Wall clock time and date at job start Tue Mar 31 2020 11:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 C 1.53010 * 109.47015 * 240.00178 * 2 1 3 5 5 C 1.52996 * 109.47310 * 120.00249 * 2 1 3 6 6 H 1.09007 * 110.05880 * 176.94184 * 5 2 1 7 7 C 1.54268 * 110.03520 * 298.35895 * 5 2 1 8 8 C 1.54885 * 104.19560 * 142.88979 * 7 5 2 9 9 C 1.54890 * 102.75386 * 322.06495 * 8 7 5 10 10 C 1.53874 * 110.03177 * 55.52780 * 5 2 1 11 11 H 1.09003 * 110.03323 * 359.97438 * 10 5 2 12 12 N 1.46504 * 110.03646 * 121.43280 * 10 5 2 13 13 S 1.65596 * 120.00071 * 213.62245 * 12 10 5 14 14 O 1.42097 * 104.27896 * 181.06635 * 13 12 10 15 15 O 1.42103 * 104.27762 * 308.92436 * 13 12 10 16 16 C 1.81396 * 104.45048 * 64.99595 * 13 12 10 17 17 C 1.53006 * 109.47251 * 180.02562 * 16 13 12 18 18 C 1.52998 * 109.47398 * 179.97438 * 17 16 13 19 19 C 1.50691 * 109.47264 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00575 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00099 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00099 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99911 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47393 * 89.99735 * 23 21 19 25 25 H 1.48505 * 109.46966 * 209.99629 * 23 21 19 26 26 H 1.48504 * 109.47133 * 329.99428 * 23 21 19 27 27 H 1.09005 * 109.46927 * 304.97584 * 1 2 3 28 28 H 1.08999 * 109.47249 * 64.97108 * 1 2 3 29 29 H 1.08992 * 109.46934 * 184.97602 * 1 2 3 30 30 H 1.09007 * 109.47240 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47336 * 300.00358 * 3 2 1 32 32 H 1.09001 * 109.47189 * 60.00760 * 3 2 1 33 33 H 1.09000 * 109.47054 * 300.00411 * 4 2 1 34 34 H 1.08998 * 109.46922 * 60.00047 * 4 2 1 35 35 H 1.08993 * 109.46831 * 179.97438 * 4 2 1 36 36 H 1.09001 * 110.48133 * 24.21983 * 7 5 2 37 37 H 1.08999 * 110.60016 * 261.63018 * 7 5 2 38 38 H 1.08997 * 110.75561 * 203.74131 * 8 7 5 39 39 H 1.09005 * 110.91329 * 80.45364 * 8 7 5 40 40 H 1.09003 * 110.47820 * 279.25939 * 9 8 7 41 41 H 1.08999 * 110.48691 * 156.62369 * 9 8 7 42 42 H 0.96994 * 119.99803 * 33.61410 * 12 10 5 43 43 H 1.08999 * 109.47298 * 299.99911 * 16 13 12 44 44 H 1.08997 * 109.47440 * 60.00396 * 16 13 12 45 45 H 1.08999 * 109.46789 * 300.00091 * 17 16 13 46 46 H 1.08996 * 109.47419 * 59.99860 * 17 16 13 47 47 H 1.09003 * 109.47244 * 300.00398 * 18 17 16 48 48 H 1.09003 * 109.47153 * 59.99835 * 18 17 16 49 49 H 0.96996 * 119.99718 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0400 -0.7213 1.2492 6 1 3.1287 -0.7744 1.2319 7 6 1.5672 0.0193 2.5172 8 6 1.2579 -1.1144 3.5261 9 6 0.6302 -2.2094 2.6282 10 6 1.4443 -2.1383 1.3198 11 1 0.7914 -2.3119 0.4643 12 7 2.5187 -3.1339 1.3427 13 16 2.3003 -4.6048 0.6139 14 8 3.5157 -5.3000 0.8563 15 8 1.0682 -5.0775 1.1410 16 6 2.1306 -4.2154 -1.1496 17 6 1.9205 -5.5088 -1.9396 18 6 1.7767 -5.1804 -3.4270 19 6 1.5704 -6.4543 -4.2050 20 1 1.5440 -7.4033 -3.6902 21 6 1.4143 -6.4083 -5.5742 22 7 1.2348 -7.5201 -6.2533 23 14 1.4592 -4.7668 -6.4647 24 1 2.8560 -4.4576 -6.8628 25 1 0.6033 -4.8374 -7.6763 26 1 0.9539 -3.7005 -5.5631 27 1 -0.3633 0.5891 0.8421 28 1 -0.3634 0.4348 -0.9311 29 1 -0.3633 -1.0237 0.0891 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7208 -1.2496 36 1 0.6682 0.5989 2.3074 37 1 2.3564 0.6662 2.9002 38 1 0.5459 -0.7775 4.2794 39 1 2.1721 -1.4774 3.9959 40 1 -0.4201 -1.9895 2.4365 41 1 0.7372 -3.1902 3.0914 42 1 3.3581 -2.9315 1.7846 43 1 1.2738 -3.5577 -1.2957 44 1 3.0346 -3.7178 -1.5005 45 1 2.7771 -6.1669 -1.7935 46 1 1.0163 -6.0061 -1.5887 47 1 0.9200 -4.5224 -3.5726 48 1 2.6807 -4.6828 -3.7782 49 1 1.1246 -7.4877 -7.2165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416631427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:55 Heat of formation + Delta-G solvation = -134.123514 kcal Electronic energy + Delta-G solvation = -26491.730732 eV Core-core repulsion = 22964.438931 eV Total energy + Delta-G solvation = -3527.291801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84993 -38.18607 -37.06760 -36.58212 -36.34907 -34.29266 -34.12676 -30.21782 -29.19646 -28.43669 -28.10323 -27.31903 -25.41153 -22.35821 -22.16097 -21.55391 -20.39091 -19.36438 -18.96593 -18.35405 -17.59260 -17.27352 -16.76387 -16.42433 -16.21371 -15.81432 -15.41767 -15.05536 -14.89735 -14.69287 -14.18696 -14.11503 -13.83069 -13.68799 -13.30323 -13.23604 -13.21928 -13.13193 -13.11753 -12.77784 -12.73773 -12.71872 -12.63776 -12.37201 -12.21300 -12.07164 -11.85692 -11.74971 -11.66147 -11.63087 -11.41112 -11.32744 -11.16757 -11.11553 -11.03892 -10.78014 -10.29025 -8.30386 -6.36275 -0.75561 1.36007 1.38503 1.50084 1.78180 2.35711 2.73097 3.04819 3.19924 3.51007 3.64578 3.69220 3.80843 3.86976 4.14548 4.16721 4.19680 4.31186 4.32335 4.52823 4.57513 4.65197 4.70116 4.73823 4.75830 4.80752 4.84633 4.92873 4.94818 4.96002 5.01626 5.10492 5.15227 5.22362 5.22837 5.31865 5.34176 5.35641 5.43587 5.45089 5.47646 5.54169 5.60994 5.62124 5.68965 6.16944 6.24818 6.71946 7.28345 8.86691 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.004069 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.539143 B = 6878.992797 C = 8255.385289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.163 4.163 5 C -0.082 4.082 6 H 0.091 0.909 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.145 4.145 10 C 0.139 3.861 11 H 0.089 0.911 12 N -1.098 6.098 13 S 2.618 3.382 14 O -0.996 6.996 15 O -0.989 6.989 16 C -0.614 4.614 17 C -0.101 4.101 18 C -0.003 4.003 19 C -0.544 4.544 20 H 0.029 0.971 21 C 0.002 3.998 22 N -0.952 5.952 23 Si 0.953 3.047 24 H -0.265 1.265 25 H -0.285 1.285 26 H -0.238 1.238 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.425 0.575 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 24.378 18.408 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.061 4.061 3 C -0.195 4.195 4 C -0.220 4.220 5 C -0.102 4.102 6 H 0.109 0.891 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.184 4.184 10 C 0.033 3.967 11 H 0.107 0.893 12 N -0.860 5.860 13 S 2.713 3.287 14 O -0.986 6.986 15 O -0.979 6.979 16 C -0.745 4.745 17 C -0.140 4.140 18 C -0.041 4.041 19 C -0.582 4.582 20 H 0.048 0.952 21 C -0.195 4.195 22 N -0.593 5.593 23 Si 0.776 3.224 24 H -0.190 1.190 25 H -0.211 1.211 26 H -0.161 1.161 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.262 0.738 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.057 23.420 18.634 29.948 hybrid contribution 0.242 0.067 -1.187 1.213 sum 1.299 23.487 17.448 29.288 Atomic orbital electron populations 1.22102 0.94616 1.02073 1.02399 1.20549 0.95694 0.95978 0.93849 1.21850 1.01067 0.94403 1.02171 1.22188 1.01766 1.00511 0.97517 1.22153 1.01023 0.91756 0.95231 0.89057 1.22503 1.02106 0.97260 0.93440 1.22484 1.00714 0.95171 0.97502 1.22902 0.99858 0.99832 0.95807 1.21816 0.87412 0.88669 0.98849 0.89269 1.55443 1.25628 1.33540 1.71340 1.04519 0.73034 0.73571 0.77564 1.93536 1.47410 1.72401 1.85259 1.93546 1.47558 1.79569 1.77214 1.30649 1.13572 1.07829 1.22442 1.21157 1.01848 0.93798 0.97232 1.19483 0.97555 0.95465 0.91643 1.21554 1.49737 0.93960 0.92937 0.95240 1.26100 0.93891 1.00946 0.98545 1.70085 1.51250 1.29826 1.08120 0.85615 0.78989 0.79735 0.78084 1.18963 1.21118 1.16073 0.91064 0.92617 0.92841 0.92490 0.92851 0.91511 0.92872 0.92514 0.91837 0.90121 0.90398 0.90771 0.91530 0.90214 0.92319 0.73788 0.83221 0.82534 0.91952 0.91934 0.94962 0.95105 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 7.92 71.98 0.57 -1.37 16 2 C -0.06 -0.73 0.52 -52.18 -0.03 -0.76 16 3 C -0.14 -1.39 8.21 71.98 0.59 -0.79 16 4 C -0.16 -2.44 8.27 71.99 0.60 -1.84 16 5 C -0.08 -0.96 2.06 -10.07 -0.02 -0.98 16 6 H 0.09 0.97 7.73 -2.38 -0.02 0.95 16 7 C -0.12 -1.10 5.06 31.67 0.16 -0.94 16 8 C -0.12 -1.44 6.91 31.88 0.22 -1.22 16 9 C -0.14 -2.41 6.54 31.67 0.21 -2.20 16 10 C 0.14 2.27 1.86 45.71 0.08 2.35 16 11 H 0.09 1.50 4.10 -2.39 -0.01 1.49 16 12 N -1.10 -20.26 5.30 -166.37 -0.88 -21.14 16 13 S 2.62 72.34 5.39 -56.49 -0.30 72.03 16 14 O -1.00 -34.09 18.08 -127.65 -2.31 -36.40 16 15 O -0.99 -33.71 17.82 -127.65 -2.27 -35.98 16 16 C -0.61 -16.45 5.16 71.98 0.37 -16.08 16 17 C -0.10 -3.89 5.16 30.60 0.16 -3.73 16 18 C 0.00 -0.13 4.04 29.84 0.12 -0.01 16 19 C -0.54 -31.61 9.66 25.60 0.25 -31.36 16 20 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 21 C 0.00 0.11 5.47 84.66 0.46 0.57 16 22 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 23 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 27 H 0.07 0.72 6.34 -2.38 -0.02 0.71 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.74 6.06 -2.39 -0.01 0.73 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.55 6.98 -2.39 -0.02 0.53 16 33 H 0.05 0.85 4.16 -2.39 -0.01 0.84 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.69 5.58 -2.39 -0.01 0.68 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 42 H 0.43 6.10 8.60 -96.75 -0.83 5.27 16 43 H 0.15 3.32 5.89 -2.39 -0.01 3.31 16 44 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 48 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 49 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -76.55 377.85 0.20 -76.35 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.04 Total: 18.44 kcal Atomic # 6 Polarization: -62.10 SS G_CDS: 3.74 Total: -58.36 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -0.58 Total: -81.11 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -4.58 Total: -72.38 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Atomic # 16 Polarization: 72.34 SS G_CDS: -0.30 Total: 72.03 kcal Total: -76.55 0.20 -76.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416631427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.771 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds