Wall clock time and date at job start Tue Mar 31 2020 12:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46717 * 2 1 4 4 C 1.52995 * 109.46902 * 119.99609 * 2 1 3 5 5 N 1.46502 * 109.46895 * 185.00025 * 4 2 1 6 6 C 1.34776 * 120.00188 * 180.02562 * 5 4 2 7 7 O 1.21593 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.47642 * 120.00404 * 180.02562 * 6 5 4 9 9 C 1.40009 * 119.89172 * 359.72630 * 8 6 5 10 10 C 1.36315 * 120.10651 * 179.75799 * 9 8 6 11 11 C 1.40893 * 119.89166 * 0.51486 * 10 9 8 12 12 C 1.41105 * 120.10362 * 179.71818 * 11 10 9 13 13 H 1.08000 * 119.99496 * 204.64152 * 12 11 10 14 14 C 1.40224 * 120.00495 * 24.64924 * 12 11 10 15 15 N 1.30650 * 119.99806 * 17.87108 * 14 12 11 16 16 Si 1.86795 * 120.00075 * 197.87704 * 14 12 11 17 17 H 1.48495 * 109.47266 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47280 * 119.99828 * 16 14 12 19 19 H 1.48496 * 109.46873 * 239.99385 * 16 14 12 20 20 C 1.40884 * 119.78948 * 359.73659 * 11 10 9 21 21 C 1.36320 * 119.89666 * 0.02562 * 20 11 10 22 22 O 1.42899 * 109.46887 * 240.00252 * 2 1 3 23 23 C 1.42898 * 114.00341 * 59.99952 * 22 2 1 24 24 C 1.52995 * 109.47038 * 179.97438 * 23 22 2 25 25 C 1.52999 * 117.50241 * 243.62402 * 24 23 22 26 26 C 1.52997 * 117.49954 * 174.99702 * 24 23 22 27 27 H 1.08998 * 109.47523 * 299.99925 * 1 2 3 28 28 H 1.08996 * 109.47051 * 60.00064 * 1 2 3 29 29 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46548 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47307 * 299.99779 * 3 2 1 32 32 H 1.08998 * 109.47063 * 59.99793 * 3 2 1 33 33 H 1.09003 * 109.47073 * 65.00761 * 4 2 1 34 34 H 1.08991 * 109.47813 * 305.00321 * 4 2 1 35 35 H 0.96997 * 120.00373 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.94852 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.05613 * 180.23113 * 10 9 8 38 38 H 0.96995 * 119.99936 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.05607 * 179.97438 * 20 11 10 40 40 H 1.07995 * 119.95153 * 179.97438 * 21 20 11 41 41 H 1.08998 * 109.46979 * 300.00009 * 23 22 2 42 42 H 1.09001 * 109.46759 * 59.99594 * 23 22 2 43 43 H 1.09000 * 115.55194 * 29.32936 * 24 23 22 44 44 H 1.09004 * 117.49614 * 359.97438 * 25 24 23 45 45 H 1.08992 * 117.50391 * 145.02460 * 25 24 23 46 46 H 1.09003 * 117.50147 * 214.98114 * 26 24 23 47 47 H 1.09004 * 117.49998 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.6178 1.3110 6 6 4.1731 -1.1833 2.3325 7 8 3.5684 -1.7789 3.2032 8 6 5.6445 -1.0786 2.3951 9 6 6.3389 -0.3963 1.3889 10 6 7.6969 -0.2928 1.4448 11 6 8.4028 -0.8831 2.5118 12 6 9.8091 -0.7838 2.5710 13 1 10.3802 -1.5230 3.1130 14 6 10.4651 0.2747 1.9263 15 7 9.7965 1.3412 1.5763 16 14 12.2947 0.1597 1.5677 17 1 12.8151 -1.1405 2.0613 18 1 12.5193 0.2595 0.1032 19 1 13.0042 1.2691 2.2539 20 6 7.7000 -1.5732 3.5191 21 6 6.3415 -1.6673 3.4572 22 8 2.0063 -0.6736 -1.1668 23 6 1.5847 -0.0773 -2.3951 24 6 2.1505 -0.8765 -3.5706 25 6 3.1368 -0.1650 -4.4991 26 6 1.7153 -0.4658 -4.9787 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.9824 -0.1423 0.6166 36 1 5.7973 0.0525 0.5692 37 1 8.2314 0.2370 0.6701 38 1 10.2502 2.0732 1.1300 39 1 8.2368 -2.0277 4.3387 40 1 5.8019 -2.1965 4.2286 41 1 0.4958 -0.0789 -2.4447 42 1 1.9491 0.9488 -2.4447 43 1 2.3116 -1.9381 -3.3832 44 1 3.3822 0.8726 -4.2726 45 1 3.9469 -0.7584 -4.9226 46 1 1.5905 -1.2572 -5.7178 47 1 1.0262 0.3740 -5.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412624024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:48 Heat of formation + Delta-G solvation = -67.573525 kcal Electronic energy + Delta-G solvation = -26165.488619 eV Core-core repulsion = 22505.638691 eV Total energy + Delta-G solvation = -3659.849928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03642 -40.07220 -38.87035 -37.95946 -35.68067 -35.66347 -33.35851 -31.89706 -31.29724 -28.74619 -28.38893 -27.93562 -26.45370 -23.57720 -23.24907 -22.78418 -21.61132 -21.27074 -21.02145 -19.37108 -18.63386 -17.67202 -17.29313 -17.02067 -16.76307 -16.13973 -15.88689 -15.75514 -15.53980 -15.25976 -15.01459 -14.59593 -14.50972 -14.14318 -14.11574 -13.82257 -13.70194 -13.49695 -13.19620 -12.93557 -12.88562 -12.84988 -12.62493 -12.47257 -12.37283 -12.36762 -12.23576 -11.76166 -11.57385 -11.38046 -11.32242 -11.14261 -11.11848 -10.71863 -10.33319 -10.05543 -9.57778 -9.40257 -8.79371 -6.48072 0.44219 1.14712 1.38793 1.42448 1.55734 2.12379 2.18331 2.38206 2.49984 2.79043 2.96031 3.58975 3.69141 3.83369 3.92055 3.95990 3.98939 4.12737 4.26103 4.30444 4.36644 4.44735 4.48438 4.56619 4.61244 4.67489 4.74442 4.76927 4.78467 4.85758 4.91924 4.98109 5.02046 5.03211 5.12866 5.15872 5.24103 5.27558 5.29625 5.31458 5.55368 5.59879 5.82073 5.94451 5.99568 6.22290 6.31907 6.53871 6.70175 6.77136 6.88858 7.43990 8.16164 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003122 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.325458 B = 8966.638491 C =10619.599943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 C -0.179 4.179 4 C 0.135 3.865 5 N -0.718 5.718 6 C 0.569 3.431 7 O -0.607 6.607 8 C -0.294 4.294 9 C -0.053 4.053 10 C -0.197 4.197 11 C 0.102 3.898 12 C -0.473 4.473 13 H 0.085 0.915 14 C 0.038 3.962 15 N -0.797 5.797 16 Si 0.988 3.012 17 H -0.257 1.257 18 H -0.260 1.260 19 H -0.263 1.263 20 C -0.253 4.253 21 C -0.032 4.032 22 O -0.393 6.393 23 C 0.087 3.913 24 C -0.170 4.170 25 C -0.185 4.185 26 C -0.157 4.157 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 3.930 -12.697 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.067 3.933 3 C -0.237 4.237 4 C 0.012 3.988 5 N -0.370 5.370 6 C 0.363 3.637 7 O -0.492 6.492 8 C -0.298 4.298 9 C -0.072 4.072 10 C -0.216 4.216 11 C 0.099 3.901 12 C -0.500 4.500 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.421 5.421 16 Si 0.808 3.192 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.188 1.188 20 C -0.273 4.273 21 C -0.052 4.052 22 O -0.313 6.313 23 C 0.011 3.989 24 C -0.189 4.189 25 C -0.222 4.222 26 C -0.194 4.194 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.244 0.756 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.123 0.877 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.063 3.615 -12.209 18.971 hybrid contribution 0.955 0.232 -0.135 0.992 sum -13.108 3.847 -12.344 18.412 Atomic orbital electron populations 1.22329 0.92643 1.03542 1.04349 1.21697 0.95064 0.92011 0.84497 1.22439 1.01729 0.95383 1.04122 1.21374 0.79995 1.00637 0.96805 1.45733 1.07583 1.57239 1.26488 1.18421 0.87661 0.76988 0.80635 1.90604 1.71061 1.46356 1.41211 1.19181 0.91374 1.16150 1.03091 1.20671 0.94365 0.95919 0.96245 1.20993 0.93490 1.06966 1.00153 1.18129 0.94093 0.88309 0.89576 1.20134 0.92240 1.09065 1.28542 0.89662 1.26936 1.06191 0.93085 0.91922 1.69769 1.41098 1.04351 1.26868 0.85060 0.75081 0.79819 0.79264 1.18078 1.18436 1.18768 1.20868 0.93624 1.11467 1.01321 1.20509 0.93874 0.95088 0.95690 1.88006 1.75125 1.54515 1.13672 1.22169 0.98794 0.95756 0.82166 1.22143 1.05648 1.00051 0.91035 1.23134 0.93737 1.01666 1.03696 1.23055 0.97462 1.03929 0.94915 0.89885 0.89993 0.91690 0.92856 0.90012 0.90287 0.92581 0.90086 0.75637 0.86564 0.86842 0.89178 0.87675 0.87868 0.91237 0.92124 0.88586 0.88308 0.88883 0.87665 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 8.25 71.98 0.59 -2.03 16 2 C 0.11 2.26 0.80 -10.79 -0.01 2.25 16 3 C -0.18 -3.37 8.02 71.98 0.58 -2.79 16 4 C 0.14 3.88 4.84 86.38 0.42 4.30 16 5 N -0.72 -24.99 5.14 -466.16 -2.40 -27.38 16 6 C 0.57 25.19 7.76 86.73 0.67 25.86 16 7 O -0.61 -29.99 16.32 -4.01 -0.07 -30.06 16 8 C -0.29 -13.96 5.89 -19.93 -0.12 -14.08 16 9 C -0.05 -2.43 9.47 22.25 0.21 -2.21 16 10 C -0.20 -9.96 8.64 22.47 0.19 -9.77 16 11 C 0.10 5.41 5.58 -21.28 -0.12 5.29 16 12 C -0.47 -24.16 9.04 23.46 0.21 -23.95 16 13 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 14 C 0.04 1.76 5.14 85.35 0.44 2.20 16 15 N -0.80 -38.32 10.95 21.87 0.24 -38.08 16 16 Si 0.99 35.01 29.60 68.60 2.03 37.04 16 17 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 20 C -0.25 -12.86 9.73 22.47 0.22 -12.65 16 21 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 22 O -0.39 -9.49 9.93 -148.98 -1.48 -10.97 16 23 C 0.09 1.56 5.42 71.98 0.39 1.95 16 24 C -0.17 -3.14 6.06 -10.80 -0.07 -3.21 16 25 C -0.19 -3.10 10.18 30.60 0.31 -2.79 16 26 C -0.16 -2.09 10.25 30.59 0.31 -1.78 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 0.97 6.54 -2.39 -0.02 0.95 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.17 6.57 -2.39 -0.02 1.16 16 31 H 0.08 1.19 6.54 -2.39 -0.02 1.18 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.41 13.10 4.99 -92.71 -0.46 12.64 16 36 H 0.12 4.51 6.37 -2.91 -0.02 4.49 16 37 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 38 H 0.30 12.60 8.29 -92.71 -0.77 11.83 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 40 H 0.10 4.96 7.63 -2.91 -0.02 4.94 16 41 H 0.07 1.00 6.42 -2.39 -0.02 0.99 16 42 H 0.06 0.98 6.15 -2.39 -0.01 0.96 16 43 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.10 1.56 8.03 -2.39 -0.02 1.54 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -63.21 380.80 3.30 -59.91 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: 0.51 Total: 44.34 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 4.45 Total: -34.80 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -2.16 Total: -65.47 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.55 Total: -41.03 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Total: -63.21 3.30 -59.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412624024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.663 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds