Wall clock time and date at job start Tue Mar 31 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.53000 * 109.46887 * 179.48685 * 3 2 1 5 5 H 1.08995 * 109.47466 * 303.50120 * 4 3 2 6 6 N 1.46500 * 109.46955 * 63.50233 * 4 3 2 7 7 S 1.65609 * 119.99668 * 235.12930 * 6 4 3 8 8 O 1.42102 * 104.27650 * 181.19502 * 7 6 4 9 9 O 1.42103 * 104.27665 * 309.04932 * 7 6 4 10 10 C 1.81392 * 104.44749 * 65.12256 * 7 6 4 11 11 C 1.53001 * 109.47095 * 178.13874 * 10 7 6 12 12 C 1.52999 * 109.47100 * 300.00026 * 11 10 7 13 13 C 1.53004 * 109.47348 * 59.99813 * 11 10 7 14 14 C 1.50696 * 109.47444 * 179.97438 * 11 10 7 15 15 H 1.07994 * 120.00096 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00188 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99886 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00108 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47088 * 89.99954 * 18 16 14 20 20 H 1.48496 * 109.46963 * 210.00372 * 18 16 14 21 21 H 1.48508 * 109.47017 * 330.00125 * 18 16 14 22 22 C 1.53004 * 109.46860 * 183.49747 * 4 3 2 23 23 C 1.53780 * 113.61450 * 279.53031 * 22 4 3 24 24 C 1.53780 * 87.07841 * 220.01832 * 23 22 4 25 25 C 1.53776 * 113.61166 * 182.03285 * 22 4 3 26 26 H 1.09008 * 109.47291 * 300.00086 * 1 2 3 27 27 H 1.08996 * 109.47467 * 60.00464 * 1 2 3 28 28 H 1.08999 * 109.46768 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47157 * 240.00033 * 2 1 3 30 30 H 1.09004 * 109.46867 * 119.99558 * 2 1 3 31 31 H 1.08995 * 109.47081 * 59.48509 * 3 2 1 32 32 H 1.08995 * 109.46635 * 299.48577 * 3 2 1 33 33 H 0.97002 * 120.00302 * 55.40538 * 6 4 3 34 34 H 1.08997 * 109.47487 * 298.13627 * 10 7 6 35 35 H 1.09003 * 109.47472 * 58.14043 * 10 7 6 36 36 H 1.09000 * 109.47068 * 59.99904 * 12 11 10 37 37 H 1.09001 * 109.47195 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47222 * 299.99932 * 12 11 10 39 39 H 1.09000 * 109.46993 * 59.99708 * 13 11 10 40 40 H 1.09001 * 109.47362 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.46853 * 300.00742 * 13 11 10 42 42 H 0.97004 * 120.00292 * 179.97438 * 17 16 14 43 43 H 1.08996 * 112.84549 * 50.83938 * 22 4 3 44 44 H 1.08996 * 113.61955 * 334.56990 * 23 22 4 45 45 H 1.09001 * 113.60847 * 105.47162 * 23 22 4 46 46 H 1.08994 * 113.61647 * 270.88362 * 24 23 22 47 47 H 1.09006 * 113.68601 * 139.99820 * 24 23 22 48 48 H 1.08998 * 113.61928 * 254.52867 * 25 22 4 49 49 H 1.09001 * 113.61653 * 25.43936 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0129 5 1 3.9260 0.8780 0.8745 6 7 4.0686 0.8227 -1.2172 7 16 5.1170 -0.4566 -1.1335 8 8 5.3991 -0.7678 -2.4911 9 8 6.1423 -0.0125 -0.2555 10 6 4.1504 -1.7843 -0.3636 11 6 5.0050 -3.0501 -0.2719 12 6 5.4328 -3.4795 -1.6767 13 6 6.2472 -2.7665 0.5752 14 6 4.2022 -4.1531 0.3683 15 1 3.1841 -3.9698 0.6784 16 6 4.7671 -5.3966 0.5573 17 7 6.0068 -5.6199 0.1792 18 14 3.7717 -6.7640 1.3502 19 1 3.0512 -7.5255 0.2986 20 1 4.6830 -7.6768 2.0860 21 1 2.7896 -6.1764 2.2966 22 6 4.0791 2.8827 0.1009 23 6 4.0758 3.6208 -1.2482 24 6 5.4241 4.2301 -0.8288 25 6 5.6123 2.9969 0.0704 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6691 1.9590 0.8853 32 1 1.6841 1.9536 -0.8945 33 1 3.7879 1.1640 -2.0807 34 1 3.8456 -1.4785 0.6372 35 1 3.2654 -1.9865 -0.9670 36 1 6.0137 -2.6816 -2.1394 37 1 6.0421 -4.3809 -1.6114 38 1 4.5479 -3.6815 -2.2801 39 1 5.9424 -2.4606 1.5760 40 1 6.8563 -3.6682 0.6401 41 1 6.8280 -1.9686 0.1125 42 1 6.4044 -6.4946 0.3125 43 1 3.6152 3.4469 0.9100 44 1 4.1459 2.9566 -2.1095 45 1 3.2754 4.3547 -1.3423 46 1 5.3278 5.1638 -0.2748 47 1 6.1480 4.2927 -1.6413 48 1 6.0525 3.2271 1.0406 49 1 6.1025 2.1620 -0.4305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416562272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:13 Heat of formation + Delta-G solvation = -74.463562 kcal Electronic energy + Delta-G solvation = -27272.958253 eV Core-core repulsion = 23748.253502 eV Total energy + Delta-G solvation = -3524.704751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.55943 -36.48778 -36.29652 -35.90147 -35.27150 -32.99121 -31.64834 -29.06538 -26.70054 -25.83472 -25.70922 -25.37015 -25.21931 -22.15325 -20.96459 -19.75985 -19.18291 -18.62489 -17.30564 -16.33120 -15.95194 -15.74627 -15.27588 -15.10595 -14.78810 -14.67324 -14.19564 -13.79590 -13.17464 -13.01500 -12.91587 -12.71057 -12.51846 -12.33067 -12.12668 -11.98672 -11.83910 -11.58951 -11.41190 -11.23005 -11.15023 -11.06661 -10.96322 -10.86712 -10.77733 -10.60268 -10.48234 -10.36493 -10.30700 -10.22337 -10.11230 -10.04009 -9.63924 -9.54874 -9.12762 -8.65532 -8.39633 -6.02931 -4.14685 0.90299 3.25380 3.25639 3.33111 3.34832 4.30737 4.38646 4.43708 4.63127 4.69751 4.82748 4.88364 5.00599 5.03093 5.11191 5.22247 5.26803 5.39879 5.44359 5.58775 5.67895 5.69804 5.71773 5.73052 5.85244 5.87577 5.90903 5.92559 6.04141 6.11742 6.14688 6.26775 6.29933 6.41273 6.45213 6.64613 6.71517 6.80332 6.91602 7.03695 7.20847 7.32543 7.51192 7.68343 7.98584 8.10330 8.33730 8.83814 9.50672 10.98367 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.004678 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.079063 B = 5983.664095 C = 6952.328133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C -0.125 4.125 4 C 0.162 3.838 5 H 0.090 0.910 6 N -1.120 6.120 7 S 2.590 3.410 8 O -0.968 6.968 9 O -0.961 6.961 10 C -0.582 4.582 11 C 0.083 3.917 12 C -0.165 4.165 13 C -0.162 4.162 14 C -0.500 4.500 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.140 4.140 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.350 16.309 -0.547 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.165 4.165 4 C 0.054 3.946 5 H 0.108 0.892 6 N -0.877 5.877 7 S 2.687 3.313 8 O -0.958 6.958 9 O -0.951 6.951 10 C -0.716 4.716 11 C 0.081 3.919 12 C -0.223 4.223 13 C -0.219 4.219 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.140 4.140 23 C -0.171 4.171 24 C -0.183 4.183 25 C -0.178 4.178 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.244 0.756 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.240 16.138 -0.682 17.316 hybrid contribution -1.362 -0.857 0.374 1.652 sum -7.602 15.281 -0.308 17.071 Atomic orbital electron populations 1.21744 0.95936 1.01769 1.01285 1.21753 0.95982 0.96655 1.03021 1.21964 0.94471 0.97441 1.02587 1.20631 0.93577 0.93969 0.86382 0.89212 1.55961 1.67830 1.50535 1.13408 1.05697 0.75428 0.74949 0.75176 1.93549 1.83530 1.84101 1.34620 1.93536 1.53911 1.79534 1.68105 1.30639 1.13707 1.15473 1.11749 1.17912 0.91491 0.88327 0.94179 1.22292 1.00876 1.03323 0.95780 1.22249 0.99076 1.01883 0.98732 1.20931 0.98710 0.94632 1.39664 0.92327 1.24932 0.94984 0.98412 0.95387 1.69801 1.12721 1.22727 1.46929 0.86559 0.79913 0.81892 0.79411 1.20686 1.21162 1.19966 1.22915 0.97355 0.95428 0.98347 1.22877 0.97469 0.99171 0.97574 1.22815 0.97703 0.97846 0.99979 1.23099 0.95551 0.98769 1.00355 0.93006 0.93033 0.92600 0.91377 0.91313 0.91029 0.91376 0.75598 0.86481 0.86256 0.95164 0.88741 0.94596 0.94473 0.88697 0.95611 0.92780 0.88691 0.89939 0.91918 0.90680 0.91785 0.91771 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.14 -1.48 4.97 -26.73 -0.13 -1.61 16 3 C -0.13 -1.17 4.88 -26.73 -0.13 -1.30 16 4 C 0.16 1.82 2.19 -67.93 -0.15 1.68 16 5 H 0.09 1.08 7.64 -51.93 -0.40 0.69 16 6 N -1.12 -14.44 3.52 -4.89 -0.02 -14.46 16 7 S 2.59 46.36 4.30 -107.50 -0.46 45.90 16 8 O -0.97 -20.14 15.56 -57.54 -0.90 -21.03 16 9 O -0.96 -19.15 13.33 -57.54 -0.77 -19.92 16 10 C -0.58 -11.00 3.85 37.16 0.14 -10.86 16 11 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 12 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 13 C -0.16 -3.93 7.78 37.16 0.29 -3.64 16 14 C -0.50 -12.92 8.01 -34.44 -0.28 -13.19 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 17 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.12 -1.25 3.59 -89.81 -0.32 -1.57 16 23 C -0.13 -1.29 7.44 -25.92 -0.19 -1.48 16 24 C -0.15 -1.50 8.08 -25.92 -0.21 -1.71 16 25 C -0.14 -1.74 7.52 -25.92 -0.19 -1.94 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.79 6.08 -51.93 -0.32 0.48 16 30 H 0.07 0.79 7.41 -51.93 -0.38 0.41 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 4.55 7.29 -34.48 -0.25 4.30 16 34 H 0.12 2.00 7.21 -51.93 -0.37 1.63 16 35 H 0.12 2.07 6.96 -51.92 -0.36 1.71 16 36 H 0.03 0.71 5.38 -51.93 -0.28 0.43 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 41 H 0.03 0.59 5.55 -51.93 -0.29 0.30 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.82 6.07 -51.93 -0.32 0.50 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.10 1.52 5.32 -51.93 -0.28 1.25 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -30.34 369.39 -10.26 -40.59 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.49 Total: 8.33 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: -0.69 Total: -36.98 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.50 Total: -37.95 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.66 Total: -40.95 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 46.36 SS G_CDS: -0.46 Total: 45.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.34 -10.26 -40.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416562272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.872 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds