Wall clock time and date at job start Tue Mar 31 2020 12:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47050 * 2 1 4 4 C 1.53003 * 109.46948 * 119.99730 * 2 1 3 5 5 N 1.46499 * 109.46762 * 184.99841 * 4 2 1 6 6 C 1.34781 * 119.99825 * 180.02562 * 5 4 2 7 7 O 1.21542 * 120.00087 * 359.97438 * 6 5 4 8 8 C 1.47890 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39913 * 120.02810 * 359.96967 * 8 6 5 10 10 C 1.38333 * 120.36039 * 180.02562 * 9 8 6 11 11 C 1.37756 * 120.40995 * 359.96274 * 10 9 8 12 12 C 1.40753 * 120.03756 * 0.04042 * 11 10 9 13 13 C 1.41435 * 120.17333 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00291 * 24.39761 * 13 12 11 15 15 C 1.39938 * 119.99544 * 204.40500 * 13 12 11 16 16 N 1.30830 * 120.00373 * 17.83908 * 15 13 12 17 17 Si 1.86800 * 119.99826 * 197.83568 * 15 13 12 18 18 H 1.48501 * 109.47279 * 59.99836 * 17 15 13 19 19 H 1.48504 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47104 * 300.00046 * 17 15 13 21 21 C 1.38993 * 120.02183 * 179.97438 * 8 6 5 22 22 O 1.42898 * 109.47068 * 240.00116 * 2 1 3 23 23 C 1.42900 * 114.00210 * 60.00033 * 22 2 1 24 24 C 1.52992 * 109.47057 * 180.02562 * 23 22 2 25 25 C 1.53006 * 117.49531 * 243.62123 * 24 23 22 26 26 C 1.53007 * 117.49935 * 174.99845 * 24 23 22 27 27 H 1.09000 * 109.47201 * 299.99979 * 1 2 3 28 28 H 1.08997 * 109.47450 * 60.00023 * 1 2 3 29 29 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47463 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47315 * 299.99848 * 3 2 1 32 32 H 1.08997 * 109.47529 * 60.00218 * 3 2 1 33 33 H 1.08998 * 109.46910 * 65.00320 * 4 2 1 34 34 H 1.08999 * 109.47491 * 304.99727 * 4 2 1 35 35 H 0.97004 * 120.00307 * 0.02562 * 5 4 2 36 36 H 1.08005 * 119.82032 * 0.02924 * 9 8 6 37 37 H 1.07998 * 119.79353 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.97966 * 180.02562 * 11 10 9 39 39 H 0.96995 * 119.99719 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.20452 * 359.69875 * 21 8 6 41 41 H 1.08999 * 109.46935 * 299.99862 * 23 22 2 42 42 H 1.08997 * 109.47137 * 59.99964 * 23 22 2 43 43 H 1.09000 * 115.55443 * 29.32262 * 24 23 22 44 44 H 1.08996 * 117.49862 * 359.97438 * 25 24 23 45 45 H 1.09003 * 117.49571 * 145.02256 * 25 24 23 46 46 H 1.08995 * 117.49851 * 214.97634 * 26 24 23 47 47 H 1.09000 * 117.49300 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.6178 1.3110 6 6 4.1730 -1.1834 2.3326 7 8 3.5686 -1.7788 3.2029 8 6 5.6469 -1.0786 2.3951 9 6 6.3431 -0.3930 1.3937 10 6 7.7217 -0.2911 1.4451 11 6 8.4250 -0.8626 2.4826 12 6 7.7418 -1.5563 3.4990 13 6 8.4610 -2.1446 4.5654 14 1 9.4338 -1.7620 4.8366 15 6 7.9120 -3.2226 5.2688 16 7 6.9268 -3.9091 4.7494 17 14 8.5859 -3.6814 6.9495 18 1 8.4300 -2.5316 7.8762 19 1 7.8391 -4.8502 7.4801 20 1 10.0249 -4.0277 6.8282 21 6 6.3415 -1.6612 3.4487 22 8 2.0063 -0.6736 -1.1668 23 6 1.5846 -0.0773 -2.3951 24 6 2.1495 -0.8772 -3.5706 25 6 3.1359 -0.1665 -4.4995 26 6 1.7141 -0.4665 -4.9787 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7516 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1370 35 1 3.9823 -0.1424 0.6165 36 1 5.8013 0.0593 0.5762 37 1 8.2500 0.2399 0.6670 38 1 9.5012 -0.7785 2.5160 39 1 6.5462 -4.6561 5.2372 40 1 5.8078 -2.1873 4.2264 41 1 0.4958 -0.0789 -2.4448 42 1 1.9491 0.9487 -2.4448 43 1 2.3099 -1.9389 -3.3830 44 1 3.3820 0.8709 -4.2734 45 1 3.9456 -0.7607 -4.9232 46 1 1.5884 -1.2580 -5.7175 47 1 1.0255 0.3738 -5.0675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412620350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:43 Heat of formation + Delta-G solvation = -65.750641 kcal Electronic energy + Delta-G solvation = -26269.794924 eV Core-core repulsion = 22610.024042 eV Total energy + Delta-G solvation = -3659.770882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13604 -40.09840 -38.80051 -37.96012 -35.83902 -35.51019 -33.38341 -31.87922 -31.27184 -28.62957 -28.34713 -27.45975 -26.80588 -23.91754 -23.23630 -22.79300 -21.62024 -21.28656 -20.97666 -19.52393 -18.18354 -17.62900 -17.17085 -17.01089 -16.70750 -16.43640 -16.03137 -15.98099 -15.47078 -15.25703 -15.01983 -14.61061 -14.49599 -14.29353 -14.13134 -14.00066 -13.62342 -13.41667 -12.94661 -12.93770 -12.86994 -12.79886 -12.52749 -12.46839 -12.36408 -12.25715 -12.18962 -11.90488 -11.58809 -11.50695 -11.31412 -11.13559 -11.06553 -10.79692 -10.33062 -10.14848 -9.47202 -9.38834 -8.66388 -6.38180 0.38144 1.01193 1.36118 1.48053 1.50962 2.09401 2.19241 2.25363 2.48277 2.78995 2.96675 3.57090 3.69952 3.82868 3.92218 3.96501 4.00195 4.04456 4.13045 4.37118 4.41301 4.48516 4.53602 4.58628 4.62092 4.64791 4.74177 4.76291 4.79623 4.85369 4.91479 4.97992 5.03232 5.08571 5.13260 5.19027 5.25712 5.27959 5.30852 5.32091 5.45202 5.52161 5.86319 5.92521 6.05152 6.28164 6.31984 6.50466 6.67736 6.87552 6.94708 7.30216 8.30265 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002828 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.563041 B = 9900.227062 C =10641.092403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 C -0.179 4.179 4 C 0.132 3.868 5 N -0.706 5.706 6 C 0.558 3.442 7 O -0.591 6.591 8 C -0.138 4.138 9 C -0.198 4.198 10 C -0.095 4.095 11 C -0.217 4.217 12 C 0.067 3.933 13 C -0.497 4.497 14 H 0.086 0.914 15 C 0.028 3.972 16 N -0.826 5.826 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.252 1.252 21 C -0.131 4.131 22 O -0.394 6.394 23 C 0.087 3.913 24 C -0.173 4.173 25 C -0.181 4.181 26 C -0.159 4.159 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.286 0.714 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 10.628 -15.760 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.069 3.931 3 C -0.236 4.236 4 C 0.009 3.991 5 N -0.359 5.359 6 C 0.348 3.652 7 O -0.472 6.472 8 C -0.142 4.142 9 C -0.218 4.218 10 C -0.112 4.112 11 C -0.237 4.237 12 C 0.065 3.935 13 C -0.526 4.526 14 H 0.104 0.896 15 C -0.187 4.187 16 N -0.451 5.451 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.175 1.175 21 C -0.152 4.152 22 O -0.314 6.314 23 C 0.012 3.988 24 C -0.191 4.191 25 C -0.218 4.218 26 C -0.196 4.196 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.660 9.848 -15.141 22.057 hybrid contribution 0.387 -0.473 0.638 0.883 sum -12.273 9.375 -14.503 21.186 Atomic orbital electron populations 1.22340 0.92793 1.03437 1.04440 1.21673 0.94973 0.92235 0.84253 1.22440 1.02003 0.94908 1.04261 1.21439 0.79768 1.00701 0.97236 1.45715 1.07686 1.56496 1.26034 1.18765 0.88042 0.77338 0.81069 1.90659 1.70906 1.44655 1.41029 1.19777 0.91445 1.03949 0.98981 1.20794 0.94667 1.06376 0.99957 1.20909 0.93793 0.98817 0.97724 1.21404 0.98806 1.07044 0.96423 1.17950 0.91650 0.91242 0.92643 1.19850 1.04719 1.13832 1.14248 0.89642 1.26893 0.94193 0.94726 1.02855 1.69898 1.21837 1.14998 1.38380 0.85225 0.79514 0.78351 0.76488 1.18402 1.19714 1.17541 1.21441 0.94470 1.00987 0.98262 1.88014 1.75041 1.54653 1.13706 1.22176 0.98748 0.95884 0.82038 1.22149 1.05897 1.00015 0.91087 1.23147 0.93571 1.01778 1.03334 1.23057 0.97726 1.03927 0.94892 0.89896 0.89762 0.91989 0.92326 0.89794 0.90269 0.92884 0.89919 0.74999 0.85236 0.84368 0.87207 0.90300 0.88298 0.91449 0.91669 0.88846 0.87920 0.88833 0.87867 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 8.25 71.98 0.59 -2.01 16 2 C 0.11 2.19 0.80 -10.80 -0.01 2.19 16 3 C -0.18 -2.95 8.02 71.98 0.58 -2.37 16 4 C 0.13 3.80 4.84 86.38 0.42 4.22 16 5 N -0.71 -24.25 5.14 -465.93 -2.40 -26.64 16 6 C 0.56 25.84 7.77 86.80 0.67 26.51 16 7 O -0.59 -31.91 16.33 -3.85 -0.06 -31.97 16 8 C -0.14 -6.82 5.87 -20.13 -0.12 -6.94 16 9 C -0.20 -8.16 9.55 22.70 0.22 -7.95 16 10 C -0.09 -3.86 10.01 22.18 0.22 -3.64 16 11 C -0.22 -10.35 9.78 22.77 0.22 -10.13 16 12 C 0.07 3.75 5.57 -21.32 -0.12 3.63 16 13 C -0.50 -27.54 9.05 23.47 0.21 -27.32 16 14 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 15 C 0.03 1.51 5.14 85.25 0.44 1.94 16 16 N -0.83 -47.17 10.96 21.83 0.24 -46.93 16 17 Si 0.98 40.27 29.59 68.60 2.03 42.30 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 21 C -0.13 -7.50 8.23 23.01 0.19 -7.31 16 22 O -0.39 -9.13 9.93 -148.98 -1.48 -10.61 16 23 C 0.09 1.45 5.42 71.98 0.39 1.84 16 24 C -0.17 -3.00 6.06 -10.79 -0.07 -3.07 16 25 C -0.18 -2.68 10.18 30.60 0.31 -2.37 16 26 C -0.16 -1.95 10.25 30.60 0.31 -1.64 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 0.94 6.54 -2.39 -0.02 0.92 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.09 6.58 -2.38 -0.02 1.07 16 31 H 0.08 1.02 6.54 -2.39 -0.02 1.00 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.41 12.28 5.00 -92.71 -0.46 11.82 16 36 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 37 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.29 15.12 8.30 -92.71 -0.77 14.35 16 40 H 0.10 6.28 5.75 -2.91 -0.02 6.26 16 41 H 0.07 0.92 6.42 -2.39 -0.02 0.90 16 42 H 0.07 0.90 6.15 -2.39 -0.01 0.89 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.24 381.06 3.31 -67.92 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.51 Total: 40.35 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 4.47 Total: -34.41 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -2.16 Total: -73.57 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.54 Total: -42.59 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -71.24 3.31 -67.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412620350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.174 kcal (2) G-P(sol) polarization free energy of solvation -71.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds