Wall clock time and date at job start Tue Mar 31 2020 11:34:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52996 * 109.47417 * 2 1
4 4 C 1.52996 * 109.47254 * 239.99547 * 2 1 3
5 5 C 1.50707 * 109.46550 * 60.00306 * 4 2 1
6 6 H 1.07993 * 120.00442 * 0.02562 * 5 4 2
7 7 C 1.37881 * 119.99297 * 179.97438 * 5 4 2
8 8 N 1.31507 * 120.00583 * 0.02562 * 7 5 4
9 9 Si 1.86807 * 119.99638 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.46854 * 0.02562 * 9 7 5
11 11 H 1.48497 * 109.47236 * 120.00078 * 9 7 5
12 12 H 1.48496 * 109.47067 * 240.00526 * 9 7 5
13 13 C 1.53002 * 109.46935 * 120.00151 * 2 1 3
14 14 N 1.46502 * 109.46881 * 299.99748 * 13 2 1
15 15 C 1.34780 * 120.00195 * 179.97438 * 14 13 2
16 16 O 1.21289 * 119.99335 * 0.02562 * 15 14 13
17 17 C 1.50691 * 120.00341 * 180.02562 * 15 14 13
18 18 H 1.09004 * 109.69566 * 60.56024 * 17 15 14
19 19 C 1.53411 * 109.69851 * 299.99923 * 17 15 14
20 20 O 1.42831 * 108.38102 * 175.58150 * 19 17 15
21 21 C 1.35841 * 117.86097 * 49.16716 * 20 19 17
22 22 C 1.39148 * 118.49783 * 163.00805 * 21 20 19
23 23 C 1.37967 * 120.21389 * 180.02562 * 22 21 20
24 24 C 1.38293 * 119.95919 * 359.35852 * 23 22 21
25 25 C 1.38104 * 119.97918 * 0.66851 * 24 23 22
26 26 C 1.38372 * 121.80622 * 342.81137 * 21 20 19
27 27 C 1.50766 * 121.40811 * 0.46396 * 26 21 20
28 28 H 1.09002 * 109.47150 * 300.00113 * 1 2 3
29 29 H 1.09008 * 109.46982 * 59.99844 * 1 2 3
30 30 H 1.08998 * 109.47273 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47280 * 179.97438 * 3 2 1
32 32 H 1.08994 * 109.46973 * 300.00121 * 3 2 1
33 33 H 1.09002 * 109.47053 * 59.99828 * 3 2 1
34 34 H 1.09002 * 109.47499 * 180.02562 * 4 2 1
35 35 H 1.09003 * 109.47227 * 300.00878 * 4 2 1
36 36 H 0.97003 * 120.00408 * 179.97438 * 8 7 5
37 37 H 1.08991 * 109.47334 * 179.97438 * 13 2 1
38 38 H 1.09002 * 109.47374 * 59.99181 * 13 2 1
39 39 H 0.97004 * 120.00336 * 0.02562 * 14 13 2
40 40 H 1.09006 * 109.68215 * 55.86010 * 19 17 15
41 41 H 1.08998 * 109.71464 * 295.32266 * 19 17 15
42 42 H 1.08002 * 119.88847 * 359.75363 * 22 21 20
43 43 H 1.08007 * 120.01799 * 179.65936 * 23 22 21
44 44 H 1.07996 * 120.00724 * 180.35000 * 24 23 22
45 45 H 1.07998 * 119.84151 * 179.73537 * 25 24 23
46 46 H 1.09000 * 109.44140 * 222.12017 * 27 26 21
47 47 H 1.09000 * 109.43661 * 102.24341 * 27 26 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 1.5377 -0.0108 -2.4796
6 1 0.9172 0.8675 -2.3806
7 6 1.8713 -0.4817 -3.7319
8 7 2.6273 -1.5510 -3.8525
9 14 1.2492 0.3993 -5.2572
10 1 0.4247 1.5663 -4.8530
11 1 2.4045 0.8661 -6.0650
12 1 0.4244 -0.5338 -6.0660
13 6 2.0400 -0.7213 1.2493
14 7 1.5516 -0.0306 2.4454
15 6 1.8767 -0.4914 3.6696
16 8 2.5740 -1.4775 3.7808
17 6 1.3739 0.2187 4.9000
18 1 0.2840 0.2122 4.9083
19 6 1.8825 1.6661 4.9058
20 8 1.3072 2.3410 6.0254
21 6 1.3786 1.7334 7.2383
22 6 1.1606 2.5001 8.3788
23 6 1.2250 1.9193 9.6286
24 6 1.4940 0.5681 9.7492
25 6 1.7115 -0.1957 8.6194
26 6 1.6562 0.3835 7.3625
27 6 1.9046 -0.4820 6.1532
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 3.1301 1.4424 0.0005
32 1 1.6767 1.9562 -0.8899
33 1 1.6767 1.9563 0.8900
34 1 3.1300 -0.7217 -1.2489
35 1 1.6766 -1.7490 -1.2492
36 1 2.8617 -1.8824 -4.7335
37 1 3.1299 -0.7217 1.2491
38 1 1.6765 -1.7489 1.2493
39 1 0.9937 0.7579 2.3564
40 1 1.5832 2.1641 3.9835
41 1 2.9691 1.6737 4.9912
42 1 0.9445 3.5541 8.2856
43 1 1.0606 2.5185 10.5120
44 1 1.5390 0.1115 10.7268
45 1 1.9256 -1.2498 8.7163
46 1 1.3933 -1.4364 6.2790
47 1 2.9752 -0.6562 6.0456
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000376565965.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:34:32
Heat of formation + Delta-G solvation = -75.107452 kcal
Electronic energy + Delta-G solvation = -26291.338869 eV
Core-core repulsion = 22631.162246 eV
Total energy + Delta-G solvation = -3660.176624 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.19715 -39.60178 -37.74169 -37.21490 -34.39679 -33.74369 -32.19089 -31.00253
-30.50854 -27.22562 -26.57557 -26.55235 -25.91387 -24.45870 -22.94622 -22.69148
-20.98057 -19.86742 -18.44061 -18.13780 -17.34329 -16.68751 -16.36605 -15.90622
-15.55398 -15.38008 -14.94161 -14.56046 -14.51385 -14.20166 -13.98294 -13.60188
-13.57911 -13.25875 -13.17208 -13.11540 -12.79964 -12.19640 -12.11008 -12.04322
-11.76267 -11.42471 -11.22158 -11.14783 -11.06483 -10.88362 -10.85677 -10.69520
-10.46188 -10.28581 -9.93836 -9.88516 -9.22446 -9.07170 -8.95954 -8.85274
-8.44473 -8.39754 -6.03467 -4.04913 1.02554 1.13748 2.58175 2.93157
3.24327 3.27812 3.36215 3.38411 3.48452 4.19898 4.32823 4.41925
4.46925 4.54772 4.72544 4.79118 4.92809 5.03719 5.14430 5.19259
5.26793 5.32087 5.38038 5.47165 5.55522 5.65019 5.68100 5.68629
5.82541 5.99429 6.09849 6.15209 6.18057 6.21260 6.24731 6.32028
6.46262 6.47469 6.57476 6.67515 7.00266 7.01935 7.06687 7.13141
7.57688 7.60705 7.71282 7.94969 8.24844 8.36812 9.00065 9.58521
11.07928
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.036527 B = 0.002283 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 766.369532 B =12259.942767 C =12751.442580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.073 4.073
3 C -0.128 4.128
4 C 0.036 3.964
5 C -0.511 4.511
6 H 0.060 0.940
7 C 0.055 3.945
8 N -0.894 5.894
9 Si 0.889 3.111
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.285 1.285
13 C 0.127 3.873
14 N -0.719 5.719
15 C 0.516 3.484
16 O -0.537 6.537
17 C -0.148 4.148
18 H 0.111 0.889
19 C 0.073 3.927
20 O -0.310 6.310
21 C 0.127 3.873
22 C -0.148 4.148
23 C -0.091 4.091
24 C -0.152 4.152
25 C -0.084 4.084
26 C -0.154 4.154
27 C -0.059 4.059
28 H 0.028 0.972
29 H 0.068 0.932
30 H 0.048 0.952
31 H 0.048 0.952
32 H 0.068 0.932
33 H 0.028 0.972
34 H 0.018 0.982
35 H 0.018 0.982
36 H 0.260 0.740
37 H 0.065 0.935
38 H 0.065 0.935
39 H 0.399 0.601
40 H 0.114 0.886
41 H 0.073 0.927
42 H 0.130 0.870
43 H 0.127 0.873
44 H 0.123 0.877
45 H 0.126 0.874
46 H 0.089 0.911
47 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.570 7.069 24.745 25.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.073 4.073
3 C -0.185 4.185
4 C -0.002 4.002
5 C -0.549 4.549
6 H 0.078 0.922
7 C -0.146 4.146
8 N -0.533 5.533
9 Si 0.717 3.283
10 H -0.198 1.198
11 H -0.211 1.211
12 H -0.211 1.211
13 C 0.004 3.996
14 N -0.370 5.370
15 C 0.301 3.699
16 O -0.414 6.414
17 C -0.169 4.169
18 H 0.129 0.871
19 C -0.003 4.003
20 O -0.224 6.224
21 C 0.082 3.918
22 C -0.166 4.166
23 C -0.109 4.109
24 C -0.170 4.170
25 C -0.102 4.102
26 C -0.155 4.155
27 C -0.097 4.097
28 H 0.047 0.953
29 H 0.087 0.913
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.087 0.913
33 H 0.047 0.953
34 H 0.037 0.963
35 H 0.037 0.963
36 H 0.069 0.931
37 H 0.084 0.916
38 H 0.083 0.917
39 H 0.234 0.766
40 H 0.132 0.868
41 H 0.091 0.909
42 H 0.148 0.852
43 H 0.145 0.855
44 H 0.141 0.859
45 H 0.144 0.856
46 H 0.107 0.893
47 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -3.062 6.420 24.609 25.616
hybrid contribution -0.504 0.500 -1.108 1.316
sum -3.566 6.920 23.501 24.757
Atomic orbital electron populations
1.21772 0.95238 1.01211 1.00291 1.20910 0.95495 0.95866 0.95025
1.21769 1.00575 0.95856 1.00281 1.19097 0.96367 0.95237 0.89479
1.21209 1.31173 1.12072 0.90475 0.92184 1.25024 0.95307 0.95091
0.99142 1.69969 1.36944 1.23037 1.23378 0.86586 0.78608 0.79675
0.83415 1.19793 1.21127 1.21127 1.21677 0.99000 0.96095 0.82790
1.46261 1.52981 1.31908 1.05887 1.20109 0.80700 0.84820 0.84315
1.90718 1.37792 1.26242 1.86685 1.22026 1.03387 0.96647 0.94886
0.87114 1.22949 0.98449 0.90620 0.88247 1.86028 1.75512 1.46512
1.14344 1.18746 0.97267 0.90539 0.85213 1.20603 1.05677 1.00152
0.90200 1.20932 0.98434 0.95044 0.96523 1.21033 1.03193 0.94273
0.98529 1.20926 0.98084 1.00011 0.91144 1.19902 1.06486 0.92986
0.96158 1.20306 1.03149 0.97532 0.88666 0.95271 0.91337 0.93328
0.93300 0.91319 0.95322 0.96328 0.96338 0.93066 0.91642 0.91678
0.76586 0.86838 0.90855 0.85217 0.85477 0.85871 0.85644 0.89293
0.89077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16
2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16
3 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16
4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16
5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.57 16
6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16
7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16
8 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16
9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16
10 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16
11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
13 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16
14 N -0.72 -9.52 4.84 -60.29 -0.29 -9.81 16
15 C 0.52 7.00 7.16 -10.99 -0.08 6.92 16
16 O -0.54 -9.37 15.80 5.55 0.09 -9.28 16
17 C -0.15 -1.54 2.76 -91.52 -0.25 -1.79 16
18 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16
19 C 0.07 0.69 6.25 37.37 0.23 0.93 16
20 O -0.31 -3.34 10.27 -19.24 -0.20 -3.54 16
21 C 0.13 1.36 6.47 -39.19 -0.25 1.11 16
22 C -0.15 -1.37 9.94 -39.34 -0.39 -1.76 16
23 C -0.09 -0.72 10.04 -39.66 -0.40 -1.11 16
24 C -0.15 -1.20 10.04 -39.61 -0.40 -1.60 16
25 C -0.08 -0.75 9.67 -39.53 -0.38 -1.13 16
26 C -0.15 -1.59 5.75 -104.44 -0.60 -2.19 16
27 C -0.06 -0.63 4.66 -27.81 -0.13 -0.76 16
28 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16
29 H 0.07 1.25 6.62 -51.92 -0.34 0.91 16
30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
32 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16
33 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16
34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16
39 H 0.40 4.39 5.56 -40.82 -0.23 4.16 16
40 H 0.11 0.88 7.50 -51.93 -0.39 0.50 16
41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16
43 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16
44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16
45 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16
46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
47 H 0.09 1.05 7.71 -51.93 -0.40 0.65 16
LS Contribution 373.36 15.07 5.63 5.63
Total: -1.00 -30.97 373.36 -9.03 -40.00
By element:
Atomic # 1 Polarization: 9.55 SS G_CDS: -7.35 Total: 2.20 kcal
Atomic # 6 Polarization: -13.13 SS G_CDS: -2.63 Total: -15.76 kcal
Atomic # 7 Polarization: -35.62 SS G_CDS: 0.44 Total: -35.18 kcal
Atomic # 8 Polarization: -12.71 SS G_CDS: -0.11 Total: -12.82 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -30.97 -9.03 -40.00 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000376565965.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.107 kcal
(2) G-P(sol) polarization free energy of solvation -30.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.075 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.107 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds