Wall clock time and date at job start Tue Mar 31 2020 11:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99375 * 2 1 3 5 5 C 1.50701 * 109.47211 * 300.00664 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.52997 * 109.47546 * 239.99601 * 2 1 3 14 14 N 1.46506 * 109.46748 * 59.99983 * 13 2 1 15 15 C 1.34775 * 119.99877 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99925 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00069 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.54952 * 34.27189 * 17 15 14 19 19 C 1.53002 * 117.49626 * 248.60420 * 17 15 14 20 20 C 1.52998 * 59.99945 * 252.50780 * 19 17 15 21 21 H 1.09005 * 117.49473 * 107.48830 * 20 19 17 22 22 C 1.50703 * 117.50198 * 252.50878 * 20 19 17 23 23 C 1.38285 * 119.96627 * 8.35147 * 22 20 19 24 24 C 1.38248 * 120.10952 * 179.72590 * 23 22 20 25 25 C 1.38173 * 120.05226 * 0.54685 * 24 23 22 26 26 C 1.38705 * 119.94150 * 359.72457 * 25 24 23 27 27 O 1.35905 * 120.05257 * 179.97438 * 26 25 24 28 28 C 1.38114 * 119.97299 * 188.62309 * 22 20 19 29 29 H 1.09005 * 109.47428 * 300.00019 * 1 2 3 30 30 H 1.09004 * 109.47351 * 60.00373 * 1 2 3 31 31 H 1.09006 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46658 * 300.00052 * 3 2 1 34 34 H 1.08996 * 109.47069 * 59.99431 * 3 2 1 35 35 H 1.09000 * 109.47211 * 179.97438 * 4 2 1 36 36 H 1.09007 * 109.46376 * 60.00233 * 4 2 1 37 37 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47672 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.47443 * 300.00194 * 13 2 1 40 40 H 0.97002 * 120.00073 * 359.97438 * 14 13 2 41 41 H 1.09001 * 117.49986 * 359.97438 * 19 17 15 42 42 H 1.08995 * 117.49722 * 144.99739 * 19 17 15 43 43 H 1.08001 * 119.95183 * 359.97438 * 23 22 20 44 44 H 1.08000 * 119.97579 * 180.25497 * 24 23 22 45 45 H 1.07999 * 120.02584 * 179.70987 * 25 24 23 46 46 H 0.96695 * 113.99857 * 270.02675 * 27 26 25 47 47 H 1.07996 * 120.03422 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5375 -0.0107 2.4798 6 1 0.9169 0.8676 2.3806 7 6 1.8754 -0.4783 3.7320 8 7 2.6314 -1.5476 3.8528 9 14 1.2590 0.4068 5.2571 10 1 0.4334 1.5730 4.8529 11 1 0.4367 -0.5239 6.0713 12 1 2.4173 0.8753 6.0597 13 6 2.0400 -0.7213 -1.2491 14 7 1.5516 -0.0307 -2.4454 15 6 1.8769 -0.4915 -3.6694 16 8 2.5742 -1.4776 -3.7806 17 6 1.3750 0.2192 -4.9000 18 1 1.2882 1.3024 -4.8147 19 6 0.3407 -0.5068 -5.7625 20 6 1.7792 -0.3527 -6.2603 21 1 2.4081 -1.2430 -6.2652 22 6 2.0271 0.6247 -7.3802 23 6 1.0126 1.4649 -7.8010 24 6 1.2384 2.3667 -8.8243 25 6 2.4757 2.4225 -9.4368 26 6 3.4932 1.5769 -9.0203 27 8 4.7109 1.6295 -9.6215 28 6 3.2657 0.6767 -7.9892 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 3.1300 -0.7215 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 2.8694 -1.8764 4.7337 38 1 3.1299 -0.7209 -1.2494 39 1 1.6767 -1.7490 -1.2492 40 1 0.9936 0.7577 -2.3564 41 1 0.0235 -1.4986 -5.4402 42 1 -0.4266 0.0988 -6.2447 43 1 0.0433 1.4195 -7.3268 44 1 0.4458 3.0247 -9.1484 45 1 2.6503 3.1239 -10.2393 46 1 4.7998 1.0393 -10.3822 47 1 4.0565 0.0175 -7.6630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412340690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:46 Heat of formation + Delta-G solvation = -71.649253 kcal Electronic energy + Delta-G solvation = -25504.412076 eV Core-core repulsion = 21844.385411 eV Total energy + Delta-G solvation = -3660.026665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40947 -40.56985 -39.02550 -38.15492 -36.59114 -35.24625 -33.91997 -31.89416 -30.50183 -29.18037 -28.03887 -27.96122 -25.65530 -24.79825 -24.09368 -23.38462 -21.67645 -21.15252 -19.79866 -18.94343 -18.39967 -18.29574 -17.47018 -16.98295 -16.51240 -16.45124 -16.37639 -16.06334 -15.59395 -15.25594 -14.93202 -14.78552 -14.52014 -14.36506 -13.94771 -13.81629 -13.65649 -13.56987 -13.07324 -12.90023 -12.70093 -12.67079 -12.61245 -12.52659 -12.34717 -12.23708 -11.95963 -11.75044 -11.56192 -11.54567 -11.32130 -11.16824 -10.90288 -10.77586 -10.52889 -10.08501 -9.74398 -9.47130 -8.14536 -6.22446 0.25063 0.35471 1.41667 1.42667 1.49069 1.54517 2.14852 2.44405 2.56369 3.03518 3.19945 3.23765 3.60043 3.71022 3.86049 3.93332 3.98740 4.06823 4.10159 4.19983 4.22223 4.24379 4.36738 4.64618 4.68215 4.71092 4.73530 4.80068 4.93046 4.96366 5.00485 5.03391 5.10028 5.11972 5.12495 5.39528 5.46324 5.47417 5.49319 5.49751 5.53342 5.56816 5.62993 5.79632 5.89541 5.92425 6.29582 6.58446 6.84677 6.93074 7.25387 7.45417 8.98211 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.002048 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.181932 B =13665.661875 C =13726.957111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.141 3.859 14 N -0.703 5.703 15 C 0.532 3.468 16 O -0.593 6.593 17 C -0.177 4.177 18 H 0.151 0.849 19 C -0.119 4.119 20 C -0.095 4.095 21 H 0.102 0.898 22 C -0.041 4.041 23 C -0.128 4.128 24 C -0.097 4.097 25 C -0.157 4.157 26 C 0.096 3.904 27 O -0.515 6.515 28 C -0.159 4.159 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.057 0.943 35 H -0.016 1.016 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.415 0.585 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.143 0.857 46 H 0.409 0.591 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 9.864 -28.859 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.017 3.983 14 N -0.355 5.355 15 C 0.320 3.680 16 O -0.474 6.474 17 C -0.197 4.197 18 H 0.169 0.831 19 C -0.156 4.156 20 C -0.114 4.114 21 H 0.120 0.880 22 C -0.041 4.041 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.175 4.175 26 C 0.052 3.948 27 O -0.328 6.328 28 C -0.178 4.178 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.002 0.998 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.253 0.747 41 H 0.117 0.883 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.175 0.825 45 H 0.160 0.840 46 H 0.268 0.732 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.806 9.487 -28.364 30.673 hybrid contribution 0.454 -0.497 1.136 1.320 sum -6.352 8.990 -27.228 29.369 Atomic orbital electron populations 1.21698 0.93345 1.01040 1.01806 1.20698 0.96881 0.96213 0.92616 1.21706 0.99808 0.94688 1.01771 1.18991 0.94192 0.94250 0.92484 1.21619 1.30226 1.12089 0.90979 0.90787 1.25984 0.95708 0.95936 1.02845 1.70132 1.38802 1.25102 1.24023 0.85464 0.78008 0.78833 0.79136 1.17900 1.21060 1.21160 1.21213 0.97589 0.95430 0.84074 1.45899 1.52857 1.32151 1.04572 1.20302 0.79185 0.83569 0.84929 1.90680 1.40293 1.28942 1.87473 1.22350 1.07647 1.01358 0.88378 0.83135 1.23292 0.91443 1.02231 0.98659 1.20962 1.00384 0.99228 0.90786 0.88006 1.18991 0.93514 0.96254 0.95333 1.21386 0.99685 0.95538 0.97982 1.21382 0.96919 0.98021 0.95112 1.21697 0.92973 1.00640 1.02178 1.18596 0.85257 0.96181 0.94790 1.84780 1.30332 1.67874 1.49825 1.21363 0.97504 1.00250 0.98652 0.92498 0.90913 0.94399 0.94657 0.91035 0.92438 0.99777 0.99597 0.93202 0.93972 0.93610 0.74659 0.88268 0.83812 0.82939 0.82543 0.83963 0.73227 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.04 1.96 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.35 7.65 25.60 0.20 -27.16 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.14 5.09 4.56 86.38 0.39 5.48 16 14 N -0.70 -19.18 4.96 -463.06 -2.30 -21.48 16 15 C 0.53 15.29 7.61 87.66 0.67 15.95 16 16 O -0.59 -22.82 16.26 -3.04 -0.05 -22.87 16 17 C -0.18 -3.33 5.82 -11.54 -0.07 -3.40 16 18 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 19 C -0.12 -1.69 9.56 30.59 0.29 -1.40 16 20 C -0.09 -1.82 5.55 -11.54 -0.06 -1.88 16 21 H 0.10 2.49 7.67 -2.38 -0.02 2.47 16 22 C -0.04 -0.70 5.61 -19.88 -0.11 -0.81 16 23 C -0.13 -1.54 9.30 22.28 0.21 -1.34 16 24 C -0.10 -1.03 10.04 22.26 0.22 -0.81 16 25 C -0.16 -2.10 9.99 22.37 0.22 -1.88 16 26 C 0.10 1.67 6.70 22.51 0.15 1.82 16 27 O -0.51 -8.31 13.50 -92.48 -1.25 -9.56 16 28 C -0.16 -3.11 9.68 22.36 0.22 -2.89 16 29 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 30 H 0.07 1.75 6.86 -2.38 -0.02 1.74 16 31 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.78 6.86 -2.38 -0.02 1.76 16 34 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 36 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.42 8.54 6.16 -92.71 -0.57 7.97 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.14 1.02 6.17 -2.39 -0.01 1.00 16 43 H 0.15 1.00 6.01 -2.91 -0.02 0.98 16 44 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 45 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 46 H 0.41 2.51 9.06 -74.06 -0.67 1.84 16 47 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -75.78 382.41 2.51 -73.27 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.25 Total: 17.69 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 4.04 Total: -25.56 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.01 Total: -78.61 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.30 Total: -32.42 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -75.78 2.51 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412340690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.620 kcal (2) G-P(sol) polarization free energy of solvation -75.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds