Wall clock time and date at job start Tue Mar 31 2020 11:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 C 1.53010 * 109.47015 * 240.00178 * 2 1 3 5 5 C 1.52996 * 109.47310 * 120.00249 * 2 1 3 6 6 H 1.09007 * 110.05880 * 176.94184 * 5 2 1 7 7 C 1.54268 * 110.03520 * 298.35895 * 5 2 1 8 8 C 1.54885 * 104.19560 * 142.88979 * 7 5 2 9 9 C 1.54890 * 102.75386 * 322.06495 * 8 7 5 10 10 C 1.53874 * 110.03177 * 55.52780 * 5 2 1 11 11 H 1.09003 * 110.03323 * 359.97438 * 10 5 2 12 12 N 1.46504 * 110.03646 * 121.43280 * 10 5 2 13 13 S 1.65596 * 120.00071 * 213.62245 * 12 10 5 14 14 O 1.42097 * 104.27896 * 181.06635 * 13 12 10 15 15 O 1.42103 * 104.27762 * 308.92436 * 13 12 10 16 16 C 1.81396 * 104.45048 * 64.99595 * 13 12 10 17 17 C 1.53006 * 109.47251 * 180.02562 * 16 13 12 18 18 C 1.52998 * 109.47398 * 179.97438 * 17 16 13 19 19 C 1.50691 * 109.47264 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00575 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00099 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00099 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99911 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47393 * 89.99735 * 23 21 19 25 25 H 1.48505 * 109.46966 * 209.99629 * 23 21 19 26 26 H 1.48504 * 109.47133 * 329.99428 * 23 21 19 27 27 H 1.09005 * 109.46927 * 304.97584 * 1 2 3 28 28 H 1.08999 * 109.47249 * 64.97108 * 1 2 3 29 29 H 1.08992 * 109.46934 * 184.97602 * 1 2 3 30 30 H 1.09007 * 109.47240 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47336 * 300.00358 * 3 2 1 32 32 H 1.09001 * 109.47189 * 60.00760 * 3 2 1 33 33 H 1.09000 * 109.47054 * 300.00411 * 4 2 1 34 34 H 1.08998 * 109.46922 * 60.00047 * 4 2 1 35 35 H 1.08993 * 109.46831 * 179.97438 * 4 2 1 36 36 H 1.09001 * 110.48133 * 24.21983 * 7 5 2 37 37 H 1.08999 * 110.60016 * 261.63018 * 7 5 2 38 38 H 1.08997 * 110.75561 * 203.74131 * 8 7 5 39 39 H 1.09005 * 110.91329 * 80.45364 * 8 7 5 40 40 H 1.09003 * 110.47820 * 279.25939 * 9 8 7 41 41 H 1.08999 * 110.48691 * 156.62369 * 9 8 7 42 42 H 0.96994 * 119.99803 * 33.61410 * 12 10 5 43 43 H 1.08999 * 109.47298 * 299.99911 * 16 13 12 44 44 H 1.08997 * 109.47440 * 60.00396 * 16 13 12 45 45 H 1.08999 * 109.46789 * 300.00091 * 17 16 13 46 46 H 1.08996 * 109.47419 * 59.99860 * 17 16 13 47 47 H 1.09003 * 109.47244 * 300.00398 * 18 17 16 48 48 H 1.09003 * 109.47153 * 59.99835 * 18 17 16 49 49 H 0.96996 * 119.99718 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0400 -0.7213 1.2492 6 1 3.1287 -0.7744 1.2319 7 6 1.5672 0.0193 2.5172 8 6 1.2579 -1.1144 3.5261 9 6 0.6302 -2.2094 2.6282 10 6 1.4443 -2.1383 1.3198 11 1 0.7914 -2.3119 0.4643 12 7 2.5187 -3.1339 1.3427 13 16 2.3003 -4.6048 0.6139 14 8 3.5157 -5.3000 0.8563 15 8 1.0682 -5.0775 1.1410 16 6 2.1306 -4.2154 -1.1496 17 6 1.9205 -5.5088 -1.9396 18 6 1.7767 -5.1804 -3.4270 19 6 1.5704 -6.4543 -4.2050 20 1 1.5440 -7.4033 -3.6902 21 6 1.4143 -6.4083 -5.5742 22 7 1.2348 -7.5201 -6.2533 23 14 1.4592 -4.7668 -6.4647 24 1 2.8560 -4.4576 -6.8628 25 1 0.6033 -4.8374 -7.6763 26 1 0.9539 -3.7005 -5.5631 27 1 -0.3633 0.5891 0.8421 28 1 -0.3634 0.4348 -0.9311 29 1 -0.3633 -1.0237 0.0891 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7208 -1.2496 36 1 0.6682 0.5989 2.3074 37 1 2.3564 0.6662 2.9002 38 1 0.5459 -0.7775 4.2794 39 1 2.1721 -1.4774 3.9959 40 1 -0.4201 -1.9895 2.4365 41 1 0.7372 -3.1902 3.0914 42 1 3.3581 -2.9315 1.7846 43 1 1.2738 -3.5577 -1.2957 44 1 3.0346 -3.7178 -1.5005 45 1 2.7771 -6.1669 -1.7935 46 1 1.0163 -6.0061 -1.5887 47 1 0.9200 -4.5224 -3.5726 48 1 2.6807 -4.6828 -3.7782 49 1 1.1246 -7.4877 -7.2165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416631427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:56 Heat of formation + Delta-G solvation = -110.334099 kcal Electronic energy + Delta-G solvation = -26490.699146 eV Core-core repulsion = 22964.438931 eV Total energy + Delta-G solvation = -3526.260214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22909 -36.92301 -35.86306 -35.67864 -34.82542 -33.40795 -32.22496 -28.64883 -28.38505 -27.84409 -27.50247 -26.69594 -23.63099 -21.60469 -20.93200 -20.51031 -19.38650 -18.54876 -17.37339 -16.90424 -16.75105 -16.04033 -15.82652 -15.47332 -14.93588 -14.51635 -14.27026 -14.18470 -14.08899 -13.56492 -13.00033 -12.95474 -12.65434 -12.52138 -12.38750 -12.18459 -12.09255 -12.08951 -11.91296 -11.84085 -11.82654 -11.59041 -11.55137 -11.48988 -11.18193 -11.00436 -10.96769 -10.90794 -10.60009 -10.56737 -10.49151 -10.09837 -9.89909 -9.78711 -9.35551 -9.24588 -8.59206 -6.08876 -4.08069 0.41035 2.81063 3.25832 3.33427 3.35221 3.87751 4.12493 4.25649 4.32196 4.39698 4.41982 4.73150 4.75921 4.81401 4.90250 4.99601 5.10463 5.13739 5.24801 5.25883 5.28315 5.34604 5.39221 5.39948 5.46576 5.53866 5.55179 5.63727 5.70618 5.72150 5.77343 5.79168 5.89355 5.97262 6.01227 6.07466 6.13494 6.16860 6.18867 6.22830 6.27861 6.66430 6.91491 7.12180 7.26199 7.70699 8.47306 8.95756 9.52271 11.04476 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.004069 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.539143 B = 6878.992797 C = 8255.385289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.155 4.155 5 C -0.087 4.087 6 H 0.083 0.917 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.139 4.139 10 C 0.148 3.852 11 H 0.091 0.909 12 N -1.116 6.116 13 S 2.599 3.401 14 O -0.963 6.963 15 O -0.958 6.958 16 C -0.620 4.620 17 C -0.096 4.096 18 C -0.003 4.003 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.879 3.121 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.414 0.586 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 20.423 17.794 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.213 4.213 5 C -0.107 4.107 6 H 0.102 0.898 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.178 4.178 10 C 0.041 3.959 11 H 0.108 0.892 12 N -0.873 5.873 13 S 2.694 3.306 14 O -0.953 6.953 15 O -0.947 6.947 16 C -0.751 4.751 17 C -0.136 4.136 18 C -0.042 4.042 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.248 0.752 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.611 19.466 17.988 26.512 hybrid contribution 0.407 1.380 -1.049 1.780 sum 1.018 20.846 16.940 26.880 Atomic orbital electron populations 1.22068 0.94505 1.02328 1.01986 1.20579 0.95797 0.95514 0.94497 1.21873 1.00930 0.95168 1.01759 1.22112 1.01390 1.00837 0.96917 1.22172 1.00671 0.93156 0.94667 0.89841 1.22517 1.01395 0.97560 0.94422 1.22494 1.00653 0.95627 0.97439 1.22874 0.99295 1.00155 0.95491 1.21572 0.87647 0.87980 0.98725 0.89151 1.55861 1.24659 1.34706 1.72101 1.05342 0.74425 0.73120 0.77713 1.93584 1.46261 1.70724 1.84746 1.93584 1.46279 1.78313 1.76567 1.30732 1.11109 1.09992 1.23243 1.21301 1.02472 0.91252 0.98527 1.19518 0.96621 0.97961 0.90105 1.21136 1.49965 0.93234 0.92141 0.90738 1.25023 0.94484 0.96322 0.97545 1.69912 1.49616 1.26767 1.07595 0.86787 0.78320 0.84848 0.79377 1.20231 1.21274 1.19031 0.92154 0.92401 0.92117 0.92725 0.92648 0.92477 0.92135 0.92215 0.92306 0.90762 0.91689 0.91616 0.91566 0.90660 0.90195 0.75216 0.85561 0.85162 0.91014 0.90987 0.96210 0.96626 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.92 37.16 0.29 -0.85 16 2 C -0.06 -0.48 0.52 -154.51 -0.08 -0.56 16 3 C -0.14 -0.93 8.21 37.16 0.31 -0.63 16 4 C -0.16 -1.39 8.27 37.16 0.31 -1.09 16 5 C -0.09 -0.64 2.06 -89.50 -0.18 -0.83 16 6 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 7 C -0.12 -0.78 5.06 -25.07 -0.13 -0.91 16 8 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 9 C -0.14 -1.27 6.54 -25.07 -0.16 -1.43 16 10 C 0.15 1.36 1.86 -66.81 -0.12 1.24 16 11 H 0.09 0.85 4.10 -51.93 -0.21 0.64 16 12 N -1.12 -11.29 5.30 -3.94 -0.02 -11.31 16 13 S 2.60 36.91 5.39 -107.50 -0.58 36.33 16 14 O -0.96 -16.64 18.08 -57.54 -1.04 -17.68 16 15 O -0.96 -16.31 17.82 -57.54 -1.03 -17.33 16 16 C -0.62 -8.88 5.16 37.16 0.19 -8.69 16 17 C -0.10 -1.86 5.16 -26.73 -0.14 -2.00 16 18 C 0.00 -0.08 4.04 -27.89 -0.11 -0.19 16 19 C -0.53 -14.95 9.66 -34.44 -0.33 -15.29 16 20 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 23 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 27 H 0.06 0.39 6.34 -51.93 -0.33 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.49 6.06 -51.93 -0.31 0.17 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.34 6.98 -51.93 -0.36 -0.02 16 33 H 0.06 0.58 4.16 -51.93 -0.22 0.36 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.45 5.58 -51.93 -0.29 0.16 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 42 H 0.41 3.41 8.60 -34.47 -0.30 3.11 16 43 H 0.13 1.57 5.89 -51.92 -0.31 1.26 16 44 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 48 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -34.56 377.85 -9.87 -44.44 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.57 Total: 0.53 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: -0.43 Total: -30.42 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.75 Total: -38.23 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -2.07 Total: -35.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 36.91 SS G_CDS: -0.58 Total: 36.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.56 -9.87 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416631427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.898 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds