Wall clock time and date at job start Tue Mar 31 2020 11:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46423 * 2 1 4 4 C 1.52995 * 109.47250 * 240.00410 * 2 1 3 5 5 C 1.50702 * 109.47365 * 59.99705 * 4 2 1 6 6 H 1.07998 * 120.00104 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00093 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99859 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46928 * 89.99867 * 9 7 5 11 11 H 1.48500 * 109.46780 * 209.99639 * 9 7 5 12 12 H 1.48497 * 109.47024 * 329.99692 * 9 7 5 13 13 C 1.52996 * 109.46981 * 119.99717 * 2 1 3 14 14 N 1.46493 * 109.47448 * 300.00544 * 13 2 1 15 15 C 1.34783 * 120.00148 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99556 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99973 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.71922 * 305.54201 * 17 15 14 19 19 C 1.53406 * 109.68482 * 66.09089 * 17 15 14 20 20 C 1.53065 * 108.31901 * 184.41224 * 19 17 15 21 21 C 1.50763 * 109.68624 * 311.83358 * 20 19 17 22 22 C 1.38516 * 118.76514 * 197.58242 * 21 20 19 23 23 C 1.38105 * 120.31601 * 180.44762 * 22 21 20 24 24 C 1.38296 * 119.98363 * 0.02562 * 23 22 21 25 25 C 1.37967 * 119.95810 * 0.16645 * 24 23 22 26 26 C 1.38375 * 121.40798 * 17.86327 * 21 20 19 27 27 O 1.35839 * 121.80372 * 359.35062 * 26 21 20 28 28 H 1.08996 * 109.47200 * 299.99393 * 1 2 3 29 29 H 1.09000 * 109.46805 * 60.00240 * 1 2 3 30 30 H 1.09003 * 109.46667 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46934 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47514 * 299.99924 * 3 2 1 33 33 H 1.08998 * 109.47448 * 60.00480 * 3 2 1 34 34 H 1.09003 * 109.47190 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.47025 * 299.99461 * 4 2 1 36 36 H 0.96995 * 120.00346 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47001 * 180.02562 * 13 2 1 38 38 H 1.09003 * 109.47116 * 60.00648 * 13 2 1 39 39 H 0.97000 * 120.00427 * 359.97438 * 14 13 2 40 40 H 1.09007 * 109.69274 * 304.11865 * 19 17 15 41 41 H 1.08998 * 109.69743 * 64.66412 * 19 17 15 42 42 H 1.09003 * 109.43370 * 191.76865 * 20 19 17 43 43 H 1.09002 * 109.43797 * 71.89815 * 20 19 17 44 44 H 1.07997 * 119.84018 * 0.47330 * 22 21 20 45 45 H 1.07990 * 120.00657 * 180.02562 * 23 22 21 46 46 H 1.08002 * 120.01600 * 179.88122 * 24 23 22 47 47 H 1.07993 * 119.89205 * 179.74120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6266 -1.5512 -3.8527 9 14 1.2483 0.3990 -5.2572 10 1 2.2272 1.4399 -5.6613 11 1 1.0827 -0.5801 -6.3613 12 1 -0.0594 1.0374 -4.9613 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5757 -1.4763 3.7807 17 6 1.3757 0.2198 4.8999 18 1 1.6536 1.2728 4.8555 19 6 -0.1506 0.0913 4.9844 20 6 -0.6374 0.9144 6.1796 21 6 0.1996 0.5935 7.3918 22 6 -0.2843 0.9323 8.6447 23 6 0.4600 0.6616 9.7761 24 6 1.6949 0.0498 9.6610 25 6 2.1838 -0.2864 8.4154 26 6 1.4332 -0.0224 7.2739 27 8 1.9430 -0.3786 6.0663 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1301 -0.7207 -1.2495 35 1 1.6768 -1.7488 -1.2493 36 1 2.8610 -1.8826 -4.7336 37 1 3.1300 -0.7208 1.2495 38 1 1.6768 -1.7489 1.2492 39 1 0.9942 0.7582 2.3564 40 1 -0.6025 0.4715 4.0681 41 1 -0.4242 -0.9547 5.1222 42 1 -1.6804 0.6737 6.3850 43 1 -0.5494 1.9760 5.9489 44 1 -1.2484 1.4101 8.7372 45 1 0.0777 0.9275 10.7504 46 1 2.2782 -0.1604 10.5453 47 1 3.1501 -0.7602 8.3265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412332897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:44 Heat of formation + Delta-G solvation = -71.415033 kcal Electronic energy + Delta-G solvation = -26303.189020 eV Core-core repulsion = 22643.172512 eV Total energy + Delta-G solvation = -3660.016508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16906 -39.51743 -37.72797 -36.92352 -34.75337 -33.63100 -32.18981 -31.04911 -30.45807 -27.50959 -26.95807 -26.57198 -25.54345 -24.11758 -22.92154 -22.74543 -20.92355 -20.06238 -18.56046 -18.16494 -17.17553 -16.89897 -16.33422 -15.70918 -15.49832 -15.20599 -14.84330 -14.67052 -14.51434 -14.32607 -13.96393 -13.65958 -13.52689 -13.29264 -13.14224 -12.85512 -12.80054 -12.23059 -12.11206 -12.07622 -11.81124 -11.53950 -11.30705 -11.19270 -11.05375 -10.88430 -10.76489 -10.68197 -10.45968 -10.29741 -9.93085 -9.76651 -9.21439 -9.08183 -8.96666 -8.84978 -8.41403 -8.38773 -6.02633 -4.04236 1.02248 1.15349 2.51436 2.62178 3.28854 3.36084 3.37358 3.42785 3.63811 4.20809 4.35674 4.39860 4.42774 4.52992 4.67721 4.79473 4.87505 4.95443 5.14415 5.20129 5.25446 5.32743 5.43396 5.43895 5.55921 5.56286 5.65657 5.68501 5.75962 6.01242 6.09962 6.15222 6.16511 6.21571 6.24484 6.32606 6.45349 6.49688 6.57435 6.67714 7.00088 7.02288 7.06719 7.18220 7.58262 7.61348 7.72275 7.95593 8.26519 8.37323 9.00456 9.59020 11.08752 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037572 B = 0.002282 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.050849 B =12268.451795 C =12714.085474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.129 3.871 14 N -0.715 5.715 15 C 0.515 3.485 16 O -0.520 6.520 17 C 0.075 3.925 18 H 0.097 0.903 19 C -0.150 4.150 20 C -0.076 4.076 21 C -0.164 4.164 22 C -0.085 4.085 23 C -0.155 4.155 24 C -0.088 4.088 25 C -0.146 4.146 26 C 0.135 3.865 27 O -0.288 6.288 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 7.622 24.535 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.007 3.993 14 N -0.369 5.369 15 C 0.299 3.701 16 O -0.395 6.395 17 C 0.015 3.985 18 H 0.114 0.886 19 C -0.188 4.188 20 C -0.113 4.113 21 C -0.164 4.164 22 C -0.103 4.103 23 C -0.173 4.173 24 C -0.106 4.106 25 C -0.165 4.165 26 C 0.090 3.910 27 O -0.200 6.200 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.234 0.766 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.276 6.634 24.415 26.067 hybrid contribution -0.682 0.900 -1.003 1.510 sum -6.958 7.534 23.411 25.559 Atomic orbital electron populations 1.21771 0.95223 1.01237 1.00242 1.20914 0.95510 0.95878 0.94948 1.21775 1.00651 0.95841 1.00253 1.19096 0.96418 0.95255 0.89408 1.21164 1.31297 1.12058 0.90480 0.92251 1.25022 0.95332 0.95072 0.99124 1.69959 1.36877 1.22966 1.23490 0.86638 0.79155 0.79406 0.83045 1.20773 1.21342 1.19957 1.21695 0.99117 0.96087 0.82402 1.46060 1.53388 1.32135 1.05278 1.19843 0.81260 0.85027 0.84012 1.90748 1.36734 1.25577 1.86421 1.22277 0.94173 0.97518 0.84501 0.88565 1.22222 0.93439 1.02950 1.00162 1.20493 0.99238 1.00344 0.91198 1.19857 0.95170 1.05165 0.96256 1.20889 0.99562 0.98586 0.91232 1.21019 0.95666 1.02153 0.98490 1.20939 0.95826 0.97342 0.96507 1.20650 1.00745 1.04747 0.90329 1.18788 0.91540 0.95450 0.85226 1.86094 1.58340 1.64282 1.11315 0.95312 0.91329 0.93280 0.93271 0.91327 0.95296 0.96288 0.96281 0.93004 0.91550 0.91550 0.76583 0.88856 0.89580 0.89453 0.90012 0.85819 0.85923 0.85404 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.13 2.20 4.56 -4.05 -0.02 2.19 16 14 N -0.72 -9.79 4.92 -60.30 -0.30 -10.09 16 15 C 0.52 7.72 7.18 -10.99 -0.08 7.65 16 16 O -0.52 -10.26 16.52 -14.19 -0.23 -10.50 16 17 C 0.08 0.88 3.21 -27.68 -0.09 0.79 16 18 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 19 C -0.15 -1.35 5.46 -26.49 -0.14 -1.50 16 20 C -0.08 -0.57 5.86 -27.82 -0.16 -0.74 16 21 C -0.16 -1.59 5.75 -104.44 -0.60 -2.19 16 22 C -0.08 -0.69 9.67 -39.53 -0.38 -1.07 16 23 C -0.16 -1.21 10.04 -39.61 -0.40 -1.61 16 24 C -0.09 -0.74 10.04 -39.66 -0.40 -1.14 16 25 C -0.15 -1.55 9.94 -39.34 -0.39 -1.94 16 26 C 0.14 1.61 6.47 -39.19 -0.25 1.36 16 27 O -0.29 -4.04 9.47 -38.99 -0.37 -4.41 16 28 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 33 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 4.36 6.01 -40.82 -0.25 4.12 16 40 H 0.09 0.67 7.97 -51.92 -0.41 0.25 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -32.31 375.59 -9.81 -42.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.41 Total: 1.34 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.88 Total: -14.64 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.44 Total: -35.48 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.60 Total: -14.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.31 -9.81 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412332897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.289 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds