Wall clock time and date at job start Tue Mar 31 2020 11:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 C 1.52999 * 109.46629 * 240.00124 * 2 1 3 5 5 C 1.50700 * 109.47437 * 60.00231 * 4 2 1 6 6 H 1.07994 * 119.99659 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47034 * 90.00155 * 9 7 5 11 11 H 1.48500 * 109.46986 * 210.00616 * 9 7 5 12 12 H 1.48507 * 109.46849 * 330.00453 * 9 7 5 13 13 C 1.53001 * 109.47001 * 120.00299 * 2 1 3 14 14 N 1.46894 * 109.47341 * 299.39285 * 13 2 1 15 15 C 1.46893 * 111.00657 * 185.62622 * 14 13 2 16 16 C 1.52994 * 109.47942 * 174.42484 * 15 14 13 17 17 C 1.53009 * 112.84542 * 58.53802 * 16 15 14 18 18 S 1.81407 * 109.46740 * 65.46914 * 17 16 15 19 19 C 1.81400 * 101.91693 * 174.74830 * 18 17 16 20 20 O 1.42098 * 108.57457 * 289.23643 * 18 17 16 21 21 O 1.42096 * 108.57759 * 60.25987 * 18 17 16 22 22 C 1.53774 * 113.61962 * 189.73911 * 16 15 14 23 23 C 1.53944 * 87.02230 * 89.22928 * 22 16 15 24 24 C 1.53780 * 113.61770 * 287.35071 * 16 15 14 25 25 H 1.09006 * 109.46909 * 300.00200 * 1 2 3 26 26 H 1.09002 * 109.46798 * 59.99465 * 1 2 3 27 27 H 1.09000 * 109.47599 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46977 * 185.69869 * 3 2 1 29 29 H 1.08993 * 109.47359 * 305.69871 * 3 2 1 30 30 H 1.08997 * 109.46959 * 65.70180 * 3 2 1 31 31 H 1.09000 * 109.46873 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47522 * 300.00248 * 4 2 1 33 33 H 0.97000 * 119.99875 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.46986 * 179.38928 * 13 2 1 35 35 H 1.09009 * 109.46986 * 59.38989 * 13 2 1 36 36 H 1.00902 * 111.00251 * 61.66820 * 14 13 2 37 37 H 1.09009 * 109.46823 * 54.42521 * 15 14 13 38 38 H 1.09004 * 109.47250 * 294.43208 * 15 14 13 39 39 H 1.08992 * 109.47220 * 305.46639 * 17 16 15 40 40 H 1.09000 * 109.46773 * 185.46401 * 17 16 15 41 41 H 1.08997 * 109.47152 * 60.00152 * 19 18 17 42 42 H 1.09003 * 109.46982 * 179.97438 * 19 18 17 43 43 H 1.09000 * 109.47318 * 299.99983 * 19 18 17 44 44 H 1.09007 * 113.61637 * 203.75100 * 22 16 15 45 45 H 1.09006 * 113.61267 * 334.64697 * 22 16 15 46 46 H 1.08997 * 113.54128 * 270.81471 * 23 22 16 47 47 H 1.09006 * 113.74658 * 139.94427 * 23 22 16 48 48 H 1.08999 * 113.61167 * 25.33739 * 24 16 15 49 49 H 1.08996 * 113.61891 * 156.15860 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7321 8 7 2.6270 -1.5509 -3.8527 9 14 1.2490 0.3995 -5.2572 10 1 2.2274 1.4411 -5.6608 11 1 1.0841 -0.5794 -6.3617 12 1 -0.0592 1.0372 -4.9615 13 6 2.0400 -0.7213 1.2492 14 7 1.5624 -0.0205 2.4486 15 6 2.1410 -0.6053 3.6656 16 6 1.7329 0.2334 4.8784 17 6 0.2156 0.3322 5.0489 18 16 -0.4584 -1.3089 5.4276 19 6 -2.2048 -0.9329 5.7430 20 8 -0.3723 -2.1140 4.2599 21 8 0.1302 -1.7724 6.6349 22 6 2.4744 -0.1497 6.1700 23 6 3.5500 0.8727 5.7605 24 6 2.4515 1.5906 4.9588 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1253 1.4440 -0.1020 29 1 1.5959 1.9849 -0.8345 30 1 1.7625 1.9259 0.9366 31 1 3.1299 -0.7217 -1.2491 32 1 1.6765 -1.7489 -1.2494 33 1 2.8619 -1.8819 -4.7337 34 1 3.1299 -0.7308 1.2438 35 1 1.6677 -1.7459 1.2546 36 1 0.5543 -0.0219 2.4909 37 1 3.2278 -0.6177 3.5815 38 1 1.7745 -1.6245 3.7887 39 1 -0.2302 0.7042 4.1265 40 1 -0.0144 1.0167 5.8655 41 1 -2.6463 -0.4841 4.8532 42 1 -2.7361 -1.8528 5.9872 43 1 -2.2814 -0.2360 6.5776 44 1 1.9372 0.1219 7.0788 45 1 2.8308 -1.1798 6.1797 46 1 4.3386 0.4494 5.1385 47 1 3.9371 1.4599 6.5933 48 1 2.7896 1.9635 3.9920 49 1 1.9074 2.3393 5.5345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414550331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:15 Heat of formation + Delta-G solvation = -89.357746 kcal Electronic energy + Delta-G solvation = -26269.016270 eV Core-core repulsion = 22743.665659 eV Total energy + Delta-G solvation = -3525.350611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76098 -38.89144 -37.92828 -36.94009 -35.46100 -34.03253 -31.42366 -30.29309 -29.08718 -27.85062 -27.66524 -26.56872 -25.88714 -24.09201 -23.11272 -19.90062 -19.68909 -19.01418 -18.31862 -17.65919 -17.23425 -17.04878 -16.59231 -16.54292 -16.16227 -15.79324 -15.40693 -15.13144 -14.79345 -14.44106 -14.00696 -13.95248 -13.88543 -13.85353 -13.55620 -13.45710 -13.14632 -13.06838 -12.92563 -12.90611 -12.72167 -12.66499 -12.56335 -12.32738 -12.20696 -12.14712 -11.91943 -11.89513 -11.77916 -11.39518 -11.35339 -11.12792 -10.84216 -10.70974 -10.66553 -10.49602 -9.30340 -8.12586 -6.20109 -0.87821 1.41499 1.42619 1.53107 1.93465 2.44769 2.77572 3.11473 3.14988 3.21257 3.49885 3.63058 3.82814 3.99164 4.04990 4.09550 4.14885 4.20015 4.26619 4.37798 4.41170 4.52207 4.65166 4.70563 4.82236 4.84901 4.90077 4.95526 4.96821 4.98771 5.06944 5.11750 5.14700 5.24140 5.25286 5.34121 5.39239 5.54060 5.55801 5.60612 5.61757 5.68503 5.90302 5.94049 6.03142 6.37609 6.51194 6.95357 7.47349 9.00112 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.003178 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.369192 B = 8808.477670 C = 9495.488976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.053 4.053 3 C -0.104 4.104 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.069 0.931 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.260 1.260 13 C 0.079 3.921 14 N -0.663 5.663 15 C 0.055 3.945 16 C -0.070 4.070 17 C -0.587 4.587 18 S 2.397 3.603 19 C -0.644 4.644 20 O -0.988 6.988 21 O -0.975 6.975 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.039 0.961 30 H 0.076 0.924 31 H -0.018 1.018 32 H -0.022 1.022 33 H 0.259 0.741 34 H 0.056 0.944 35 H 0.009 0.991 36 H 0.341 0.659 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.150 0.850 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 8.379 25.346 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.053 4.053 3 C -0.161 4.161 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.087 0.913 7 C -0.203 4.203 8 N -0.582 5.582 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.184 1.184 13 C -0.051 4.051 14 N -0.295 5.295 15 C -0.074 4.074 16 C -0.071 4.071 17 C -0.718 4.718 18 S 2.585 3.415 19 C -0.796 4.796 20 O -0.985 6.985 21 O -0.972 6.972 22 C -0.179 4.179 23 C -0.180 4.180 24 C -0.142 4.142 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.001 0.999 32 H -0.003 1.003 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.161 0.839 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.168 0.832 42 H 0.150 0.850 43 H 0.177 0.823 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.333 7.904 25.209 27.418 hybrid contribution -0.686 -0.707 -1.394 1.707 sum -8.019 7.197 23.815 26.140 Atomic orbital electron populations 1.21701 0.94686 1.00245 1.01415 1.20469 0.95877 0.96314 0.92690 1.21482 0.98881 0.94814 1.00960 1.19033 0.93956 0.93877 0.93049 1.21621 1.30236 1.11884 0.91309 0.91323 1.25967 0.95728 0.95888 1.02725 1.70127 1.38994 1.25055 1.24001 0.85536 0.79183 0.78154 0.78723 1.20047 1.21391 1.18429 1.21823 0.99073 0.94095 0.90069 1.60507 1.13273 1.55365 1.00314 1.22026 1.00703 0.95208 0.89478 1.21514 0.90817 1.00064 0.94731 1.30247 1.04920 1.22100 1.14492 1.08144 0.79882 0.79083 0.74350 1.30151 1.21506 1.13716 1.14229 1.93584 1.86868 1.67240 1.50845 1.93539 1.76625 1.79792 1.47231 1.23266 0.98176 0.99736 0.96703 1.22866 0.96575 0.98067 1.00470 1.22841 0.96145 0.94268 1.00964 0.90992 0.93181 0.95025 0.95459 0.94203 0.90562 0.99934 1.00319 0.93222 0.92510 0.97269 0.83887 0.90511 0.95404 0.83084 0.80707 0.83200 0.85044 0.82350 0.87387 0.92409 0.91119 0.89773 0.91282 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 7.90 71.98 0.57 -3.99 16 2 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 3 C -0.10 -3.91 8.03 71.98 0.58 -3.33 16 4 C 0.04 2.06 4.04 29.85 0.12 2.19 16 5 C -0.51 -28.84 7.71 25.60 0.20 -28.64 16 6 H 0.07 3.66 5.69 -2.91 -0.02 3.64 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.82 13.29 21.45 0.28 -58.53 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 13 C 0.08 2.90 4.64 86.30 0.40 3.30 16 14 N -0.66 -18.41 5.40 -513.90 -2.77 -21.18 16 15 C 0.06 1.41 4.61 86.30 0.40 1.81 16 16 C -0.07 -1.23 0.65 -51.66 -0.03 -1.26 16 17 C -0.59 -6.53 4.96 71.99 0.36 -6.17 16 18 S 2.40 38.41 5.04 -56.49 -0.28 38.13 16 19 C -0.64 -4.13 10.62 113.37 1.20 -2.92 16 20 O -0.99 -26.28 16.21 -127.37 -2.06 -28.34 16 21 O -0.97 -21.68 16.64 -127.37 -2.12 -23.80 16 22 C -0.14 -2.42 5.76 31.17 0.18 -2.25 16 23 C -0.14 -2.24 7.74 31.18 0.24 -2.00 16 24 C -0.10 -1.58 7.21 31.12 0.22 -1.36 16 25 H 0.07 2.06 6.72 -2.38 -0.02 2.04 16 26 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 1.56 6.82 -2.39 -0.02 1.55 16 30 H 0.08 2.38 7.41 -2.39 -0.02 2.36 16 31 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.34 8.59 5.47 -89.69 -0.49 8.10 16 37 H 0.08 2.01 7.24 -2.38 -0.02 2.00 16 38 H 0.03 0.81 6.20 -2.38 -0.01 0.80 16 39 H 0.15 1.34 6.75 -2.39 -0.02 1.32 16 40 H 0.18 0.44 8.07 -2.39 -0.02 0.42 16 41 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.16 0.05 8.14 -2.39 -0.02 0.04 16 44 H 0.11 1.50 8.02 -2.38 -0.02 1.48 16 45 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 46 H 0.07 1.27 7.60 -2.39 -0.02 1.25 16 47 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 49 H 0.10 1.07 8.05 -2.39 -0.02 1.06 16 Total: -1.00 -79.45 383.88 0.36 -79.10 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.42 Total: 14.45 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 4.87 Total: -46.75 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.49 Total: -79.72 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -4.18 Total: -52.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 38.41 SS G_CDS: -0.28 Total: 38.13 kcal Total: -79.45 0.36 -79.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414550331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.260 kcal (2) G-P(sol) polarization free energy of solvation -79.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds