Wall clock time and date at job start Tue Mar 31 2020 11:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 C 1.52999 * 109.46629 * 240.00124 * 2 1 3 5 5 C 1.50700 * 109.47437 * 60.00231 * 4 2 1 6 6 H 1.07994 * 119.99659 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47034 * 90.00155 * 9 7 5 11 11 H 1.48500 * 109.46986 * 210.00616 * 9 7 5 12 12 H 1.48507 * 109.46849 * 330.00453 * 9 7 5 13 13 C 1.53001 * 109.47001 * 120.00299 * 2 1 3 14 14 N 1.46894 * 109.47341 * 299.39285 * 13 2 1 15 15 C 1.46893 * 111.00657 * 185.62622 * 14 13 2 16 16 C 1.52994 * 109.47942 * 174.42484 * 15 14 13 17 17 C 1.53009 * 112.84542 * 58.53802 * 16 15 14 18 18 S 1.81407 * 109.46740 * 65.46914 * 17 16 15 19 19 C 1.81400 * 101.91693 * 174.74830 * 18 17 16 20 20 O 1.42098 * 108.57457 * 289.23643 * 18 17 16 21 21 O 1.42096 * 108.57759 * 60.25987 * 18 17 16 22 22 C 1.53774 * 113.61962 * 189.73911 * 16 15 14 23 23 C 1.53944 * 87.02230 * 89.22928 * 22 16 15 24 24 C 1.53780 * 113.61770 * 287.35071 * 16 15 14 25 25 H 1.09006 * 109.46909 * 300.00200 * 1 2 3 26 26 H 1.09002 * 109.46798 * 59.99465 * 1 2 3 27 27 H 1.09000 * 109.47599 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46977 * 185.69869 * 3 2 1 29 29 H 1.08993 * 109.47359 * 305.69871 * 3 2 1 30 30 H 1.08997 * 109.46959 * 65.70180 * 3 2 1 31 31 H 1.09000 * 109.46873 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47522 * 300.00248 * 4 2 1 33 33 H 0.97000 * 119.99875 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.46986 * 179.38928 * 13 2 1 35 35 H 1.09009 * 109.46986 * 59.38989 * 13 2 1 36 36 H 1.00902 * 111.00251 * 61.66820 * 14 13 2 37 37 H 1.09009 * 109.46823 * 54.42521 * 15 14 13 38 38 H 1.09004 * 109.47250 * 294.43208 * 15 14 13 39 39 H 1.08992 * 109.47220 * 305.46639 * 17 16 15 40 40 H 1.09000 * 109.46773 * 185.46401 * 17 16 15 41 41 H 1.08997 * 109.47152 * 60.00152 * 19 18 17 42 42 H 1.09003 * 109.46982 * 179.97438 * 19 18 17 43 43 H 1.09000 * 109.47318 * 299.99983 * 19 18 17 44 44 H 1.09007 * 113.61637 * 203.75100 * 22 16 15 45 45 H 1.09006 * 113.61267 * 334.64697 * 22 16 15 46 46 H 1.08997 * 113.54128 * 270.81471 * 23 22 16 47 47 H 1.09006 * 113.74658 * 139.94427 * 23 22 16 48 48 H 1.08999 * 113.61167 * 25.33739 * 24 16 15 49 49 H 1.08996 * 113.61891 * 156.15860 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7321 8 7 2.6270 -1.5509 -3.8527 9 14 1.2490 0.3995 -5.2572 10 1 2.2274 1.4411 -5.6608 11 1 1.0841 -0.5794 -6.3617 12 1 -0.0592 1.0372 -4.9615 13 6 2.0400 -0.7213 1.2492 14 7 1.5624 -0.0205 2.4486 15 6 2.1410 -0.6053 3.6656 16 6 1.7329 0.2334 4.8784 17 6 0.2156 0.3322 5.0489 18 16 -0.4584 -1.3089 5.4276 19 6 -2.2048 -0.9329 5.7430 20 8 -0.3723 -2.1140 4.2599 21 8 0.1302 -1.7724 6.6349 22 6 2.4744 -0.1497 6.1700 23 6 3.5500 0.8727 5.7605 24 6 2.4515 1.5906 4.9588 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1253 1.4440 -0.1020 29 1 1.5959 1.9849 -0.8345 30 1 1.7625 1.9259 0.9366 31 1 3.1299 -0.7217 -1.2491 32 1 1.6765 -1.7489 -1.2494 33 1 2.8619 -1.8819 -4.7337 34 1 3.1299 -0.7308 1.2438 35 1 1.6677 -1.7459 1.2546 36 1 0.5543 -0.0219 2.4909 37 1 3.2278 -0.6177 3.5815 38 1 1.7745 -1.6245 3.7887 39 1 -0.2302 0.7042 4.1265 40 1 -0.0144 1.0167 5.8655 41 1 -2.6463 -0.4841 4.8532 42 1 -2.7361 -1.8528 5.9872 43 1 -2.2814 -0.2360 6.5776 44 1 1.9372 0.1219 7.0788 45 1 2.8308 -1.1798 6.1797 46 1 4.3386 0.4494 5.1385 47 1 3.9371 1.4599 6.5933 48 1 2.7896 1.9635 3.9920 49 1 1.9074 2.3393 5.5345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414550331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:15 Heat of formation + Delta-G solvation = -65.056216 kcal Electronic energy + Delta-G solvation = -26267.962477 eV Core-core repulsion = 22743.665659 eV Total energy + Delta-G solvation = -3524.296818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94893 -37.38402 -37.10908 -36.18800 -33.94253 -32.11280 -30.72429 -29.78115 -27.21373 -26.34683 -26.26128 -25.82950 -24.38292 -22.70585 -21.89728 -19.12086 -18.68234 -17.67445 -16.93208 -16.49563 -16.36257 -16.15072 -15.46762 -15.40947 -14.88644 -14.58097 -14.17782 -13.77225 -13.61272 -13.55396 -13.26234 -13.18699 -12.56633 -12.48403 -12.40357 -12.26327 -12.15194 -12.12099 -11.95453 -11.66023 -11.59456 -11.27703 -11.13146 -10.93870 -10.80710 -10.73256 -10.64332 -10.43794 -10.42103 -10.19909 -10.05851 -10.00974 -9.60765 -8.94620 -8.78326 -8.27208 -8.02357 -5.91699 -3.91596 -0.27543 2.49634 3.35860 3.37559 3.42297 3.44855 3.72836 4.11566 4.21070 4.29022 4.44206 4.52049 4.53890 4.66271 4.76612 4.89526 4.92127 5.25060 5.28230 5.44055 5.45175 5.56712 5.60861 5.67527 5.75567 5.83248 5.88356 5.90736 6.05443 6.08513 6.13702 6.30956 6.38037 6.39725 6.58449 6.71777 6.86157 6.88523 7.26929 7.27435 7.30288 7.44865 7.69478 7.76804 7.92729 8.09155 8.53777 9.13994 9.70861 11.20053 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.003178 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.369192 B = 8808.477670 C = 9495.488976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 C -0.115 4.115 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.068 3.932 14 N -0.678 5.678 15 C 0.059 3.941 16 C -0.064 4.064 17 C -0.594 4.594 18 S 2.409 3.591 19 C -0.663 4.663 20 O -0.931 6.931 21 O -0.937 6.937 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.111 4.111 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.334 0.666 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 5.178 23.672 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 C -0.172 4.172 4 C -0.005 4.005 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.060 4.060 14 N -0.309 5.309 15 C -0.071 4.071 16 C -0.066 4.066 17 C -0.724 4.724 18 S 2.592 3.408 19 C -0.811 4.811 20 O -0.928 6.928 21 O -0.934 6.934 22 C -0.178 4.178 23 C -0.180 4.180 24 C -0.149 4.149 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.076 4.716 23.519 24.518 hybrid contribution -1.395 0.315 -0.945 1.714 sum -6.470 5.031 22.574 24.015 Atomic orbital electron populations 1.21768 0.96180 1.00528 1.00125 1.20602 0.94708 0.96015 0.94368 1.21585 0.99873 0.95910 0.99850 1.19137 0.96050 0.95076 0.90191 1.21240 1.30695 1.11800 0.90631 0.92354 1.25016 0.95478 0.95110 0.99014 1.69969 1.37376 1.23198 1.23215 0.86673 0.79189 0.79408 0.83182 1.20838 1.21427 1.19985 1.22111 0.99697 0.95063 0.89150 1.60559 1.12768 1.56473 1.01110 1.21985 1.01152 0.95150 0.88826 1.21596 0.88716 1.00050 0.96244 1.30295 1.07147 1.22829 1.12082 1.08211 0.78055 0.78629 0.75926 1.30338 1.26413 1.12456 1.11914 1.93647 1.85323 1.64732 1.49085 1.93588 1.74711 1.78487 1.46623 1.23228 0.97785 1.00510 0.96286 1.22861 0.96840 0.98149 1.00107 1.22829 0.96228 0.94480 1.01394 0.95021 0.91871 0.93899 0.94203 0.93131 0.93657 0.96738 0.96852 0.93208 0.91601 0.95275 0.84738 0.89804 0.93801 0.84408 0.85007 0.85217 0.85390 0.85562 0.89084 0.90581 0.89894 0.91397 0.89673 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.90 37.16 0.29 -2.14 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.11 -2.21 8.03 37.15 0.30 -1.91 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.97 7.71 -34.44 -0.27 -14.23 16 6 H 0.06 1.56 5.69 -52.49 -0.30 1.27 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.07 1.22 4.64 -3.83 -0.02 1.20 16 14 N -0.68 -9.69 5.40 -113.78 -0.61 -10.30 16 15 C 0.06 0.74 4.61 -3.83 -0.02 0.72 16 16 C -0.06 -0.63 0.65 -153.70 -0.10 -0.73 16 17 C -0.59 -4.33 4.96 37.16 0.18 -4.15 16 18 S 2.41 21.01 5.04 -107.50 -0.54 20.47 16 19 C -0.66 -3.38 10.62 101.05 1.07 -2.31 16 20 O -0.93 -12.15 16.21 -57.83 -0.94 -13.09 16 21 O -0.94 -10.69 16.64 -57.83 -0.96 -11.66 16 22 C -0.14 -1.30 5.76 -25.84 -0.15 -1.45 16 23 C -0.14 -1.24 7.74 -25.83 -0.20 -1.44 16 24 C -0.11 -1.01 7.21 -25.92 -0.19 -1.20 16 25 H 0.03 0.49 6.72 -51.93 -0.35 0.14 16 26 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.03 6.82 -51.93 -0.35 0.68 16 30 H 0.04 0.76 7.41 -51.93 -0.38 0.38 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.33 4.52 5.47 -39.29 -0.22 4.30 16 37 H 0.08 1.05 7.24 -51.92 -0.38 0.68 16 38 H 0.04 0.61 6.20 -51.93 -0.32 0.28 16 39 H 0.14 0.91 6.75 -51.93 -0.35 0.56 16 40 H 0.13 0.54 8.07 -51.92 -0.42 0.12 16 41 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.09 0.75 8.02 -51.93 -0.42 0.33 16 45 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 46 H 0.08 0.75 7.60 -51.93 -0.39 0.36 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 49 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -34.66 383.88 -9.79 -44.44 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.84 Total: 0.72 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 0.61 Total: -26.68 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.12 Total: -36.74 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.90 Total: -24.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 21.01 SS G_CDS: -0.54 Total: 20.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.66 -9.79 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414550331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.613 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds