Wall clock time and date at job start Tue Mar 31 2020 11:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47417 * 2 1 4 4 C 1.52996 * 109.47254 * 239.99547 * 2 1 3 5 5 C 1.50707 * 109.46550 * 60.00306 * 4 2 1 6 6 H 1.07993 * 120.00442 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99297 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00583 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46854 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47236 * 120.00078 * 9 7 5 12 12 H 1.48496 * 109.47067 * 240.00526 * 9 7 5 13 13 C 1.53002 * 109.46935 * 120.00151 * 2 1 3 14 14 N 1.46502 * 109.46881 * 299.99748 * 13 2 1 15 15 C 1.34780 * 120.00195 * 179.97438 * 14 13 2 16 16 O 1.21289 * 119.99335 * 0.02562 * 15 14 13 17 17 C 1.50691 * 120.00341 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.69566 * 60.56024 * 17 15 14 19 19 C 1.53411 * 109.69851 * 299.99923 * 17 15 14 20 20 O 1.42831 * 108.38102 * 175.58150 * 19 17 15 21 21 C 1.35841 * 117.86097 * 49.16716 * 20 19 17 22 22 C 1.39148 * 118.49783 * 163.00805 * 21 20 19 23 23 C 1.37967 * 120.21389 * 180.02562 * 22 21 20 24 24 C 1.38293 * 119.95919 * 359.35852 * 23 22 21 25 25 C 1.38104 * 119.97918 * 0.66851 * 24 23 22 26 26 C 1.38372 * 121.80622 * 342.81137 * 21 20 19 27 27 C 1.50766 * 121.40811 * 0.46396 * 26 21 20 28 28 H 1.09002 * 109.47150 * 300.00113 * 1 2 3 29 29 H 1.09008 * 109.46982 * 59.99844 * 1 2 3 30 30 H 1.08998 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46973 * 300.00121 * 3 2 1 33 33 H 1.09002 * 109.47053 * 59.99828 * 3 2 1 34 34 H 1.09002 * 109.47499 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.47227 * 300.00878 * 4 2 1 36 36 H 0.97003 * 120.00408 * 179.97438 * 8 7 5 37 37 H 1.08991 * 109.47334 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47374 * 59.99181 * 13 2 1 39 39 H 0.97004 * 120.00336 * 0.02562 * 14 13 2 40 40 H 1.09006 * 109.68215 * 55.86010 * 19 17 15 41 41 H 1.08998 * 109.71464 * 295.32266 * 19 17 15 42 42 H 1.08002 * 119.88847 * 359.75363 * 22 21 20 43 43 H 1.08007 * 120.01799 * 179.65936 * 23 22 21 44 44 H 1.07996 * 120.00724 * 180.35000 * 24 23 22 45 45 H 1.07998 * 119.84151 * 179.73537 * 25 24 23 46 46 H 1.09000 * 109.44140 * 222.12017 * 27 26 21 47 47 H 1.09000 * 109.43661 * 102.24341 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0108 -2.4796 6 1 0.9172 0.8675 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 0.4247 1.5663 -4.8530 11 1 2.4045 0.8661 -6.0650 12 1 0.4244 -0.5338 -6.0660 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8767 -0.4914 3.6696 16 8 2.5740 -1.4775 3.7808 17 6 1.3739 0.2187 4.9000 18 1 0.2840 0.2122 4.9083 19 6 1.8825 1.6661 4.9058 20 8 1.3072 2.3410 6.0254 21 6 1.3786 1.7334 7.2383 22 6 1.1606 2.5001 8.3788 23 6 1.2250 1.9193 9.6286 24 6 1.4940 0.5681 9.7492 25 6 1.7115 -0.1957 8.6194 26 6 1.6562 0.3835 7.3625 27 6 1.9046 -0.4820 6.1532 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2492 36 1 2.8617 -1.8824 -4.7335 37 1 3.1299 -0.7217 1.2491 38 1 1.6765 -1.7489 1.2493 39 1 0.9937 0.7579 2.3564 40 1 1.5832 2.1641 3.9835 41 1 2.9691 1.6737 4.9912 42 1 0.9445 3.5541 8.2856 43 1 1.0606 2.5185 10.5120 44 1 1.5390 0.1115 10.7268 45 1 1.9256 -1.2498 8.7163 46 1 1.3933 -1.4364 6.2790 47 1 2.9752 -0.6562 6.0456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376565965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:32 Heat of formation + Delta-G solvation = -75.107452 kcal Electronic energy + Delta-G solvation = -26291.338869 eV Core-core repulsion = 22631.162246 eV Total energy + Delta-G solvation = -3660.176624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19715 -39.60178 -37.74169 -37.21490 -34.39679 -33.74369 -32.19089 -31.00253 -30.50854 -27.22562 -26.57557 -26.55235 -25.91387 -24.45870 -22.94622 -22.69148 -20.98057 -19.86742 -18.44061 -18.13780 -17.34329 -16.68751 -16.36605 -15.90622 -15.55398 -15.38008 -14.94161 -14.56046 -14.51385 -14.20166 -13.98294 -13.60188 -13.57911 -13.25875 -13.17208 -13.11540 -12.79964 -12.19640 -12.11008 -12.04322 -11.76267 -11.42471 -11.22158 -11.14783 -11.06483 -10.88362 -10.85677 -10.69520 -10.46188 -10.28581 -9.93836 -9.88516 -9.22446 -9.07170 -8.95954 -8.85274 -8.44473 -8.39754 -6.03467 -4.04913 1.02554 1.13748 2.58175 2.93157 3.24327 3.27812 3.36215 3.38411 3.48452 4.19898 4.32823 4.41925 4.46925 4.54772 4.72544 4.79118 4.92809 5.03719 5.14430 5.19259 5.26793 5.32087 5.38038 5.47165 5.55522 5.65019 5.68100 5.68629 5.82541 5.99429 6.09849 6.15209 6.18057 6.21260 6.24731 6.32028 6.46262 6.47469 6.57476 6.67515 7.00266 7.01935 7.06687 7.13141 7.57688 7.60705 7.71282 7.94969 8.24844 8.36812 9.00065 9.58521 11.07928 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.002283 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.369532 B =12259.942767 C =12751.442580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.719 5.719 15 C 0.516 3.484 16 O -0.537 6.537 17 C -0.148 4.148 18 H 0.111 0.889 19 C 0.073 3.927 20 O -0.310 6.310 21 C 0.127 3.873 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.154 4.154 27 C -0.059 4.059 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.089 0.911 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 7.069 24.745 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.370 5.370 15 C 0.301 3.699 16 O -0.414 6.414 17 C -0.169 4.169 18 H 0.129 0.871 19 C -0.003 4.003 20 O -0.224 6.224 21 C 0.082 3.918 22 C -0.166 4.166 23 C -0.109 4.109 24 C -0.170 4.170 25 C -0.102 4.102 26 C -0.155 4.155 27 C -0.097 4.097 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.234 0.766 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.107 0.893 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.062 6.420 24.609 25.616 hybrid contribution -0.504 0.500 -1.108 1.316 sum -3.566 6.920 23.501 24.757 Atomic orbital electron populations 1.21772 0.95238 1.01211 1.00291 1.20910 0.95495 0.95866 0.95025 1.21769 1.00575 0.95856 1.00281 1.19097 0.96367 0.95237 0.89479 1.21209 1.31173 1.12072 0.90475 0.92184 1.25024 0.95307 0.95091 0.99142 1.69969 1.36944 1.23037 1.23378 0.86586 0.78608 0.79675 0.83415 1.19793 1.21127 1.21127 1.21677 0.99000 0.96095 0.82790 1.46261 1.52981 1.31908 1.05887 1.20109 0.80700 0.84820 0.84315 1.90718 1.37792 1.26242 1.86685 1.22026 1.03387 0.96647 0.94886 0.87114 1.22949 0.98449 0.90620 0.88247 1.86028 1.75512 1.46512 1.14344 1.18746 0.97267 0.90539 0.85213 1.20603 1.05677 1.00152 0.90200 1.20932 0.98434 0.95044 0.96523 1.21033 1.03193 0.94273 0.98529 1.20926 0.98084 1.00011 0.91144 1.19902 1.06486 0.92986 0.96158 1.20306 1.03149 0.97532 0.88666 0.95271 0.91337 0.93328 0.93300 0.91319 0.95322 0.96328 0.96338 0.93066 0.91642 0.91678 0.76586 0.86838 0.90855 0.85217 0.85477 0.85871 0.85644 0.89293 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.57 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 14 N -0.72 -9.52 4.84 -60.29 -0.29 -9.81 16 15 C 0.52 7.00 7.16 -10.99 -0.08 6.92 16 16 O -0.54 -9.37 15.80 5.55 0.09 -9.28 16 17 C -0.15 -1.54 2.76 -91.52 -0.25 -1.79 16 18 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 19 C 0.07 0.69 6.25 37.37 0.23 0.93 16 20 O -0.31 -3.34 10.27 -19.24 -0.20 -3.54 16 21 C 0.13 1.36 6.47 -39.19 -0.25 1.11 16 22 C -0.15 -1.37 9.94 -39.34 -0.39 -1.76 16 23 C -0.09 -0.72 10.04 -39.66 -0.40 -1.11 16 24 C -0.15 -1.20 10.04 -39.61 -0.40 -1.60 16 25 C -0.08 -0.75 9.67 -39.53 -0.38 -1.13 16 26 C -0.15 -1.59 5.75 -104.44 -0.60 -2.19 16 27 C -0.06 -0.63 4.66 -27.81 -0.13 -0.76 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 29 H 0.07 1.25 6.62 -51.92 -0.34 0.91 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 33 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.40 4.39 5.56 -40.82 -0.23 4.16 16 40 H 0.11 0.88 7.50 -51.93 -0.39 0.50 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.05 7.71 -51.93 -0.40 0.65 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.97 373.36 -9.03 -40.00 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.35 Total: 2.20 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -2.63 Total: -15.76 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.44 Total: -35.18 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.11 Total: -12.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.97 -9.03 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376565965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.107 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds