Wall clock time and date at job start Tue Mar 31 2020 11:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47417 * 2 1 4 4 C 1.52996 * 109.47254 * 239.99547 * 2 1 3 5 5 C 1.50707 * 109.46550 * 60.00306 * 4 2 1 6 6 H 1.07993 * 120.00442 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99297 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00583 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46854 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47236 * 120.00078 * 9 7 5 12 12 H 1.48496 * 109.47067 * 240.00526 * 9 7 5 13 13 C 1.53002 * 109.46935 * 120.00151 * 2 1 3 14 14 N 1.46502 * 109.46881 * 299.99748 * 13 2 1 15 15 C 1.34780 * 120.00195 * 179.97438 * 14 13 2 16 16 O 1.21289 * 119.99335 * 0.02562 * 15 14 13 17 17 C 1.50691 * 120.00341 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.69566 * 60.56024 * 17 15 14 19 19 C 1.53411 * 109.69851 * 299.99923 * 17 15 14 20 20 O 1.42831 * 108.38102 * 175.58150 * 19 17 15 21 21 C 1.35841 * 117.86097 * 49.16716 * 20 19 17 22 22 C 1.39148 * 118.49783 * 163.00805 * 21 20 19 23 23 C 1.37967 * 120.21389 * 180.02562 * 22 21 20 24 24 C 1.38293 * 119.95919 * 359.35852 * 23 22 21 25 25 C 1.38104 * 119.97918 * 0.66851 * 24 23 22 26 26 C 1.38372 * 121.80622 * 342.81137 * 21 20 19 27 27 C 1.50766 * 121.40811 * 0.46396 * 26 21 20 28 28 H 1.09002 * 109.47150 * 300.00113 * 1 2 3 29 29 H 1.09008 * 109.46982 * 59.99844 * 1 2 3 30 30 H 1.08998 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46973 * 300.00121 * 3 2 1 33 33 H 1.09002 * 109.47053 * 59.99828 * 3 2 1 34 34 H 1.09002 * 109.47499 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.47227 * 300.00878 * 4 2 1 36 36 H 0.97003 * 120.00408 * 179.97438 * 8 7 5 37 37 H 1.08991 * 109.47334 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47374 * 59.99181 * 13 2 1 39 39 H 0.97004 * 120.00336 * 0.02562 * 14 13 2 40 40 H 1.09006 * 109.68215 * 55.86010 * 19 17 15 41 41 H 1.08998 * 109.71464 * 295.32266 * 19 17 15 42 42 H 1.08002 * 119.88847 * 359.75363 * 22 21 20 43 43 H 1.08007 * 120.01799 * 179.65936 * 23 22 21 44 44 H 1.07996 * 120.00724 * 180.35000 * 24 23 22 45 45 H 1.07998 * 119.84151 * 179.73537 * 25 24 23 46 46 H 1.09000 * 109.44140 * 222.12017 * 27 26 21 47 47 H 1.09000 * 109.43661 * 102.24341 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0108 -2.4796 6 1 0.9172 0.8675 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 0.4247 1.5663 -4.8530 11 1 2.4045 0.8661 -6.0650 12 1 0.4244 -0.5338 -6.0660 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8767 -0.4914 3.6696 16 8 2.5740 -1.4775 3.7808 17 6 1.3739 0.2187 4.9000 18 1 0.2840 0.2122 4.9083 19 6 1.8825 1.6661 4.9058 20 8 1.3072 2.3410 6.0254 21 6 1.3786 1.7334 7.2383 22 6 1.1606 2.5001 8.3788 23 6 1.2250 1.9193 9.6286 24 6 1.4940 0.5681 9.7492 25 6 1.7115 -0.1957 8.6194 26 6 1.6562 0.3835 7.3625 27 6 1.9046 -0.4820 6.1532 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2492 36 1 2.8617 -1.8824 -4.7335 37 1 3.1299 -0.7217 1.2491 38 1 1.6765 -1.7489 1.2493 39 1 0.9937 0.7579 2.3564 40 1 1.5832 2.1641 3.9835 41 1 2.9691 1.6737 4.9912 42 1 0.9445 3.5541 8.2856 43 1 1.0606 2.5185 10.5120 44 1 1.5390 0.1115 10.7268 45 1 1.9256 -1.2498 8.7163 46 1 1.3933 -1.4364 6.2790 47 1 2.9752 -0.6562 6.0456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376565965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:31 Heat of formation + Delta-G solvation = -92.736065 kcal Electronic energy + Delta-G solvation = -26292.103303 eV Core-core repulsion = 22631.162246 eV Total energy + Delta-G solvation = -3660.941058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01887 -40.69508 -38.74853 -38.36749 -35.31608 -35.23894 -33.96402 -31.79990 -31.17465 -29.11589 -27.95460 -27.82377 -26.70850 -25.61244 -24.47119 -23.49083 -21.97108 -20.84753 -19.82993 -18.84545 -18.46493 -18.34863 -17.50031 -16.73353 -16.66865 -16.49119 -16.36632 -15.81703 -15.53150 -15.21173 -14.91930 -14.73503 -14.66693 -14.43599 -14.31146 -14.14466 -13.94028 -13.84987 -13.68632 -12.89676 -12.73109 -12.69409 -12.59581 -12.49374 -12.33810 -12.23351 -12.15049 -11.96086 -11.85849 -11.63300 -11.53691 -11.17626 -10.89640 -10.76901 -10.52377 -10.12586 -9.73682 -9.14203 -8.14307 -6.21798 0.36377 0.46885 1.41539 1.42941 1.48561 1.54304 2.03868 2.29134 2.44585 2.81542 3.20409 3.36915 3.52102 3.63139 3.84333 3.93696 3.99364 4.08351 4.11104 4.22495 4.28552 4.36905 4.42389 4.51867 4.61316 4.68757 4.70681 4.72704 4.80416 4.87349 4.94635 4.96858 5.09388 5.11333 5.13595 5.34845 5.36986 5.45713 5.51411 5.53177 5.54638 5.57242 5.61395 5.80763 5.85765 5.90376 6.30048 6.41150 6.49839 6.93902 7.15851 7.46025 8.98271 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.002283 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.369532 B =12259.942767 C =12751.442580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.141 3.859 14 N -0.705 5.705 15 C 0.520 3.480 16 O -0.579 6.579 17 C -0.135 4.135 18 H 0.128 0.872 19 C 0.073 3.927 20 O -0.316 6.316 21 C 0.106 3.894 22 C -0.158 4.158 23 C -0.089 4.089 24 C -0.153 4.153 25 C -0.094 4.094 26 C -0.169 4.169 27 C -0.057 4.057 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.072 0.928 34 H -0.014 1.014 35 H -0.015 1.015 36 H 0.259 0.741 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.414 0.586 40 H 0.136 0.864 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.136 0.864 46 H 0.086 0.914 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 9.524 26.642 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.180 1.180 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.017 3.983 14 N -0.358 5.358 15 C 0.307 3.693 16 O -0.458 6.458 17 C -0.157 4.157 18 H 0.146 0.854 19 C -0.002 4.002 20 O -0.230 6.230 21 C 0.061 3.939 22 C -0.177 4.177 23 C -0.107 4.107 24 C -0.170 4.170 25 C -0.112 4.112 26 C -0.169 4.169 27 C -0.094 4.094 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.253 0.747 40 H 0.154 0.846 41 H 0.087 0.913 42 H 0.158 0.842 43 H 0.173 0.827 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.105 0.895 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.801 8.918 26.525 28.393 hybrid contribution 0.058 -0.305 -1.583 1.613 sum -4.743 8.613 24.941 26.810 Atomic orbital electron populations 1.21715 0.93626 1.00984 1.01736 1.20703 0.96657 0.96380 0.92723 1.21714 1.00024 0.94514 1.01803 1.18986 0.94312 0.94195 0.92403 1.21626 1.30230 1.12002 0.91021 0.90859 1.25959 0.95748 0.95913 1.02771 1.70123 1.38862 1.25011 1.23995 0.85494 0.78018 0.78828 0.79284 1.17980 1.21141 1.21170 1.21242 0.97943 0.95399 0.83745 1.46008 1.52961 1.32073 1.04752 1.20616 0.79615 0.84157 0.84943 1.90709 1.39640 1.28250 1.87245 1.21949 1.04119 0.96870 0.92714 0.85445 1.23036 0.98282 0.89919 0.88965 1.86020 1.75763 1.46682 1.14562 1.19007 0.98385 0.90893 0.85628 1.20883 1.05638 1.00775 0.90366 1.21309 0.97070 0.95320 0.96999 1.21379 1.02016 0.94425 0.99229 1.21175 0.98067 1.00849 0.91153 1.19926 1.07614 0.93031 0.96375 1.20233 1.02137 0.97764 0.89280 0.91029 0.92586 0.94469 0.94285 0.92615 0.90890 0.99535 0.99640 0.93222 0.93292 0.93516 0.74744 0.84617 0.91304 0.84167 0.82733 0.83485 0.84634 0.89509 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 2 C -0.06 -2.31 0.54 -52.18 -0.03 -2.33 16 3 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 4 C 0.04 1.92 4.04 29.85 0.12 2.04 16 5 C -0.51 -26.88 7.65 25.60 0.20 -26.69 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 8 N -0.94 -56.69 13.29 21.45 0.28 -56.41 16 9 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.14 4.73 4.56 86.38 0.39 5.13 16 14 N -0.71 -17.47 4.84 -463.06 -2.24 -19.71 16 15 C 0.52 13.63 7.16 87.65 0.63 14.25 16 16 O -0.58 -20.45 15.80 -3.06 -0.05 -20.50 16 17 C -0.14 -2.61 2.76 -11.38 -0.03 -2.64 16 18 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 19 C 0.07 1.24 6.25 72.12 0.45 1.69 16 20 O -0.32 -6.20 10.27 -91.77 -0.94 -7.14 16 21 C 0.11 2.10 6.47 22.52 0.15 2.24 16 22 C -0.16 -2.60 9.94 22.42 0.22 -2.38 16 23 C -0.09 -1.15 10.04 22.22 0.22 -0.93 16 24 C -0.15 -2.03 10.04 22.25 0.22 -1.81 16 25 C -0.09 -1.56 9.67 22.30 0.22 -1.34 16 26 C -0.17 -3.30 5.75 -19.75 -0.11 -3.41 16 27 C -0.06 -1.18 4.66 29.89 0.14 -1.04 16 28 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 29 H 0.06 1.94 6.62 -2.38 -0.02 1.92 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 33 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.41 7.62 5.56 -92.71 -0.52 7.10 16 40 H 0.14 1.64 7.50 -2.38 -0.02 1.62 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.07 1.78 7.71 -2.39 -0.02 1.76 16 Total: -1.00 -69.90 373.36 3.94 -65.96 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.45 Total: 16.37 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.41 Total: -23.81 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.95 Total: -76.12 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.99 Total: -27.64 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.90 3.94 -65.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376565965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.775 kcal (2) G-P(sol) polarization free energy of solvation -69.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds