Wall clock time and date at job start Tue Mar 31 2020 12:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46717 * 2 1 4 4 C 1.52995 * 109.46902 * 119.99609 * 2 1 3 5 5 N 1.46502 * 109.46895 * 185.00025 * 4 2 1 6 6 C 1.34776 * 120.00188 * 180.02562 * 5 4 2 7 7 O 1.21593 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.47642 * 120.00404 * 180.02562 * 6 5 4 9 9 C 1.40009 * 119.89172 * 359.72630 * 8 6 5 10 10 C 1.36315 * 120.10651 * 179.75799 * 9 8 6 11 11 C 1.40893 * 119.89166 * 0.51486 * 10 9 8 12 12 C 1.41105 * 120.10362 * 179.71818 * 11 10 9 13 13 H 1.08000 * 119.99496 * 204.64152 * 12 11 10 14 14 C 1.40224 * 120.00495 * 24.64924 * 12 11 10 15 15 N 1.30650 * 119.99806 * 17.87108 * 14 12 11 16 16 Si 1.86795 * 120.00075 * 197.87704 * 14 12 11 17 17 H 1.48495 * 109.47266 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47280 * 119.99828 * 16 14 12 19 19 H 1.48496 * 109.46873 * 239.99385 * 16 14 12 20 20 C 1.40884 * 119.78948 * 359.73659 * 11 10 9 21 21 C 1.36320 * 119.89666 * 0.02562 * 20 11 10 22 22 O 1.42899 * 109.46887 * 240.00252 * 2 1 3 23 23 C 1.42898 * 114.00341 * 59.99952 * 22 2 1 24 24 C 1.52995 * 109.47038 * 179.97438 * 23 22 2 25 25 C 1.52999 * 117.50241 * 243.62402 * 24 23 22 26 26 C 1.52997 * 117.49954 * 174.99702 * 24 23 22 27 27 H 1.08998 * 109.47523 * 299.99925 * 1 2 3 28 28 H 1.08996 * 109.47051 * 60.00064 * 1 2 3 29 29 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46548 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47307 * 299.99779 * 3 2 1 32 32 H 1.08998 * 109.47063 * 59.99793 * 3 2 1 33 33 H 1.09003 * 109.47073 * 65.00761 * 4 2 1 34 34 H 1.08991 * 109.47813 * 305.00321 * 4 2 1 35 35 H 0.96997 * 120.00373 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.94852 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.05613 * 180.23113 * 10 9 8 38 38 H 0.96995 * 119.99936 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.05607 * 179.97438 * 20 11 10 40 40 H 1.07995 * 119.95153 * 179.97438 * 21 20 11 41 41 H 1.08998 * 109.46979 * 300.00009 * 23 22 2 42 42 H 1.09001 * 109.46759 * 59.99594 * 23 22 2 43 43 H 1.09000 * 115.55194 * 29.32936 * 24 23 22 44 44 H 1.09004 * 117.49614 * 359.97438 * 25 24 23 45 45 H 1.08992 * 117.50391 * 145.02460 * 25 24 23 46 46 H 1.09003 * 117.50147 * 214.98114 * 26 24 23 47 47 H 1.09004 * 117.49998 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.6178 1.3110 6 6 4.1731 -1.1833 2.3325 7 8 3.5684 -1.7789 3.2032 8 6 5.6445 -1.0786 2.3951 9 6 6.3389 -0.3963 1.3889 10 6 7.6969 -0.2928 1.4448 11 6 8.4028 -0.8831 2.5118 12 6 9.8091 -0.7838 2.5710 13 1 10.3802 -1.5230 3.1130 14 6 10.4651 0.2747 1.9263 15 7 9.7965 1.3412 1.5763 16 14 12.2947 0.1597 1.5677 17 1 12.8151 -1.1405 2.0613 18 1 12.5193 0.2595 0.1032 19 1 13.0042 1.2691 2.2539 20 6 7.7000 -1.5732 3.5191 21 6 6.3415 -1.6673 3.4572 22 8 2.0063 -0.6736 -1.1668 23 6 1.5847 -0.0773 -2.3951 24 6 2.1505 -0.8765 -3.5706 25 6 3.1368 -0.1650 -4.4991 26 6 1.7153 -0.4658 -4.9787 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.9824 -0.1423 0.6166 36 1 5.7973 0.0525 0.5692 37 1 8.2314 0.2370 0.6701 38 1 10.2502 2.0732 1.1300 39 1 8.2368 -2.0277 4.3387 40 1 5.8019 -2.1965 4.2286 41 1 0.4958 -0.0789 -2.4447 42 1 1.9491 0.9488 -2.4447 43 1 2.3116 -1.9381 -3.3832 44 1 3.3822 0.8726 -4.2726 45 1 3.9469 -0.7584 -4.9226 46 1 1.5905 -1.2572 -5.7178 47 1 1.0262 0.3740 -5.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412624024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:49 Heat of formation + Delta-G solvation = -52.614403 kcal Electronic energy + Delta-G solvation = -26164.839943 eV Core-core repulsion = 22505.638691 eV Total energy + Delta-G solvation = -3659.201252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.76803 -38.70915 -37.34697 -36.89469 -34.36113 -33.83454 -32.17433 -30.13483 -29.40273 -27.77949 -27.57873 -26.51847 -25.00491 -22.61112 -21.82709 -20.96720 -20.78081 -20.15979 -19.49882 -17.50441 -17.13763 -16.70631 -16.01956 -15.72724 -15.43584 -14.99519 -14.61340 -14.37718 -14.08085 -13.92676 -13.67211 -13.36134 -13.16496 -13.05327 -12.65987 -12.32227 -12.26073 -12.08686 -12.05083 -11.87736 -11.79895 -11.59808 -11.41182 -11.33123 -11.25049 -10.92148 -10.74204 -10.62566 -10.59526 -10.37049 -10.00904 -9.55802 -9.53190 -9.31976 -8.91334 -8.50544 -7.68091 -7.50264 -7.00956 -4.57052 2.27512 2.92397 2.96673 3.02321 3.07361 3.26843 3.66360 3.76165 3.86817 3.92526 4.48418 4.60173 4.63022 4.65612 4.75428 4.81969 4.83574 5.10031 5.21757 5.30984 5.36994 5.42041 5.46119 5.57491 5.59878 5.62936 5.67344 5.78142 5.86128 5.86749 5.91628 6.00340 6.06824 6.09600 6.23073 6.35913 6.80205 6.85742 6.98915 7.09225 7.16193 7.17588 7.47341 7.69667 7.83612 7.89733 8.10514 8.31792 8.43430 8.66470 8.78929 9.14529 9.91142 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003122 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.325458 B = 8966.638491 C =10619.599943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 C -0.180 4.180 4 C 0.141 3.859 5 N -0.735 5.735 6 C 0.571 3.429 7 O -0.579 6.579 8 C -0.282 4.282 9 C -0.061 4.061 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.443 4.443 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.773 5.773 16 Si 0.912 3.088 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.239 4.239 21 C -0.022 4.022 22 O -0.367 6.367 23 C 0.088 3.912 24 C -0.151 4.151 25 C -0.176 4.176 26 C -0.177 4.177 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 2.617 -11.010 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.062 3.938 3 C -0.238 4.238 4 C 0.016 3.984 5 N -0.389 5.389 6 C 0.366 3.634 7 O -0.461 6.461 8 C -0.286 4.286 9 C -0.081 4.081 10 C -0.197 4.197 11 C 0.125 3.875 12 C -0.471 4.471 13 H 0.103 0.897 14 C -0.146 4.146 15 N -0.396 5.396 16 Si 0.736 3.264 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.259 4.259 21 C -0.042 4.042 22 O -0.286 6.286 23 C 0.011 3.989 24 C -0.170 4.170 25 C -0.213 4.213 26 C -0.214 4.214 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.440 2.284 -10.494 17.204 hybrid contribution 0.840 0.632 -0.637 1.229 sum -12.601 2.916 -11.130 17.064 Atomic orbital electron populations 1.22356 0.94932 1.03236 1.02806 1.21748 0.93527 0.92290 0.86203 1.22439 1.02799 0.95864 1.02674 1.21142 0.82123 1.00689 0.94402 1.45848 1.06131 1.58937 1.27949 1.18584 0.88129 0.76764 0.79950 1.90626 1.70738 1.44881 1.39871 1.18906 0.90148 1.16376 1.03189 1.20472 0.94901 0.96844 0.95854 1.20968 0.92656 1.05969 1.00138 1.17784 0.93207 0.87553 0.88921 1.19865 0.92114 1.08054 1.27086 0.89722 1.26091 1.01560 0.94108 0.92890 1.69756 1.38936 1.03744 1.27151 0.86183 0.81266 0.79815 0.79149 1.18073 1.19406 1.19714 1.20719 0.93260 1.10931 1.00968 1.20362 0.93851 0.94807 0.95151 1.88044 1.74404 1.53574 1.12582 1.22032 0.97835 0.95635 0.83380 1.22133 1.04137 1.00841 0.89848 1.23070 0.93022 1.01650 1.03537 1.22963 0.98367 1.03535 0.96504 0.91072 0.91887 0.91330 0.91213 0.92105 0.91029 0.91287 0.90652 0.76369 0.89423 0.86236 0.90359 0.88412 0.88116 0.92834 0.92925 0.86863 0.88646 0.88514 0.88521 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.25 37.16 0.31 -1.26 16 2 C 0.10 1.17 0.80 -90.62 -0.07 1.10 16 3 C -0.18 -1.90 8.02 37.16 0.30 -1.60 16 4 C 0.14 2.07 4.84 -4.04 -0.02 2.05 16 5 N -0.73 -12.94 5.14 -61.31 -0.32 -13.26 16 6 C 0.57 12.56 7.76 -12.42 -0.10 12.47 16 7 O -0.58 -14.13 16.32 5.28 0.09 -14.04 16 8 C -0.28 -6.62 5.89 -104.73 -0.62 -7.23 16 9 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 10 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 11 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 12 C -0.44 -11.15 9.04 -37.75 -0.34 -11.49 16 13 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 14 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 15 N -0.77 -18.62 10.95 55.56 0.61 -18.01 16 16 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 C -0.24 -5.90 9.73 -39.27 -0.38 -6.28 16 21 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 22 O -0.37 -4.66 9.93 -35.23 -0.35 -5.01 16 23 C 0.09 0.88 5.42 37.16 0.20 1.08 16 24 C -0.15 -1.49 6.06 -90.62 -0.55 -2.04 16 25 C -0.18 -1.58 10.18 -26.73 -0.27 -1.86 16 26 C -0.18 -1.37 10.25 -26.73 -0.27 -1.65 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.83 6.57 -51.93 -0.34 0.49 16 31 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 6.61 4.99 -40.82 -0.20 6.41 16 36 H 0.09 1.73 6.37 -52.48 -0.33 1.40 16 37 H 0.12 3.01 6.16 -52.49 -0.32 2.68 16 38 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 39 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 41 H 0.05 0.47 6.42 -51.93 -0.33 0.13 16 42 H 0.05 0.49 6.15 -51.93 -0.32 0.17 16 43 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -28.99 380.80 -9.99 -38.97 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.13 Total: 13.04 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.59 Total: -19.80 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.29 Total: -31.27 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.26 Total: -19.05 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.99 -9.99 -38.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412624024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.643 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds