Wall clock time and date at job start Tue Mar 31 2020 11:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 2 1 7 7 S 1.81408 * 109.46799 * 180.02562 * 6 5 2 8 8 O 1.42102 * 110.54035 * 291.62208 * 7 6 5 9 9 O 1.42098 * 110.54418 * 68.37375 * 7 6 5 10 10 N 1.65603 * 104.44779 * 180.02562 * 7 6 5 11 11 C 1.46927 * 120.62774 * 269.71925 * 10 7 6 12 12 C 1.53628 * 108.54475 * 126.36614 * 11 10 7 13 13 C 1.53040 * 109.23613 * 54.85582 * 12 11 10 14 14 C 1.53002 * 109.44561 * 178.49712 * 13 12 11 15 15 C 1.50701 * 109.47084 * 295.05922 * 14 13 12 16 16 H 1.08001 * 120.00365 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00249 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00154 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99624 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47331 * 90.00332 * 19 17 15 21 21 H 1.48500 * 109.47014 * 209.99941 * 19 17 15 22 22 H 1.48497 * 109.47630 * 329.99789 * 19 17 15 23 23 C 1.53033 * 109.54192 * 298.50910 * 13 12 11 24 24 C 1.46923 * 120.63153 * 89.99548 * 10 7 6 25 25 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 26 26 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 30 30 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 33 33 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 2 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 2 38 38 H 1.08998 * 109.58424 * 246.20216 * 11 10 7 39 39 H 1.09000 * 109.58882 * 6.62795 * 11 10 7 40 40 H 1.08990 * 109.63424 * 294.86499 * 12 11 10 41 41 H 1.09005 * 109.43021 * 174.72025 * 12 11 10 42 42 H 1.09000 * 109.46180 * 58.53586 * 13 12 11 43 43 H 1.09000 * 109.47367 * 55.05608 * 14 13 12 44 44 H 1.09001 * 109.47151 * 175.06499 * 14 13 12 45 45 H 0.97002 * 119.99436 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.49499 * 301.41844 * 23 13 12 47 47 H 1.09001 * 109.50038 * 181.32257 * 23 13 12 48 48 H 1.08997 * 109.58805 * 353.37544 * 24 10 7 49 49 H 1.09003 * 109.58413 * 113.65981 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5300 -2.1638 1.2490 7 16 2.1342 -3.0188 2.7305 8 8 3.5416 -3.2023 2.6612 9 8 1.5212 -2.4880 3.8974 10 7 1.5166 -4.5502 2.6045 11 6 0.2074 -4.8794 3.1845 12 6 -0.6674 -5.5094 2.0899 13 6 0.0691 -6.7053 1.4820 14 6 -0.8136 -7.3593 0.4170 15 6 -2.0437 -7.9361 1.0690 16 1 -2.1824 -7.8450 2.1362 17 6 -2.9928 -8.5792 0.3030 18 7 -4.0665 -9.0821 0.8720 19 14 -2.7533 -8.7362 -1.5429 20 1 -2.0203 -9.9925 -1.8419 21 1 -4.0781 -8.7647 -2.2132 22 1 -1.9714 -7.5763 -2.0411 23 6 1.3747 -6.2303 0.8405 24 6 2.2702 -5.6070 1.9160 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6765 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7209 -1.2497 34 1 1.6768 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2488 36 1 0.4400 -2.1639 1.2491 37 1 1.8933 -2.6776 0.3591 38 1 0.3381 -5.5864 4.0037 39 1 -0.2669 -3.9708 3.5553 40 1 -0.8685 -4.7725 1.3125 41 1 -1.6083 -5.8450 2.5261 42 1 0.2917 -7.4307 2.2645 43 1 -1.1092 -6.6117 -0.3191 44 1 -0.2571 -8.1557 -0.0772 45 1 -4.7343 -9.5343 0.3330 46 1 1.1543 -5.4865 0.0748 47 1 1.8873 -7.0788 0.3873 48 1 3.1573 -5.1785 1.4496 49 1 2.5677 -6.3709 2.6344 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399343781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:16 Heat of formation + Delta-G solvation = -128.677021 kcal Electronic energy + Delta-G solvation = -26212.262948 eV Core-core repulsion = 22685.207325 eV Total energy + Delta-G solvation = -3527.055623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.62916 -38.99751 -38.24502 -37.03742 -35.64239 -33.87066 -32.21189 -31.93381 -29.93291 -28.15403 -28.14053 -25.83888 -25.06259 -24.16794 -22.63874 -20.92874 -19.80734 -19.65132 -18.88859 -18.52480 -17.51754 -17.25847 -16.33669 -15.96615 -15.63801 -15.43628 -15.27255 -15.15914 -14.93409 -14.74494 -14.71424 -14.45637 -14.26847 -13.65300 -13.63400 -13.44903 -13.25392 -13.12158 -12.84906 -12.83443 -12.78198 -12.57053 -12.50045 -12.32298 -12.21959 -12.20207 -12.06355 -11.97889 -11.68043 -11.53573 -11.49767 -11.37829 -11.20380 -10.98680 -10.84295 -10.68686 -9.85246 -8.22769 -6.24497 -0.74072 1.38358 1.39564 1.50732 1.62979 2.40104 2.84831 3.12571 3.13504 3.49461 3.71828 3.75383 3.82168 4.04211 4.06892 4.09327 4.23201 4.32551 4.40264 4.52916 4.53640 4.60803 4.64123 4.68976 4.76903 4.84202 4.86475 4.90243 4.93992 4.96027 5.05237 5.09756 5.09944 5.10466 5.21166 5.24355 5.27052 5.32725 5.38916 5.44571 5.49337 5.50991 5.53456 5.69381 5.80053 5.81619 6.38383 6.84200 7.39337 8.93865 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.003746 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.417613 B = 7472.636481 C = 8502.696850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.151 4.151 5 C -0.110 4.110 6 C -0.615 4.615 7 S 2.610 3.390 8 O -0.985 6.985 9 O -0.991 6.991 10 N -0.999 5.999 11 C 0.126 3.874 12 C -0.116 4.116 13 C -0.070 4.070 14 C -0.008 4.008 15 C -0.516 4.516 16 H 0.036 0.964 17 C 0.000 4.000 18 N -0.956 5.956 19 Si 0.946 3.054 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.243 1.243 23 C -0.126 4.126 24 C 0.122 3.878 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.784 19.388 -4.138 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.060 4.060 3 C -0.203 4.203 4 C -0.209 4.209 5 C -0.149 4.149 6 C -0.747 4.747 7 S 2.709 3.291 8 O -0.976 6.976 9 O -0.981 6.981 10 N -0.836 5.836 11 C 0.000 4.000 12 C -0.155 4.155 13 C -0.089 4.089 14 C -0.045 4.045 15 C -0.554 4.554 16 H 0.054 0.946 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.770 3.230 20 H -0.197 1.197 21 H -0.217 1.217 22 H -0.166 1.166 23 C -0.165 4.165 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.122 0.878 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.202 19.584 -3.416 25.027 hybrid contribution -1.089 -0.778 -0.946 1.639 sum 14.114 18.806 -4.361 23.914 Atomic orbital electron populations 1.22028 0.94410 1.02274 1.02297 1.20450 0.95874 0.95693 0.94017 1.21915 1.01424 0.94527 1.02422 1.22016 1.01432 1.00627 0.96777 1.21556 1.01775 0.91019 1.00582 1.30646 1.14173 1.08868 1.21024 1.04868 0.73684 0.73359 0.77215 1.93533 1.30883 1.84948 1.88215 1.93535 1.78418 1.79419 1.46758 1.57590 1.29750 1.25909 1.70335 1.21530 0.81718 1.01299 0.95408 1.21895 0.98034 0.97423 0.98144 1.20887 0.94536 0.96141 0.97344 1.19605 0.93878 0.95485 0.95543 1.21521 1.04540 1.34557 0.94812 0.94571 1.25996 0.94789 0.95058 1.03749 1.70083 1.11617 1.40100 1.37919 0.85721 0.77490 0.79852 0.79907 1.19678 1.21669 1.16639 1.22009 0.95355 1.01274 0.97841 1.21527 0.93749 0.90324 0.94701 0.92387 0.91965 0.92317 0.92048 0.91792 0.92311 0.92147 0.92021 0.92029 0.90257 0.89827 0.83341 0.82732 0.91560 0.88720 0.91204 0.92561 0.93299 0.96126 0.96691 0.92868 0.90565 0.90075 0.87849 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.12 71.98 0.58 -1.51 16 2 C -0.06 -0.77 0.80 -52.18 -0.04 -0.81 16 3 C -0.15 -1.65 8.47 71.98 0.61 -1.04 16 4 C -0.15 -1.88 8.12 71.98 0.58 -1.30 16 5 C -0.11 -1.64 4.28 30.59 0.13 -1.51 16 6 C -0.61 -9.60 5.47 71.98 0.39 -9.21 16 7 S 2.61 60.20 5.41 -56.49 -0.31 59.90 16 8 O -0.99 -27.22 16.72 -127.65 -2.13 -29.35 16 9 O -0.99 -29.11 16.72 -127.65 -2.13 -31.24 16 10 N -1.00 -24.12 3.21 -512.28 -1.65 -25.77 16 11 C 0.13 3.40 6.34 86.51 0.55 3.94 16 12 C -0.12 -3.71 5.21 30.82 0.16 -3.55 16 13 C -0.07 -2.42 2.10 -10.77 -0.02 -2.44 16 14 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 15 C -0.52 -28.27 8.94 25.60 0.23 -28.04 16 16 H 0.04 2.19 7.30 -2.91 -0.02 2.17 16 17 C 0.00 0.00 5.47 84.66 0.46 0.46 16 18 N -0.96 -59.22 13.96 21.45 0.30 -58.92 16 19 Si 0.95 43.10 27.47 68.60 1.88 44.99 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 23 C -0.13 -3.17 5.36 30.67 0.16 -3.00 16 24 C 0.12 2.77 6.31 86.36 0.55 3.31 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.83 6.43 -2.39 -0.02 0.82 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.75 6.43 -2.39 -0.02 0.74 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.15 2.07 6.43 -2.39 -0.02 2.05 16 37 H 0.15 1.88 6.43 -2.39 -0.02 1.87 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 2.35 7.09 -2.39 -0.02 2.33 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 2.16 6.91 -2.38 -0.02 2.14 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 44 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.10 1.96 7.10 -2.39 -0.02 1.94 16 49 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.89 382.08 1.25 -70.63 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.83 Total: 14.68 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 4.46 Total: -44.92 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.35 Total: -84.69 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -4.27 Total: -60.60 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 16 Polarization: 60.20 SS G_CDS: -0.31 Total: 59.90 kcal Total: -71.89 1.25 -70.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399343781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.043 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds