Wall clock time and date at job start Tue Mar 31 2020 11:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 2 1 7 7 S 1.81408 * 109.46799 * 180.02562 * 6 5 2 8 8 O 1.42102 * 110.54035 * 291.62208 * 7 6 5 9 9 O 1.42098 * 110.54418 * 68.37375 * 7 6 5 10 10 N 1.65603 * 104.44779 * 180.02562 * 7 6 5 11 11 C 1.46927 * 120.62774 * 269.71925 * 10 7 6 12 12 C 1.53628 * 108.54475 * 126.36614 * 11 10 7 13 13 C 1.53040 * 109.23613 * 54.85582 * 12 11 10 14 14 C 1.53002 * 109.44561 * 178.49712 * 13 12 11 15 15 C 1.50701 * 109.47084 * 295.05922 * 14 13 12 16 16 H 1.08001 * 120.00365 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00249 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00154 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99624 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47331 * 90.00332 * 19 17 15 21 21 H 1.48500 * 109.47014 * 209.99941 * 19 17 15 22 22 H 1.48497 * 109.47630 * 329.99789 * 19 17 15 23 23 C 1.53033 * 109.54192 * 298.50910 * 13 12 11 24 24 C 1.46923 * 120.63153 * 89.99548 * 10 7 6 25 25 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 26 26 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 30 30 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 33 33 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 2 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 2 38 38 H 1.08998 * 109.58424 * 246.20216 * 11 10 7 39 39 H 1.09000 * 109.58882 * 6.62795 * 11 10 7 40 40 H 1.08990 * 109.63424 * 294.86499 * 12 11 10 41 41 H 1.09005 * 109.43021 * 174.72025 * 12 11 10 42 42 H 1.09000 * 109.46180 * 58.53586 * 13 12 11 43 43 H 1.09000 * 109.47367 * 55.05608 * 14 13 12 44 44 H 1.09001 * 109.47151 * 175.06499 * 14 13 12 45 45 H 0.97002 * 119.99436 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.49499 * 301.41844 * 23 13 12 47 47 H 1.09001 * 109.50038 * 181.32257 * 23 13 12 48 48 H 1.08997 * 109.58805 * 353.37544 * 24 10 7 49 49 H 1.09003 * 109.58413 * 113.65981 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5300 -2.1638 1.2490 7 16 2.1342 -3.0188 2.7305 8 8 3.5416 -3.2023 2.6612 9 8 1.5212 -2.4880 3.8974 10 7 1.5166 -4.5502 2.6045 11 6 0.2074 -4.8794 3.1845 12 6 -0.6674 -5.5094 2.0899 13 6 0.0691 -6.7053 1.4820 14 6 -0.8136 -7.3593 0.4170 15 6 -2.0437 -7.9361 1.0690 16 1 -2.1824 -7.8450 2.1362 17 6 -2.9928 -8.5792 0.3030 18 7 -4.0665 -9.0821 0.8720 19 14 -2.7533 -8.7362 -1.5429 20 1 -2.0203 -9.9925 -1.8419 21 1 -4.0781 -8.7647 -2.2132 22 1 -1.9714 -7.5763 -2.0411 23 6 1.3747 -6.2303 0.8405 24 6 2.2702 -5.6070 1.9160 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6765 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7209 -1.2497 34 1 1.6768 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2488 36 1 0.4400 -2.1639 1.2491 37 1 1.8933 -2.6776 0.3591 38 1 0.3381 -5.5864 4.0037 39 1 -0.2669 -3.9708 3.5553 40 1 -0.8685 -4.7725 1.3125 41 1 -1.6083 -5.8450 2.5261 42 1 0.2917 -7.4307 2.2645 43 1 -1.1092 -6.6117 -0.3191 44 1 -0.2571 -8.1557 -0.0772 45 1 -4.7343 -9.5343 0.3330 46 1 1.1543 -5.4865 0.0748 47 1 1.8873 -7.0788 0.3873 48 1 3.1573 -5.1785 1.4496 49 1 2.5677 -6.3709 2.6344 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399343781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:17 Heat of formation + Delta-G solvation = -108.139410 kcal Electronic energy + Delta-G solvation = -26211.372371 eV Core-core repulsion = 22685.207325 eV Total energy + Delta-G solvation = -3526.165045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.41364 -38.38559 -37.17495 -35.96496 -34.02356 -32.02975 -31.51275 -30.78932 -28.24443 -27.61043 -27.56789 -24.58577 -24.01302 -22.98950 -21.12629 -19.64000 -19.01842 -18.69750 -17.63104 -16.76233 -16.54572 -16.28320 -15.20604 -14.96895 -14.46846 -14.37977 -14.20740 -14.08122 -13.98074 -13.75172 -13.46588 -13.14656 -13.01396 -12.51660 -12.41327 -12.29530 -12.28624 -12.11494 -12.00136 -11.94094 -11.75804 -11.57833 -11.49085 -11.40334 -11.06204 -10.93689 -10.91216 -10.88397 -10.69037 -10.50778 -10.37006 -9.83585 -9.74251 -9.53707 -9.09247 -8.72864 -8.56191 -6.06850 -4.04273 0.21957 2.62349 3.27188 3.35336 3.37497 3.76468 4.06505 4.22308 4.41145 4.42037 4.42211 4.73058 4.74045 4.87686 5.14619 5.21481 5.22378 5.25734 5.28175 5.31758 5.34679 5.45833 5.49103 5.51959 5.55515 5.58567 5.65806 5.66658 5.71310 5.76749 5.79920 5.93135 5.94186 6.06113 6.08043 6.11038 6.27161 6.31303 6.53831 6.57988 6.79028 6.84316 6.99494 7.22630 7.41362 7.77365 8.51388 8.98407 9.56170 11.06427 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.003746 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.417613 B = 7472.636481 C = 8502.696850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.636 4.636 7 S 2.606 3.394 8 O -0.961 6.961 9 O -0.958 6.958 10 N -0.996 5.996 11 C 0.118 3.882 12 C -0.121 4.121 13 C -0.071 4.071 14 C -0.010 4.010 15 C -0.516 4.516 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.134 4.134 24 C 0.123 3.877 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.026 17.800 -1.824 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.205 4.205 5 C -0.139 4.139 6 C -0.764 4.764 7 S 2.700 3.300 8 O -0.951 6.951 9 O -0.949 6.949 10 N -0.834 5.834 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.089 4.089 14 C -0.047 4.047 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.173 4.173 24 C -0.002 4.002 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.404 18.007 -1.139 22.476 hybrid contribution -0.519 -0.322 -1.733 1.838 sum 12.885 17.685 -2.873 22.069 Atomic orbital electron populations 1.21981 0.94193 1.02420 1.01991 1.20453 0.96065 0.95216 0.94474 1.21901 1.01106 0.95112 1.02048 1.21975 1.01084 1.00694 0.96760 1.21398 1.01182 0.91500 0.99865 1.30823 1.13532 1.08875 1.23216 1.05101 0.74454 0.73732 0.76720 1.93568 1.29360 1.84628 1.87587 1.93579 1.78151 1.79085 1.44037 1.57651 1.30405 1.25287 1.70073 1.21699 0.81441 1.01070 0.96425 1.22004 0.99159 0.97511 0.97263 1.20958 0.93070 0.96162 0.98727 1.19629 0.95272 0.95274 0.94530 1.21149 1.02791 1.35304 0.96166 0.90800 1.25035 0.95094 0.95099 0.98317 1.69914 1.10223 1.38278 1.35870 0.86812 0.77358 0.78905 0.86341 1.20405 1.21531 1.19162 1.22088 0.97446 1.00374 0.97368 1.21460 0.93474 0.90267 0.95020 0.92386 0.92449 0.91979 0.92479 0.92355 0.92422 0.92064 0.92458 0.92469 0.90401 0.90477 0.84516 0.84704 0.91007 0.89846 0.92512 0.89271 0.91637 0.96762 0.97103 0.92799 0.92203 0.91140 0.89990 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.12 37.16 0.30 -0.90 16 2 C -0.06 -0.48 0.80 -154.51 -0.12 -0.61 16 3 C -0.14 -0.99 8.47 37.15 0.31 -0.68 16 4 C -0.15 -1.15 8.12 37.16 0.30 -0.85 16 5 C -0.10 -0.88 4.28 -26.73 -0.11 -0.99 16 6 C -0.64 -5.91 5.47 37.16 0.20 -5.71 16 7 S 2.61 32.44 5.41 -107.50 -0.58 31.86 16 8 O -0.96 -14.18 16.72 -57.54 -0.96 -15.14 16 9 O -0.96 -14.53 16.72 -57.54 -0.96 -15.50 16 10 N -1.00 -12.93 3.21 -113.27 -0.36 -13.29 16 11 C 0.12 1.64 6.34 -3.48 -0.02 1.62 16 12 C -0.12 -1.95 5.21 -26.38 -0.14 -2.09 16 13 C -0.07 -1.24 2.10 -90.58 -0.19 -1.43 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 15 C -0.52 -13.84 8.94 -34.44 -0.31 -14.15 16 16 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 17 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 18 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 19 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.13 -1.88 5.36 -26.61 -0.14 -2.02 16 24 C 0.12 1.55 6.31 -3.71 -0.02 1.53 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.14 1.17 6.43 -51.92 -0.33 0.84 16 37 H 0.13 1.10 6.43 -51.93 -0.33 0.76 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.06 7.09 -51.93 -0.37 0.69 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 44 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 0.92 7.10 -51.93 -0.37 0.55 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -32.88 382.08 -10.23 -43.11 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -9.09 Total: -2.03 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -0.14 Total: -24.85 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.41 Total: -39.69 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.92 Total: -30.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 32.44 SS G_CDS: -0.58 Total: 31.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.88 -10.23 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399343781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.025 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds