Wall clock time and date at job start Tue Mar 31 2020 11:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 120.00322 * 2 1 4 4 H 1.08998 * 110.01740 * 184.77960 * 3 2 1 5 5 C 1.54266 * 110.03160 * 63.33737 * 3 2 1 6 6 C 1.54889 * 104.19553 * 264.32768 * 5 3 2 7 7 C 1.54891 * 102.74760 * 322.05544 * 6 5 3 8 8 C 1.53870 * 110.03036 * 306.17380 * 3 2 1 9 9 H 1.09002 * 110.03499 * 359.94663 * 8 3 2 10 10 C 1.53010 * 110.02978 * 238.56692 * 8 3 2 11 11 C 1.53002 * 109.46699 * 64.95854 * 10 8 3 12 12 C 1.52991 * 109.46953 * 304.95762 * 10 8 3 13 13 C 1.52997 * 109.46994 * 184.95411 * 10 8 3 14 14 S 1.65602 * 119.99890 * 179.97438 * 2 1 3 15 15 O 1.42099 * 104.27736 * 26.07026 * 14 2 1 16 16 O 1.42091 * 104.28030 * 153.93125 * 14 2 1 17 17 C 1.81403 * 104.44790 * 270.00283 * 14 2 1 18 18 C 1.53002 * 109.47035 * 180.02562 * 17 14 2 19 19 C 1.50699 * 109.47076 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00250 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99925 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00292 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47316 * 59.99878 * 23 21 19 25 25 H 1.48497 * 109.47131 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46943 * 299.99834 * 23 21 19 27 27 H 1.09001 * 109.46957 * 84.67969 * 1 2 3 28 28 H 1.09000 * 109.47139 * 204.67814 * 1 2 3 29 29 H 1.08998 * 109.47103 * 324.67988 * 1 2 3 30 30 H 1.09001 * 110.48709 * 23.00171 * 5 3 2 31 31 H 1.08995 * 110.48611 * 145.64855 * 5 3 2 32 32 H 1.09004 * 110.75745 * 80.37516 * 6 5 3 33 33 H 1.08997 * 110.75585 * 203.55588 * 6 5 3 34 34 H 1.09001 * 110.48921 * 279.26382 * 7 6 5 35 35 H 1.09001 * 110.48476 * 156.61914 * 7 6 5 36 36 H 1.08998 * 109.47253 * 299.99604 * 11 10 8 37 37 H 1.09009 * 109.46751 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47510 * 59.99754 * 11 10 8 39 39 H 1.08999 * 109.46759 * 175.00616 * 12 10 8 40 40 H 1.09005 * 109.47292 * 295.00501 * 12 10 8 41 41 H 1.08997 * 109.47577 * 55.00554 * 12 10 8 42 42 H 1.09000 * 109.47649 * 300.00192 * 13 10 8 43 43 H 1.08999 * 109.47120 * 60.00036 * 13 10 8 44 44 H 1.08999 * 109.47067 * 180.02562 * 13 10 8 45 45 H 1.09003 * 109.47190 * 299.99731 * 17 14 2 46 46 H 1.08998 * 109.47467 * 59.99637 * 17 14 2 47 47 H 1.09003 * 109.46770 * 299.99815 * 18 17 14 48 48 H 1.08998 * 109.47431 * 59.99441 * 18 17 14 49 49 H 0.97001 * 120.00492 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2680 1.0815 -0.0853 5 6 1.8986 2.0515 1.2952 6 6 0.7581 3.0214 0.8982 7 6 1.1510 3.4405 -0.5402 8 6 1.7222 2.1518 -1.1670 9 1 0.9471 1.6361 -1.7339 10 6 2.9012 2.4916 -2.0811 11 6 3.4237 1.2116 -2.7365 12 6 4.0176 3.1345 -1.2558 13 6 2.4410 3.4683 -3.1651 14 16 2.2930 -1.4342 0.0006 15 8 1.3969 -2.3564 -0.6041 16 8 3.5394 -1.1195 -0.6046 17 6 2.5192 -1.8254 1.7575 18 6 3.2818 -3.1450 1.8920 19 6 3.4703 -3.4697 3.3515 20 1 3.0851 -2.8015 4.1075 21 6 4.1345 -4.6198 3.7217 22 7 4.6031 -5.4338 2.8011 23 14 4.3688 -5.0220 5.5307 24 1 3.0420 -5.1473 6.1859 25 1 5.1077 -6.3034 5.6613 26 1 5.1423 -3.9352 6.1832 27 1 -0.3633 0.0953 -1.0233 28 1 -0.3633 -0.9338 0.4291 29 1 -0.3633 0.8385 0.5941 30 1 1.5668 1.3744 2.0823 31 1 2.7788 2.6087 1.6160 32 1 -0.2039 2.5087 0.9021 33 1 0.7364 3.8849 1.5629 34 1 1.9105 4.2220 -0.5159 35 1 0.2737 3.7769 -1.0927 36 1 3.7516 0.5157 -1.9642 37 1 4.2640 1.4536 -3.3874 38 1 2.6284 0.7535 -3.3244 39 1 4.8904 3.2954 -1.8885 40 1 3.6734 4.0906 -0.8615 41 1 4.2843 2.4756 -0.4296 42 1 1.6456 3.0103 -3.7531 43 1 2.0687 4.3802 -2.6982 44 1 3.2808 3.7101 -3.8166 45 1 3.0865 -1.0278 2.2372 46 1 1.5450 -1.9177 2.2376 47 1 2.7148 -3.9428 1.4122 48 1 4.2560 -3.0523 1.4120 49 1 5.0701 -6.2431 3.0615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416671030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:08 Heat of formation + Delta-G solvation = -118.798775 kcal Electronic energy + Delta-G solvation = -26986.125191 eV Core-core repulsion = 23459.497920 eV Total energy + Delta-G solvation = -3526.627270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98402 -38.19357 -37.01630 -36.88778 -35.91389 -34.62951 -33.14103 -29.80092 -28.78270 -28.12109 -27.78931 -27.56378 -26.26284 -23.57582 -21.97726 -21.51106 -19.80098 -19.17289 -19.01204 -18.36827 -17.44524 -17.08829 -16.57076 -16.41184 -16.34406 -15.50930 -15.32745 -15.05121 -14.81028 -14.47718 -14.10641 -13.99825 -13.76687 -13.61256 -13.47757 -13.30650 -13.15911 -13.10463 -12.98890 -12.91992 -12.81531 -12.56387 -12.42725 -12.40841 -12.25563 -12.18395 -12.13371 -11.98223 -11.76290 -11.72027 -11.45498 -11.22025 -11.10600 -11.04437 -11.01377 -10.65586 -9.78260 -8.27179 -6.41963 -0.69736 1.39600 1.43385 1.51629 1.76748 2.37092 2.85670 3.05770 3.17522 3.53306 3.72195 3.77525 3.93126 4.07694 4.10316 4.18233 4.22406 4.27305 4.50947 4.56498 4.65685 4.69729 4.71982 4.77239 4.78376 4.83208 4.88413 4.92353 4.97100 4.98786 5.02444 5.08848 5.12521 5.23297 5.23970 5.25718 5.29230 5.33552 5.38282 5.43294 5.50003 5.53666 5.66181 5.67805 5.71032 5.82192 6.04380 6.71207 7.28373 8.84933 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.003672 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.903794 B = 7624.378946 C = 7867.576940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.988 5.988 3 C 0.132 3.868 4 H 0.092 0.908 5 C -0.142 4.142 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.086 4.086 9 H 0.074 0.926 10 C -0.062 4.062 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.134 4.134 14 S 2.605 3.395 15 O -0.998 6.998 16 O -0.983 6.983 17 C -0.590 4.590 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.262 1.262 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.002 0.998 48 H 0.005 0.995 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 23.063 -5.667 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.826 5.826 3 C 0.026 3.974 4 H 0.110 0.890 5 C -0.181 4.181 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.106 4.106 9 H 0.093 0.907 10 C -0.062 4.062 11 C -0.223 4.223 12 C -0.205 4.205 13 C -0.192 4.192 14 S 2.703 3.297 15 O -0.988 6.988 16 O -0.973 6.973 17 C -0.722 4.722 18 C -0.016 4.016 19 C -0.580 4.580 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.021 0.979 48 H 0.023 0.977 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.402 22.424 -6.508 24.815 hybrid contribution 0.415 -1.044 1.064 1.547 sum -7.987 21.380 -5.444 23.464 Atomic orbital electron populations 1.21746 0.77457 1.04028 1.03000 1.57371 1.15592 1.19926 1.89741 1.22005 0.96081 0.82601 0.96672 0.89040 1.22875 1.00461 0.98664 0.96112 1.22587 0.97803 0.98887 0.96490 1.22477 1.00999 0.96057 0.95449 1.22141 0.97149 0.96352 0.94984 0.90727 1.20559 0.95120 0.94936 0.95570 1.22188 1.00537 0.98351 1.01228 1.22028 0.97694 1.01074 0.99664 1.21837 1.00940 0.98823 0.97565 1.04962 0.73242 0.73246 0.78237 1.93485 1.65574 1.64258 1.75472 1.93455 1.45617 1.83217 1.75023 1.30421 1.10450 1.07735 1.23564 1.18788 0.94029 0.89789 0.98976 1.21481 1.37014 1.07509 0.91977 0.90657 1.26135 0.94823 0.95932 1.03292 1.70098 1.38290 1.13297 1.35708 0.85359 0.78911 0.77706 0.78266 1.18711 1.20875 1.18658 0.92232 0.91347 0.87937 0.90823 0.89804 0.90698 0.90146 0.90002 0.90527 0.92042 0.92663 0.94039 0.92756 0.90428 0.93257 0.93130 0.90883 0.92697 0.84357 0.84461 0.97930 0.97662 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 9.22 127.77 1.18 2.89 16 2 N -0.99 -26.09 2.96 -512.73 -1.52 -27.60 16 3 C 0.13 2.98 1.86 45.71 0.09 3.07 16 4 H 0.09 2.45 3.83 -2.39 -0.01 2.44 16 5 C -0.14 -2.43 6.08 31.67 0.19 -2.24 16 6 C -0.12 -1.49 6.52 31.89 0.21 -1.28 16 7 C -0.11 -1.41 5.05 31.67 0.16 -1.25 16 8 C -0.09 -1.61 1.75 -10.07 -0.02 -1.62 16 9 H 0.07 1.51 6.80 -2.39 -0.02 1.49 16 10 C -0.06 -1.20 0.52 -52.18 -0.03 -1.23 16 11 C -0.17 -4.35 8.27 71.98 0.60 -3.75 16 12 C -0.15 -2.65 7.92 71.98 0.57 -2.08 16 13 C -0.13 -2.04 8.21 71.98 0.59 -1.45 16 14 S 2.60 97.35 5.37 -56.49 -0.30 97.05 16 15 O -1.00 -43.49 16.98 -127.65 -2.17 -45.65 16 16 O -0.98 -41.13 14.30 -127.65 -1.83 -42.96 16 17 C -0.59 -23.19 6.12 71.98 0.44 -22.75 16 18 C 0.02 1.24 4.98 29.85 0.15 1.38 16 19 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 20 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 21 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 22 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 27 H 0.06 1.18 7.57 -2.39 -0.02 1.16 16 28 H 0.07 1.50 7.59 -2.39 -0.02 1.48 16 29 H 0.10 1.50 5.03 -2.39 -0.01 1.48 16 30 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 0.86 5.93 -2.39 -0.01 0.84 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.91 5.59 -2.39 -0.01 0.89 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 1.98 4.40 -2.39 -0.01 1.97 16 37 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.05 6.37 -2.38 -0.02 1.03 16 41 H 0.05 1.01 6.03 -2.39 -0.01 1.00 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.86 6.95 -2.39 -0.02 0.84 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 46 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 47 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -73.80 372.70 2.24 -71.57 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.92 Total: 19.61 kcal Atomic # 6 Polarization: -65.08 SS G_CDS: 4.82 Total: -60.26 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.23 Total: -84.87 kcal Atomic # 8 Polarization: -84.62 SS G_CDS: -3.99 Total: -88.61 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 97.35 SS G_CDS: -0.30 Total: 97.05 kcal Total: -73.80 2.24 -71.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416671030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.233 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds