 1.70128 1.38849 1.25002 1.24080 0.85549 0.79231 0.78102 0.78786 1.20199 1.21650 1.18216 1.21229 0.97723 0.95419 0.83924 1.46080 1.53141 1.31916 1.04697 1.20803 0.80619 0.82713 0.85081 1.90684 1.36782 1.31520 1.87221 1.20223 0.99364 0.95510 0.92716 0.85038 1.22173 1.04192 0.97345 0.94750 1.23246 0.85615 0.95701 0.96500 1.85964 1.43415 1.56924 1.38049 1.18868 0.94622 0.91179 0.87333 1.20907 0.99566 0.95665 1.01720 1.21317 0.97954 0.98189 0.92496 1.21329 0.99700 0.99778 0.96732 1.21187 0.96197 0.94857 0.99416 1.19475 1.04023 1.00218 0.92940 0.91026 0.92559 0.94323 0.94512 0.92455 0.91161 0.99783 0.99606 0.93199 0.93898 0.93411 0.74818 0.91822 0.87461 0.84667 0.89447 0.83643 0.82489 0.84054 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 3 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.13 7.65 25.60 0.20 -26.94 16 6 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 8 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 9 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 C 0.14 4.94 4.57 86.38 0.39 5.34 16 14 N -0.71 -18.70 4.25 -463.06 -1.97 -20.67 16 15 C 0.52 14.90 5.79 87.66 0.51 15.40 16 16 O -0.58 -22.45 16.07 -3.02 -0.05 -22.49 16 17 C -0.06 -1.18 2.70 -12.24 -0.03 -1.21 16 18 H 0.13 1.84 8.13 -2.39 -0.02 1.82 16 19 C -0.15 -2.72 5.35 30.76 0.16 -2.56 16 20 C 0.06 0.88 7.03 72.12 0.51 1.39 16 21 O -0.33 -6.78 10.27 -91.85 -0.94 -7.72 16 22 C 0.13 2.77 6.47 22.52 0.15 2.92 16 23 C -0.16 -3.04 9.94 22.42 0.22 -2.82 16 24 C -0.08 -1.37 10.04 22.22 0.22 -1.15 16 25 C -0.16 -3.00 10.04 22.25 0.22 -2.78 16 26 C -0.10 -2.19 9.10 22.30 0.20 -1.98 16 27 C -0.17 -3.74 5.43 -19.75 -0.11 -3.84 16 28 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 29 H 0.06 1.95 6.62 -2.39 -0.02 1.93 16 30 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 33 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 34 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.41 8.33 6.11 -92.71 -0.57 7.77 16 40 H 0.06 1.60 7.46 -2.38 -0.02 1.59 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.14 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 47 H 0.12 2.70 6.76 -2.91 -0.02 2.68 16 Total: -1.00 -72.97 371.82 4.11 -68.85 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.40 Total: 18.52 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.36 Total: -24.99 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -1.68 Total: -77.40 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.99 Total: -30.22 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.97 4.11 -68.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367924690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.933 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds