Wall clock time and date at job start Tue Mar 31 2020 12:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47050 * 2 1 4 4 C 1.53003 * 109.46948 * 119.99730 * 2 1 3 5 5 N 1.46499 * 109.46762 * 184.99841 * 4 2 1 6 6 C 1.34781 * 119.99825 * 180.02562 * 5 4 2 7 7 O 1.21542 * 120.00087 * 359.97438 * 6 5 4 8 8 C 1.47890 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39913 * 120.02810 * 359.96967 * 8 6 5 10 10 C 1.38333 * 120.36039 * 180.02562 * 9 8 6 11 11 C 1.37756 * 120.40995 * 359.96274 * 10 9 8 12 12 C 1.40753 * 120.03756 * 0.04042 * 11 10 9 13 13 C 1.41435 * 120.17333 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00291 * 24.39761 * 13 12 11 15 15 C 1.39938 * 119.99544 * 204.40500 * 13 12 11 16 16 N 1.30830 * 120.00373 * 17.83908 * 15 13 12 17 17 Si 1.86800 * 119.99826 * 197.83568 * 15 13 12 18 18 H 1.48501 * 109.47279 * 59.99836 * 17 15 13 19 19 H 1.48504 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47104 * 300.00046 * 17 15 13 21 21 C 1.38993 * 120.02183 * 179.97438 * 8 6 5 22 22 O 1.42898 * 109.47068 * 240.00116 * 2 1 3 23 23 C 1.42900 * 114.00210 * 60.00033 * 22 2 1 24 24 C 1.52992 * 109.47057 * 180.02562 * 23 22 2 25 25 C 1.53006 * 117.49531 * 243.62123 * 24 23 22 26 26 C 1.53007 * 117.49935 * 174.99845 * 24 23 22 27 27 H 1.09000 * 109.47201 * 299.99979 * 1 2 3 28 28 H 1.08997 * 109.47450 * 60.00023 * 1 2 3 29 29 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47463 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47315 * 299.99848 * 3 2 1 32 32 H 1.08997 * 109.47529 * 60.00218 * 3 2 1 33 33 H 1.08998 * 109.46910 * 65.00320 * 4 2 1 34 34 H 1.08999 * 109.47491 * 304.99727 * 4 2 1 35 35 H 0.97004 * 120.00307 * 0.02562 * 5 4 2 36 36 H 1.08005 * 119.82032 * 0.02924 * 9 8 6 37 37 H 1.07998 * 119.79353 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.97966 * 180.02562 * 11 10 9 39 39 H 0.96995 * 119.99719 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.20452 * 359.69875 * 21 8 6 41 41 H 1.08999 * 109.46935 * 299.99862 * 23 22 2 42 42 H 1.08997 * 109.47137 * 59.99964 * 23 22 2 43 43 H 1.09000 * 115.55443 * 29.32262 * 24 23 22 44 44 H 1.08996 * 117.49862 * 359.97438 * 25 24 23 45 45 H 1.09003 * 117.49571 * 145.02256 * 25 24 23 46 46 H 1.08995 * 117.49851 * 214.97634 * 26 24 23 47 47 H 1.09000 * 117.49300 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.6178 1.3110 6 6 4.1730 -1.1834 2.3326 7 8 3.5686 -1.7788 3.2029 8 6 5.6469 -1.0786 2.3951 9 6 6.3431 -0.3930 1.3937 10 6 7.7217 -0.2911 1.4451 11 6 8.4250 -0.8626 2.4826 12 6 7.7418 -1.5563 3.4990 13 6 8.4610 -2.1446 4.5654 14 1 9.4338 -1.7620 4.8366 15 6 7.9120 -3.2226 5.2688 16 7 6.9268 -3.9091 4.7494 17 14 8.5859 -3.6814 6.9495 18 1 8.4300 -2.5316 7.8762 19 1 7.8391 -4.8502 7.4801 20 1 10.0249 -4.0277 6.8282 21 6 6.3415 -1.6612 3.4487 22 8 2.0063 -0.6736 -1.1668 23 6 1.5846 -0.0773 -2.3951 24 6 2.1495 -0.8772 -3.5706 25 6 3.1359 -0.1665 -4.4995 26 6 1.7141 -0.4665 -4.9787 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7516 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1370 35 1 3.9823 -0.1424 0.6165 36 1 5.8013 0.0593 0.5762 37 1 8.2500 0.2399 0.6670 38 1 9.5012 -0.7785 2.5160 39 1 6.5462 -4.6561 5.2372 40 1 5.8078 -2.1873 4.2264 41 1 0.4958 -0.0789 -2.4448 42 1 1.9491 0.9487 -2.4448 43 1 2.3099 -1.9389 -3.3830 44 1 3.3820 0.8709 -4.2734 45 1 3.9456 -0.7607 -4.9232 46 1 1.5884 -1.2580 -5.7175 47 1 1.0255 0.3738 -5.0675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412620350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:44 Heat of formation + Delta-G solvation = -48.418417 kcal Electronic energy + Delta-G solvation = -26269.043343 eV Core-core repulsion = 22610.024042 eV Total energy + Delta-G solvation = -3659.019300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.82438 -38.77885 -37.34417 -36.83456 -34.42991 -33.69023 -32.19524 -30.09734 -29.38783 -27.79138 -27.59127 -26.04451 -25.11115 -22.64712 -22.20366 -20.96633 -20.81380 -20.20704 -19.41734 -17.75224 -16.88438 -16.49195 -15.93135 -15.64876 -15.27924 -14.93551 -14.70557 -14.48149 -14.42877 -13.90171 -13.70339 -13.38170 -13.19198 -13.06022 -12.57516 -12.42897 -12.35102 -12.27915 -12.11055 -11.84086 -11.63773 -11.60291 -11.44374 -11.11991 -11.04295 -10.78404 -10.70948 -10.64198 -10.47371 -10.39820 -9.98845 -9.65286 -9.58906 -9.17433 -8.95793 -8.56739 -7.58110 -7.47880 -6.76313 -4.37680 2.26969 2.85914 3.09636 3.11427 3.19677 3.23724 3.62571 3.76417 3.92577 3.95898 4.44805 4.58881 4.62286 4.67791 4.72187 4.78063 4.80303 5.06479 5.18764 5.27717 5.33892 5.39076 5.43057 5.53684 5.56322 5.63178 5.64214 5.75037 5.81364 5.83146 5.83499 5.93618 6.01397 6.08275 6.16193 6.32748 6.75893 6.92218 7.02611 7.06412 7.12595 7.25383 7.42515 7.74941 7.81015 7.97171 8.15954 8.24349 8.54561 8.83876 8.87691 9.02706 10.18340 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002828 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.563041 B = 9900.227062 C =10641.092403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 C -0.180 4.180 4 C 0.138 3.862 5 N -0.730 5.730 6 C 0.563 3.437 7 O -0.549 6.549 8 C -0.127 4.127 9 C -0.216 4.216 10 C -0.098 4.098 11 C -0.212 4.212 12 C 0.099 3.901 13 C -0.461 4.461 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.783 5.783 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.093 4.093 22 O -0.366 6.366 23 C 0.088 3.912 24 C -0.152 4.152 25 C -0.176 4.176 26 C -0.176 4.176 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.401 0.599 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.134 0.866 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 8.354 -13.613 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.063 3.937 3 C -0.238 4.238 4 C 0.014 3.986 5 N -0.385 5.385 6 C 0.354 3.646 7 O -0.428 6.428 8 C -0.130 4.130 9 C -0.236 4.236 10 C -0.116 4.116 11 C -0.232 4.232 12 C 0.096 3.904 13 C -0.490 4.490 14 H 0.099 0.901 15 C -0.146 4.146 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.113 4.113 22 O -0.286 6.286 23 C 0.011 3.989 24 C -0.170 4.170 25 C -0.213 4.213 26 C -0.213 4.213 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.260 7.536 -12.933 19.349 hybrid contribution 0.319 0.143 0.187 0.396 sum -11.942 7.679 -12.746 19.080 Atomic orbital electron populations 1.22355 0.94845 1.03340 1.02829 1.21737 0.93604 0.92228 0.86167 1.22439 1.02699 0.95906 1.02714 1.21200 0.81834 1.00995 0.94567 1.45894 1.06331 1.58499 1.27751 1.18840 0.88345 0.77116 0.80332 1.90686 1.70359 1.42572 1.39133 1.19471 0.90214 1.04221 0.99073 1.20338 0.94249 1.08628 1.00414 1.20426 0.93661 0.99843 0.97696 1.21088 0.97819 1.07812 0.96524 1.17593 0.91444 0.90055 0.91295 1.19549 1.03996 1.12701 1.12746 0.90145 1.25965 0.94184 0.95253 0.99201 1.69790 1.20047 1.14194 1.36675 0.86332 0.79720 0.78669 0.81820 1.18738 1.20241 1.18993 1.21630 0.93938 0.98498 0.97202 1.88053 1.74370 1.53585 1.12578 1.22030 0.97892 0.95565 0.83380 1.22145 1.04102 1.00900 0.89853 1.23069 0.93058 1.01588 1.03605 1.22965 0.98305 1.03546 0.96528 0.91036 0.91855 0.91254 0.91277 0.92085 0.90990 0.91023 0.90430 0.76188 0.89331 0.88971 0.88670 0.90395 0.84863 0.92803 0.92949 0.86808 0.88689 0.88520 0.88490 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.25 37.16 0.31 -1.24 16 2 C 0.10 1.14 0.80 -90.62 -0.07 1.07 16 3 C -0.18 -1.77 8.02 37.16 0.30 -1.47 16 4 C 0.14 2.02 4.84 -4.04 -0.02 2.00 16 5 N -0.73 -12.76 5.14 -61.24 -0.31 -13.07 16 6 C 0.56 12.75 7.77 -12.31 -0.10 12.65 16 7 O -0.55 -14.12 16.33 5.33 0.09 -14.03 16 8 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 9 C -0.22 -4.68 9.55 -38.92 -0.37 -5.06 16 10 C -0.10 -2.14 10.01 -39.72 -0.40 -2.53 16 11 C -0.21 -5.13 9.78 -38.81 -0.38 -5.51 16 12 C 0.10 2.65 5.57 -106.87 -0.60 2.06 16 13 C -0.46 -12.27 9.05 -37.73 -0.34 -12.62 16 14 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 15 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 16 N -0.78 -21.10 10.96 55.55 0.61 -20.49 16 17 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.09 -2.52 8.23 -38.44 -0.32 -2.84 16 22 O -0.37 -4.56 9.93 -35.23 -0.35 -4.91 16 23 C 0.09 0.84 5.42 37.15 0.20 1.04 16 24 C -0.15 -1.44 6.06 -90.62 -0.55 -1.99 16 25 C -0.18 -1.49 10.18 -26.72 -0.27 -1.76 16 26 C -0.18 -1.31 10.25 -26.72 -0.27 -1.58 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.75 6.58 -51.93 -0.34 0.41 16 31 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 6.39 5.00 -40.82 -0.20 6.19 16 36 H 0.09 1.62 6.38 -52.48 -0.33 1.29 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 40 H 0.13 3.91 5.75 -52.48 -0.30 3.61 16 41 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 42 H 0.05 0.46 6.15 -51.93 -0.32 0.14 16 43 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -30.55 381.06 -9.97 -40.52 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.13 Total: 11.91 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -3.58 Total: -19.67 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.29 Total: -33.56 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.26 Total: -18.94 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.55 -9.97 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412620350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.895 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds