Wall clock time and date at job start Tue Mar 31 2020 12:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.53000 * 109.46887 * 179.48685 * 3 2 1 5 5 H 1.08995 * 109.47466 * 303.50120 * 4 3 2 6 6 N 1.46500 * 109.46955 * 63.50233 * 4 3 2 7 7 S 1.65609 * 119.99668 * 235.12930 * 6 4 3 8 8 O 1.42102 * 104.27650 * 181.19502 * 7 6 4 9 9 O 1.42103 * 104.27665 * 309.04932 * 7 6 4 10 10 C 1.81392 * 104.44749 * 65.12256 * 7 6 4 11 11 C 1.53001 * 109.47095 * 178.13874 * 10 7 6 12 12 C 1.52999 * 109.47100 * 300.00026 * 11 10 7 13 13 C 1.53004 * 109.47348 * 59.99813 * 11 10 7 14 14 C 1.50696 * 109.47444 * 179.97438 * 11 10 7 15 15 H 1.07994 * 120.00096 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00188 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99886 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00108 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47088 * 89.99954 * 18 16 14 20 20 H 1.48496 * 109.46963 * 210.00372 * 18 16 14 21 21 H 1.48508 * 109.47017 * 330.00125 * 18 16 14 22 22 C 1.53004 * 109.46860 * 183.49747 * 4 3 2 23 23 C 1.53780 * 113.61450 * 279.53031 * 22 4 3 24 24 C 1.53780 * 87.07841 * 220.01832 * 23 22 4 25 25 C 1.53776 * 113.61166 * 182.03285 * 22 4 3 26 26 H 1.09008 * 109.47291 * 300.00086 * 1 2 3 27 27 H 1.08996 * 109.47467 * 60.00464 * 1 2 3 28 28 H 1.08999 * 109.46768 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47157 * 240.00033 * 2 1 3 30 30 H 1.09004 * 109.46867 * 119.99558 * 2 1 3 31 31 H 1.08995 * 109.47081 * 59.48509 * 3 2 1 32 32 H 1.08995 * 109.46635 * 299.48577 * 3 2 1 33 33 H 0.97002 * 120.00302 * 55.40538 * 6 4 3 34 34 H 1.08997 * 109.47487 * 298.13627 * 10 7 6 35 35 H 1.09003 * 109.47472 * 58.14043 * 10 7 6 36 36 H 1.09000 * 109.47068 * 59.99904 * 12 11 10 37 37 H 1.09001 * 109.47195 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47222 * 299.99932 * 12 11 10 39 39 H 1.09000 * 109.46993 * 59.99708 * 13 11 10 40 40 H 1.09001 * 109.47362 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.46853 * 300.00742 * 13 11 10 42 42 H 0.97004 * 120.00292 * 179.97438 * 17 16 14 43 43 H 1.08996 * 112.84549 * 50.83938 * 22 4 3 44 44 H 1.08996 * 113.61955 * 334.56990 * 23 22 4 45 45 H 1.09001 * 113.60847 * 105.47162 * 23 22 4 46 46 H 1.08994 * 113.61647 * 270.88362 * 24 23 22 47 47 H 1.09006 * 113.68601 * 139.99820 * 24 23 22 48 48 H 1.08998 * 113.61928 * 254.52867 * 25 22 4 49 49 H 1.09001 * 113.61653 * 25.43936 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0129 5 1 3.9260 0.8780 0.8745 6 7 4.0686 0.8227 -1.2172 7 16 5.1170 -0.4566 -1.1335 8 8 5.3991 -0.7678 -2.4911 9 8 6.1423 -0.0125 -0.2555 10 6 4.1504 -1.7843 -0.3636 11 6 5.0050 -3.0501 -0.2719 12 6 5.4328 -3.4795 -1.6767 13 6 6.2472 -2.7665 0.5752 14 6 4.2022 -4.1531 0.3683 15 1 3.1841 -3.9698 0.6784 16 6 4.7671 -5.3966 0.5573 17 7 6.0068 -5.6199 0.1792 18 14 3.7717 -6.7640 1.3502 19 1 3.0512 -7.5255 0.2986 20 1 4.6830 -7.6768 2.0860 21 1 2.7896 -6.1764 2.2966 22 6 4.0791 2.8827 0.1009 23 6 4.0758 3.6208 -1.2482 24 6 5.4241 4.2301 -0.8288 25 6 5.6123 2.9969 0.0704 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6691 1.9590 0.8853 32 1 1.6841 1.9536 -0.8945 33 1 3.7879 1.1640 -2.0807 34 1 3.8456 -1.4785 0.6372 35 1 3.2654 -1.9865 -0.9670 36 1 6.0137 -2.6816 -2.1394 37 1 6.0421 -4.3809 -1.6114 38 1 4.5479 -3.6815 -2.2801 39 1 5.9424 -2.4606 1.5760 40 1 6.8563 -3.6682 0.6401 41 1 6.8280 -1.9686 0.1125 42 1 6.4044 -6.4946 0.3125 43 1 3.6152 3.4469 0.9100 44 1 4.1459 2.9566 -2.1095 45 1 3.2754 4.3547 -1.3423 46 1 5.3278 5.1638 -0.2748 47 1 6.1480 4.2927 -1.6413 48 1 6.0525 3.2271 1.0406 49 1 6.1025 2.1620 -0.4305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416562272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:12 Heat of formation + Delta-G solvation = -91.962283 kcal Electronic energy + Delta-G solvation = -27273.717054 eV Core-core repulsion = 23748.253502 eV Total energy + Delta-G solvation = -3525.463553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42495 -38.13652 -38.02153 -36.88229 -36.73773 -33.97720 -33.56876 -29.98383 -28.34478 -27.69007 -27.23597 -26.63903 -26.18679 -22.99859 -21.86751 -21.34585 -20.49501 -19.72602 -18.75165 -17.87349 -17.41667 -16.93637 -16.69073 -16.37717 -16.22529 -15.75461 -15.27274 -14.89784 -14.67531 -14.59524 -14.40881 -13.94005 -13.75226 -13.69984 -13.21440 -13.12700 -12.95741 -12.90200 -12.84259 -12.78929 -12.65071 -12.53929 -12.47118 -12.17274 -12.14868 -12.02339 -11.98111 -11.66600 -11.59587 -11.52268 -11.34434 -11.23284 -11.14615 -10.92267 -10.58666 -10.40687 -10.11147 -8.01980 -6.20116 -0.55216 1.43806 1.45816 1.54139 1.96903 2.44678 2.89349 3.20482 3.36159 3.58483 3.86139 3.87154 4.02627 4.06271 4.12917 4.23223 4.28274 4.30027 4.40659 4.59404 4.63711 4.66104 4.82351 4.85939 4.87245 4.93356 4.96655 4.98162 5.04969 5.08408 5.11501 5.12617 5.14817 5.18943 5.23487 5.38111 5.40095 5.46618 5.51251 5.55089 5.59618 5.65675 5.77806 5.97558 6.12437 6.23137 6.35412 6.84671 7.48036 8.97903 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.004678 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.079063 B = 5983.664095 C = 6952.328133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C -0.116 4.116 4 C 0.154 3.846 5 H 0.080 0.920 6 N -1.102 6.102 7 S 2.609 3.391 8 O -0.999 6.999 9 O -0.983 6.983 10 C -0.584 4.584 11 C 0.072 3.928 12 C -0.161 4.161 13 C -0.157 4.157 14 C -0.513 4.513 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.909 5.909 18 Si 0.952 3.048 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.112 4.112 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.160 4.160 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.421 0.579 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.260 0.740 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 18.305 -0.056 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C -0.155 4.155 4 C 0.047 3.953 5 H 0.098 0.902 6 N -0.864 5.864 7 S 2.706 3.294 8 O -0.989 6.989 9 O -0.973 6.973 10 C -0.716 4.716 11 C 0.070 3.930 12 C -0.219 4.219 13 C -0.215 4.215 14 C -0.552 4.552 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.548 5.548 18 Si 0.778 3.222 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.132 4.132 23 C -0.167 4.167 24 C -0.180 4.180 25 C -0.198 4.198 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.258 0.742 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.667 18.132 -0.196 20.097 hybrid contribution -0.584 -1.414 0.230 1.547 sum -9.251 16.717 0.034 19.106 Atomic orbital electron populations 1.21728 0.94984 1.01492 1.02368 1.21807 0.96922 0.97528 1.01947 1.21914 0.92414 0.96756 1.04378 1.20902 0.95122 0.94349 0.84947 0.90164 1.55484 1.67139 1.48785 1.14943 1.04821 0.75458 0.75213 0.73938 1.93497 1.84377 1.84964 1.36088 1.93512 1.55341 1.79835 1.68576 1.30560 1.13580 1.13975 1.13496 1.17891 0.91764 0.90280 0.93110 1.22225 1.00583 1.02324 0.96751 1.22170 0.99307 1.00746 0.99260 1.21273 0.99064 0.95361 1.39479 0.91860 1.25662 0.95838 1.00613 0.96042 1.69947 1.13993 1.22983 1.47833 0.85648 0.78635 0.79278 0.78615 1.20478 1.21363 1.19071 1.22950 0.95567 0.94953 0.99730 1.22872 0.97706 0.99326 0.96781 1.22842 0.98023 0.97683 0.99445 1.23137 0.97188 0.98987 1.00457 0.91857 0.92019 0.93622 0.92549 0.92400 0.88896 0.89824 0.74156 0.84777 0.84753 0.94873 0.91183 0.94330 0.94047 0.91192 0.95206 0.93017 0.86195 0.90542 0.89567 0.88835 0.92452 0.92050 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.14 -2.78 4.97 30.60 0.15 -2.63 16 3 C -0.12 -1.75 4.88 30.60 0.15 -1.60 16 4 C 0.15 3.09 2.19 44.99 0.10 3.19 16 5 H 0.08 1.80 7.64 -2.39 -0.02 1.78 16 6 N -1.10 -26.78 3.52 -169.39 -0.60 -27.38 16 7 S 2.61 92.79 4.30 -56.49 -0.24 92.55 16 8 O -1.00 -41.70 15.56 -127.65 -1.99 -43.68 16 9 O -0.98 -39.50 13.33 -127.65 -1.70 -41.21 16 10 C -0.58 -21.74 3.85 71.98 0.28 -21.47 16 11 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 12 C -0.16 -8.08 7.77 71.98 0.56 -7.52 16 13 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 14 C -0.51 -26.46 8.01 25.60 0.21 -26.25 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.02 0.93 5.15 84.66 0.44 1.37 16 17 N -0.91 -50.47 9.35 21.45 0.20 -50.27 16 18 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 C -0.11 -2.00 3.59 -10.27 -0.04 -2.04 16 23 C -0.13 -2.08 7.44 31.12 0.23 -1.85 16 24 C -0.14 -2.62 8.08 31.12 0.25 -2.37 16 25 C -0.16 -3.79 7.52 31.12 0.23 -3.56 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.20 6.08 -2.39 -0.01 1.19 16 30 H 0.06 1.23 7.41 -2.38 -0.02 1.21 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.42 8.57 7.29 -96.74 -0.71 7.86 16 34 H 0.13 4.46 7.21 -2.39 -0.02 4.44 16 35 H 0.13 4.54 6.96 -2.39 -0.02 4.52 16 36 H 0.03 1.60 5.38 -2.39 -0.01 1.59 16 37 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 40 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 41 H 0.03 1.41 5.55 -2.39 -0.01 1.39 16 42 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.32 6.07 -2.39 -0.01 1.30 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.07 2.10 5.32 -2.39 -0.01 2.09 16 Total: -1.00 -65.89 369.39 1.73 -64.16 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.22 Total: 32.07 kcal Atomic # 6 Polarization: -74.13 SS G_CDS: 3.80 Total: -70.33 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -0.40 Total: -77.65 kcal Atomic # 8 Polarization: -81.20 SS G_CDS: -3.69 Total: -84.89 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 92.79 SS G_CDS: -0.24 Total: 92.55 kcal Total: -65.89 1.73 -64.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416562272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.799 kcal (2) G-P(sol) polarization free energy of solvation -65.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds