Wall clock time and date at job start Tue Mar 31 2020 11:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53001 * 109.46984 * 240.00322 * 2 1 3 5 5 C 1.50692 * 109.47254 * 59.99409 * 4 2 1 6 6 H 1.08001 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00217 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99713 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00383 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47376 * 90.00156 * 9 7 5 11 11 H 1.48503 * 109.47631 * 210.00007 * 9 7 5 12 12 H 1.48504 * 109.47398 * 330.00257 * 9 7 5 13 13 C 1.52995 * 109.47091 * 120.00090 * 2 1 3 14 14 N 1.46501 * 109.47272 * 299.99707 * 13 2 1 15 15 C 1.34775 * 119.99855 * 179.72658 * 14 13 2 16 16 O 1.21286 * 120.00285 * 355.18414 * 15 14 13 17 17 C 1.50702 * 119.99880 * 175.18324 * 15 14 13 18 18 H 1.08998 * 109.33300 * 128.92920 * 17 15 14 19 19 O 1.42721 * 109.33557 * 9.41563 * 17 15 14 20 20 C 1.43226 * 113.14719 * 188.03528 * 19 17 15 21 21 C 1.52973 * 108.45747 * 70.68042 * 20 19 17 22 22 C 1.50744 * 109.75118 * 310.71970 * 21 20 19 23 23 C 1.38598 * 118.76148 * 196.84799 * 22 21 20 24 24 C 1.38070 * 120.27527 * 180.48064 * 23 22 21 25 25 C 1.38256 * 119.85934 * 359.97438 * 24 23 22 26 26 C 1.38058 * 119.90443 * 359.89824 * 25 24 23 27 27 C 1.37902 * 121.34917 * 17.12590 * 22 21 20 28 28 H 1.09000 * 109.47125 * 299.99679 * 1 2 3 29 29 H 1.08999 * 109.47323 * 59.99896 * 1 2 3 30 30 H 1.09005 * 109.47306 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46776 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47164 * 300.00201 * 3 2 1 33 33 H 1.09000 * 109.47363 * 60.00485 * 3 2 1 34 34 H 1.08996 * 109.47301 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46542 * 299.99785 * 4 2 1 36 36 H 0.97004 * 119.99827 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47155 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.47147 * 60.00223 * 13 2 1 39 39 H 0.97000 * 120.00114 * 0.02562 * 14 13 2 40 40 H 1.09004 * 109.66007 * 310.98534 * 20 19 17 41 41 H 1.08999 * 109.63390 * 190.36052 * 20 19 17 42 42 H 1.09001 * 109.42257 * 190.63651 * 21 20 19 43 43 H 1.08996 * 109.37707 * 70.77832 * 21 20 19 44 44 H 1.08001 * 119.85938 * 0.46012 * 23 22 21 45 45 H 1.08002 * 120.07049 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.04982 * 179.88012 * 25 24 23 47 47 H 1.07991 * 119.85190 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0109 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2488 0.3994 -5.2571 10 1 2.2271 1.4412 -5.6608 11 1 1.0841 -0.5795 -6.3617 12 1 -0.0595 1.0369 -4.9616 13 6 2.0399 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8728 -0.4944 3.6694 16 8 2.4918 -1.5313 3.7820 17 6 1.4626 0.2755 4.8983 18 1 0.9559 -0.3953 5.5920 19 8 0.5704 1.3243 4.5230 20 6 0.2715 2.2213 5.5989 21 6 1.5213 3.0505 5.8995 22 6 2.7157 2.1408 6.0357 23 6 3.8600 2.6294 6.6462 24 6 4.9753 1.8265 6.7785 25 6 4.9504 0.5294 6.3004 26 6 3.8100 0.0410 5.6945 27 6 2.6889 0.8460 5.5620 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2492 36 1 2.8621 -1.8817 -4.7337 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2492 39 1 0.9937 0.7578 2.3565 40 1 -0.0113 1.6511 6.4838 41 1 -0.5453 2.8820 5.3087 42 1 1.3765 3.6002 6.8296 43 1 1.6928 3.7545 5.0853 44 1 3.8793 3.6426 7.0197 45 1 5.8654 2.2107 7.2544 46 1 5.8217 -0.1007 6.4005 47 1 3.7916 -0.9721 5.3210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377131050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:27 Heat of formation + Delta-G solvation = -92.910203 kcal Electronic energy + Delta-G solvation = -27021.191391 eV Core-core repulsion = 23360.242782 eV Total energy + Delta-G solvation = -3660.948609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89920 -40.31705 -38.66809 -38.56617 -35.25746 -34.16351 -33.77638 -32.78108 -30.56347 -29.13361 -28.15333 -27.97585 -26.80262 -24.98788 -24.62899 -23.42503 -21.71254 -21.00491 -19.98306 -18.58229 -18.39663 -18.20903 -17.45953 -16.72284 -16.57182 -16.41679 -16.32741 -15.99094 -15.45876 -15.35553 -14.83302 -14.74274 -14.56014 -14.42911 -14.17867 -13.94717 -13.89840 -13.60160 -13.45684 -12.90386 -12.86561 -12.75830 -12.71651 -12.59721 -12.34357 -12.23886 -12.21154 -11.98520 -11.60895 -11.55067 -11.21336 -10.92529 -10.82931 -10.77221 -10.50963 -10.09621 -9.76674 -9.60514 -8.13558 -6.21441 0.24707 0.39484 1.43000 1.43206 1.43622 1.54088 2.13398 2.44900 2.48548 2.78053 3.20856 3.47650 3.65417 3.84765 3.90244 3.95981 4.05267 4.08989 4.18593 4.21818 4.24839 4.35117 4.54616 4.59732 4.68131 4.69965 4.71519 4.75702 4.87031 4.95580 4.97136 5.03593 5.09140 5.11304 5.17915 5.37363 5.44408 5.46517 5.48405 5.51435 5.54460 5.55965 5.57671 5.78869 5.86433 5.89922 6.02876 6.30538 6.53102 6.93349 7.12329 7.46249 8.99084 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.002927 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.017266 B = 9563.591116 C = 9874.506846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.259 1.259 13 C 0.138 3.862 14 N -0.694 5.694 15 C 0.523 3.477 16 O -0.574 6.574 17 C 0.130 3.870 18 H 0.110 0.890 19 O -0.381 6.381 20 C 0.053 3.947 21 C -0.114 4.114 22 C -0.073 4.073 23 C -0.125 4.125 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.134 4.134 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.064 0.936 34 H -0.015 1.015 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.417 0.583 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.134 0.866 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 12.916 25.270 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.183 1.183 13 C 0.014 3.986 14 N -0.346 5.346 15 C 0.309 3.691 16 O -0.455 6.455 17 C 0.069 3.931 18 H 0.128 0.872 19 O -0.300 6.300 20 C -0.022 4.022 21 C -0.151 4.151 22 C -0.073 4.073 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.155 4.155 26 C -0.144 4.144 27 C -0.135 4.135 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.256 0.744 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.171 0.829 45 H 0.167 0.833 46 H 0.152 0.848 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.720 12.132 25.009 27.929 hybrid contribution 0.222 -0.303 -1.104 1.167 sum -2.497 11.829 23.905 26.788 Atomic orbital electron populations 1.21682 0.93540 1.01001 1.01570 1.20705 0.96769 0.96221 0.92763 1.21678 0.99776 0.94767 1.01524 1.18955 0.94226 0.94210 0.92210 1.21586 1.30469 1.12082 0.91044 0.90916 1.25954 0.95662 0.95850 1.02730 1.70126 1.38801 1.24980 1.24096 0.85530 0.79211 0.78107 0.78705 1.20137 1.21540 1.18287 1.21303 0.97723 0.95633 0.83962 1.45989 1.52105 1.31904 1.04604 1.20501 0.78853 0.84688 0.85105 1.90674 1.43071 1.24933 1.86802 1.20783 0.89550 0.89666 0.93067 0.87232 1.87990 1.63677 1.40392 1.37938 1.23018 0.97490 0.91692 0.90019 1.21249 0.91594 0.97391 1.04841 1.19826 0.97455 0.92770 0.97236 1.21425 0.92196 1.01094 0.99543 1.21532 0.99377 0.93489 0.98571 1.21363 0.97988 0.97149 0.98978 1.21521 0.93608 1.00680 0.98636 1.19754 0.95470 0.95652 1.02620 0.91536 0.92367 0.94305 0.94548 0.92298 0.91673 0.99616 0.99484 0.93166 0.93543 0.93187 0.74373 0.91240 0.85070 0.86628 0.88998 0.82870 0.83255 0.84824 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 8.05 71.98 0.58 -3.69 16 2 C -0.06 -2.54 0.54 -52.18 -0.03 -2.57 16 3 C -0.12 -4.29 8.05 71.98 0.58 -3.71 16 4 C 0.04 2.16 4.04 29.85 0.12 2.28 16 5 C -0.51 -27.91 7.65 25.60 0.20 -27.72 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 13 C 0.14 5.23 4.57 86.38 0.39 5.63 16 14 N -0.69 -21.74 4.91 -463.06 -2.27 -24.01 16 15 C 0.52 16.63 6.85 87.66 0.60 17.23 16 16 O -0.57 -22.18 14.81 -3.05 -0.05 -22.22 16 17 C 0.13 3.14 3.22 29.09 0.09 3.23 16 18 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 19 O -0.38 -7.59 9.18 -148.98 -1.37 -8.95 16 20 C 0.05 0.63 6.85 71.97 0.49 1.12 16 21 C -0.11 -1.30 6.00 29.85 0.18 -1.12 16 22 C -0.07 -1.32 5.78 -19.84 -0.11 -1.44 16 23 C -0.12 -1.94 9.67 22.32 0.22 -1.73 16 24 C -0.11 -1.88 10.05 22.23 0.22 -1.65 16 25 C -0.14 -2.93 10.05 22.23 0.22 -2.71 16 26 C -0.13 -3.33 9.07 22.33 0.20 -3.13 16 27 C -0.13 -3.19 5.46 -19.86 -0.11 -3.30 16 28 H 0.07 1.88 6.86 -2.39 -0.02 1.87 16 29 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 2.20 6.62 -2.39 -0.02 2.18 16 33 H 0.06 1.87 6.86 -2.39 -0.02 1.86 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.42 11.37 4.98 -92.71 -0.46 10.91 16 40 H 0.07 0.70 8.07 -2.38 -0.02 0.68 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 45 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 47 H 0.12 3.69 5.84 -2.92 -0.02 3.67 16 Total: -1.00 -70.98 369.82 3.45 -67.54 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.51 Total: 22.15 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.31 Total: -23.09 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.99 Total: -81.36 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.41 Total: -31.18 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.98 3.45 -67.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377131050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.372 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds