Wall clock time and date at job start Tue Mar 31 2020 11:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99375 * 2 1 3 5 5 C 1.50701 * 109.47211 * 300.00664 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.52997 * 109.47546 * 239.99601 * 2 1 3 14 14 N 1.46506 * 109.46748 * 59.99983 * 13 2 1 15 15 C 1.34775 * 119.99877 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99925 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00069 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.54952 * 34.27189 * 17 15 14 19 19 C 1.53002 * 117.49626 * 248.60420 * 17 15 14 20 20 C 1.52998 * 59.99945 * 252.50780 * 19 17 15 21 21 H 1.09005 * 117.49473 * 107.48830 * 20 19 17 22 22 C 1.50703 * 117.50198 * 252.50878 * 20 19 17 23 23 C 1.38285 * 119.96627 * 8.35147 * 22 20 19 24 24 C 1.38248 * 120.10952 * 179.72590 * 23 22 20 25 25 C 1.38173 * 120.05226 * 0.54685 * 24 23 22 26 26 C 1.38705 * 119.94150 * 359.72457 * 25 24 23 27 27 O 1.35905 * 120.05257 * 179.97438 * 26 25 24 28 28 C 1.38114 * 119.97299 * 188.62309 * 22 20 19 29 29 H 1.09005 * 109.47428 * 300.00019 * 1 2 3 30 30 H 1.09004 * 109.47351 * 60.00373 * 1 2 3 31 31 H 1.09006 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46658 * 300.00052 * 3 2 1 34 34 H 1.08996 * 109.47069 * 59.99431 * 3 2 1 35 35 H 1.09000 * 109.47211 * 179.97438 * 4 2 1 36 36 H 1.09007 * 109.46376 * 60.00233 * 4 2 1 37 37 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47672 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.47443 * 300.00194 * 13 2 1 40 40 H 0.97002 * 120.00073 * 359.97438 * 14 13 2 41 41 H 1.09001 * 117.49986 * 359.97438 * 19 17 15 42 42 H 1.08995 * 117.49722 * 144.99739 * 19 17 15 43 43 H 1.08001 * 119.95183 * 359.97438 * 23 22 20 44 44 H 1.08000 * 119.97579 * 180.25497 * 24 23 22 45 45 H 1.07999 * 120.02584 * 179.70987 * 25 24 23 46 46 H 0.96695 * 113.99857 * 270.02675 * 27 26 25 47 47 H 1.07996 * 120.03422 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5375 -0.0107 2.4798 6 1 0.9169 0.8676 2.3806 7 6 1.8754 -0.4783 3.7320 8 7 2.6314 -1.5476 3.8528 9 14 1.2590 0.4068 5.2571 10 1 0.4334 1.5730 4.8529 11 1 0.4367 -0.5239 6.0713 12 1 2.4173 0.8753 6.0597 13 6 2.0400 -0.7213 -1.2491 14 7 1.5516 -0.0307 -2.4454 15 6 1.8769 -0.4915 -3.6694 16 8 2.5742 -1.4776 -3.7806 17 6 1.3750 0.2192 -4.9000 18 1 1.2882 1.3024 -4.8147 19 6 0.3407 -0.5068 -5.7625 20 6 1.7792 -0.3527 -6.2603 21 1 2.4081 -1.2430 -6.2652 22 6 2.0271 0.6247 -7.3802 23 6 1.0126 1.4649 -7.8010 24 6 1.2384 2.3667 -8.8243 25 6 2.4757 2.4225 -9.4368 26 6 3.4932 1.5769 -9.0203 27 8 4.7109 1.6295 -9.6215 28 6 3.2657 0.6767 -7.9892 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 3.1300 -0.7215 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 2.8694 -1.8764 4.7337 38 1 3.1299 -0.7209 -1.2494 39 1 1.6767 -1.7490 -1.2492 40 1 0.9936 0.7577 -2.3564 41 1 0.0235 -1.4986 -5.4402 42 1 -0.4266 0.0988 -6.2447 43 1 0.0433 1.4195 -7.3268 44 1 0.4458 3.0247 -9.1484 45 1 2.6503 3.1239 -10.2393 46 1 4.7998 1.0393 -10.3822 47 1 4.0565 0.0175 -7.6630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412340690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:47 Heat of formation + Delta-G solvation = -50.486555 kcal Electronic energy + Delta-G solvation = -25503.494392 eV Core-core repulsion = 21844.385411 eV Total energy + Delta-G solvation = -3659.108981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53765 -39.64668 -37.92335 -37.03053 -35.80772 -33.59751 -32.09039 -31.26775 -29.88257 -27.27342 -26.64444 -26.52539 -24.40514 -23.94175 -22.90226 -22.40934 -20.94291 -20.01688 -18.32892 -18.28730 -17.30144 -16.80379 -16.34468 -15.96815 -15.58518 -15.36980 -15.17663 -14.66839 -14.50640 -14.07015 -13.94522 -13.52463 -13.18050 -12.94849 -12.86155 -12.74696 -12.37850 -12.19116 -12.09353 -12.03914 -11.89532 -11.18989 -11.04335 -10.99102 -10.88952 -10.84565 -10.66305 -10.62092 -10.41929 -10.25320 -9.89394 -9.82199 -9.20626 -9.11591 -8.93731 -8.84414 -8.73811 -8.37244 -6.00969 -4.02294 0.84814 0.95657 2.57545 3.13880 3.29403 3.35539 3.37888 3.40351 3.79245 3.83856 4.32210 4.44406 4.48898 4.54948 4.66776 4.76011 4.78839 4.98831 5.03878 5.21452 5.34557 5.38076 5.49518 5.52103 5.59864 5.61075 5.70525 5.74614 5.81253 6.04104 6.07515 6.15671 6.21112 6.25559 6.27286 6.37777 6.45101 6.55276 6.61699 6.75208 7.04748 7.06086 7.11298 7.29555 7.62972 7.73458 7.74977 7.97781 8.38068 8.42191 9.02714 9.60939 11.10501 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.002048 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.181932 B =13665.661875 C =13726.957111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.536 3.464 16 O -0.546 6.546 17 C -0.174 4.174 18 H 0.124 0.876 19 C -0.143 4.143 20 C -0.088 4.088 21 H 0.128 0.872 22 C -0.032 4.032 23 C -0.129 4.129 24 C -0.100 4.100 25 C -0.151 4.151 26 C 0.107 3.893 27 O -0.499 6.499 28 C -0.135 4.135 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.390 0.610 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 6.758 -27.155 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.321 3.679 16 O -0.424 6.424 17 C -0.195 4.195 18 H 0.142 0.858 19 C -0.181 4.181 20 C -0.107 4.107 21 H 0.146 0.854 22 C -0.033 4.033 23 C -0.147 4.147 24 C -0.119 4.119 25 C -0.170 4.170 26 C 0.062 3.938 27 O -0.310 6.310 28 C -0.153 4.153 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.235 0.765 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.246 0.754 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.893 6.349 -26.632 27.653 hybrid contribution -0.513 0.528 0.700 1.016 sum -4.406 6.877 -25.931 27.187 Atomic orbital electron populations 1.21764 0.95259 1.01164 1.00267 1.20901 0.95483 0.95854 0.95026 1.21767 1.00567 0.95891 1.00252 1.19101 0.96374 0.95234 0.89502 1.21215 1.31039 1.12102 0.90491 0.92194 1.25024 0.95330 0.95113 0.99129 1.69973 1.36934 1.23113 1.23339 0.86585 0.78577 0.79683 0.83425 1.19805 1.21139 1.21138 1.21650 0.98940 0.96013 0.82879 1.46125 1.52864 1.31973 1.05650 1.19536 0.80245 0.84156 0.83924 1.90694 1.38227 1.26640 1.86799 1.22382 1.06172 1.00427 0.90526 0.85800 1.23134 0.91741 1.02359 1.00822 1.21068 0.99247 0.99736 0.90608 0.85369 1.19010 0.93156 0.95748 0.95354 1.21123 0.99325 0.96275 0.97992 1.21010 0.96625 0.98255 0.95963 1.21435 0.92931 1.00848 1.01756 1.18442 0.84714 0.95902 0.94695 1.84841 1.30251 1.67093 1.48776 1.21297 0.97129 0.99423 0.97471 0.91407 0.95209 0.93364 0.93356 0.95244 0.91396 0.96334 0.96343 0.93088 0.91793 0.91797 0.76547 0.87539 0.87402 0.85422 0.85463 0.85502 0.75399 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 14 N -0.72 -10.29 4.96 -60.29 -0.30 -10.59 16 15 C 0.54 7.88 7.61 -10.98 -0.08 7.79 16 16 O -0.55 -10.15 16.26 5.56 0.09 -10.06 16 17 C -0.17 -1.84 5.82 -91.77 -0.53 -2.38 16 18 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.14 -1.23 9.56 -26.73 -0.26 -1.48 16 20 C -0.09 -0.89 5.55 -91.77 -0.51 -1.40 16 21 H 0.13 1.48 7.67 -51.93 -0.40 1.08 16 22 C -0.03 -0.30 5.61 -104.65 -0.59 -0.89 16 23 C -0.13 -1.01 9.30 -39.56 -0.37 -1.38 16 24 C -0.10 -0.72 10.04 -39.60 -0.40 -1.12 16 25 C -0.15 -1.20 9.99 -39.43 -0.39 -1.59 16 26 C 0.11 0.97 6.70 -39.22 -0.26 0.71 16 27 O -0.50 -4.12 13.50 -19.44 -0.26 -4.39 16 28 C -0.13 -1.31 9.68 -39.44 -0.38 -1.69 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 34 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.40 4.83 6.16 -40.82 -0.25 4.58 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 0.67 6.17 -51.93 -0.32 0.35 16 43 H 0.13 0.77 6.01 -52.49 -0.32 0.45 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.39 1.26 9.06 45.56 0.41 1.68 16 47 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -32.95 382.41 -9.10 -42.05 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.36 Total: 4.77 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.75 Total: -18.04 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.44 Total: -36.24 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.17 Total: -14.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.95 -9.10 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412340690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.435 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds