Wall clock time and date at job start Tue Mar 31 2020 11:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00447 * 2 1 4 4 H 1.09003 * 110.01445 * 309.93055 * 3 2 1 5 5 C 1.54259 * 110.03451 * 188.53392 * 3 2 1 6 6 C 1.54968 * 104.16192 * 217.13600 * 5 3 2 7 7 C 1.54890 * 102.77550 * 37.89057 * 6 5 3 8 8 C 1.53872 * 110.02833 * 71.31577 * 3 2 1 9 9 H 1.09006 * 110.02864 * 238.56655 * 8 3 2 10 10 C 1.52991 * 110.03872 * 0.02562 * 8 3 2 11 11 C 1.53001 * 109.46785 * 37.86828 * 10 8 3 12 12 C 1.53003 * 109.47590 * 157.86588 * 10 8 3 13 13 C 1.53000 * 109.47322 * 277.87028 * 10 8 3 14 14 S 1.65604 * 119.99597 * 180.02562 * 2 1 3 15 15 O 1.42099 * 104.27601 * 345.25422 * 14 2 1 16 16 O 1.42098 * 104.27680 * 217.39450 * 14 2 1 17 17 C 1.81403 * 104.44749 * 101.32387 * 14 2 1 18 18 C 1.53003 * 109.46938 * 175.00434 * 17 14 2 19 19 C 1.50696 * 109.47041 * 179.97438 * 18 17 14 20 20 H 1.08007 * 119.99896 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00062 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46961 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47378 * 120.00175 * 23 21 19 26 26 H 1.48499 * 109.46959 * 239.99821 * 23 21 19 27 27 H 1.09002 * 109.46966 * 268.72599 * 1 2 3 28 28 H 1.08998 * 109.46970 * 28.72409 * 1 2 3 29 29 H 1.08995 * 109.48013 * 148.72747 * 1 2 3 30 30 H 1.09003 * 110.48853 * 335.78709 * 5 3 2 31 31 H 1.09003 * 110.48903 * 98.42363 * 5 3 2 32 32 H 1.08998 * 110.71829 * 279.57487 * 6 5 3 33 33 H 1.09003 * 110.76273 * 156.21842 * 6 5 3 34 34 H 1.08998 * 110.48348 * 203.40893 * 7 6 5 35 35 H 1.09000 * 110.60253 * 80.81587 * 7 6 5 36 36 H 1.08998 * 109.47372 * 41.22703 * 11 10 8 37 37 H 1.09007 * 109.47341 * 161.23047 * 11 10 8 38 38 H 1.09006 * 109.46967 * 281.22732 * 11 10 8 39 39 H 1.08994 * 109.46872 * 64.79258 * 12 10 8 40 40 H 1.08996 * 109.47389 * 184.79033 * 12 10 8 41 41 H 1.08996 * 109.46758 * 304.79054 * 12 10 8 42 42 H 1.08996 * 109.47067 * 48.07130 * 13 10 8 43 43 H 1.09001 * 109.47445 * 168.07630 * 13 10 8 44 44 H 1.08998 * 109.47139 * 288.06943 * 13 10 8 45 45 H 1.08997 * 109.47335 * 295.00713 * 17 14 2 46 46 H 1.09000 * 109.47176 * 55.00922 * 17 14 2 47 47 H 1.08997 * 109.47336 * 300.00279 * 18 17 14 48 48 H 1.09000 * 109.46789 * 60.00251 * 18 17 14 49 49 H 0.97004 * 119.99885 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 1 1.8148 1.9205 -0.7854 5 6 3.7030 1.0096 -0.2151 6 6 4.4009 2.0561 0.6901 7 6 3.4870 2.0916 1.9401 8 6 2.0600 1.9566 1.3695 9 1 1.6115 2.9427 1.2485 10 6 1.2019 1.1001 2.3026 11 6 1.5178 -0.3790 2.0716 12 6 1.5080 1.4660 3.7563 13 6 -0.2784 1.3567 2.0129 14 16 2.2929 -1.4342 -0.0006 15 8 1.3147 -2.4037 0.3494 16 8 3.4156 -1.1911 0.8358 17 6 2.8179 -1.6530 -1.7232 18 6 3.7069 -2.8935 -1.8318 19 6 4.1425 -3.0756 -3.2628 20 1 3.8181 -2.3762 -4.0192 21 6 4.9552 -4.1350 -3.6066 22 7 5.3498 -4.9869 -2.6856 23 14 5.4958 -4.3603 -5.3804 24 1 4.9195 -3.2757 -6.2151 25 1 6.9780 -4.3098 -5.4565 26 1 5.0191 -5.6751 -5.8799 27 1 -0.3633 -0.0228 1.0274 28 1 -0.3633 0.9012 -0.4939 29 1 -0.3635 -0.8783 -0.5334 30 1 3.9648 -0.0010 0.0985 31 1 3.9719 1.1675 -1.2595 32 1 4.4272 3.0308 0.2030 33 1 5.4060 1.7284 0.9556 34 1 3.5989 3.0388 2.4676 35 1 3.7128 1.2572 2.6041 36 1 2.5934 -0.5058 1.9481 37 1 1.1794 -0.9610 2.9288 38 1 1.0058 -0.7239 1.1732 39 1 1.2036 2.4957 3.9436 40 1 0.9606 0.7986 4.4220 41 1 2.5777 1.3643 3.9390 42 1 -0.4533 1.3014 0.9385 43 1 -0.8834 0.6042 2.5187 44 1 -0.5532 2.3472 2.3753 45 1 1.9403 -1.7782 -2.3574 46 1 3.3777 -0.7754 -2.0467 47 1 4.5845 -2.7683 -1.1975 48 1 3.1471 -3.7710 -1.5083 49 1 5.9219 -5.7321 -2.9274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416671033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:16 Heat of formation + Delta-G solvation = 116.663549 kcal Electronic energy + Delta-G solvation = -28243.052907 eV Core-core repulsion = 24726.636050 eV Total energy + Delta-G solvation = -3516.416858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.51723 -37.53005 -36.16548 -35.28281 -34.72355 -33.94409 -31.27974 -28.98946 -28.24129 -27.74027 -26.83166 -25.51385 -24.20020 -21.85682 -21.04989 -20.71691 -19.47637 -18.26562 -16.87213 -16.70209 -16.41391 -15.85469 -15.77884 -15.55832 -14.88850 -14.56834 -14.42444 -13.96275 -13.52803 -13.44656 -13.24320 -12.85455 -12.66803 -12.57526 -12.42814 -12.02753 -11.83688 -11.77403 -11.49764 -11.29301 -11.19572 -11.12750 -11.09985 -11.04152 -10.79646 -10.76726 -10.56827 -10.43556 -10.31297 -10.05064 -9.83296 -9.76894 -9.41275 -9.31210 -9.10411 -8.53991 -8.00441 -6.15911 -4.21639 0.62144 2.91680 3.23433 3.30985 3.34230 4.14385 4.34215 4.38345 4.48391 4.65042 4.72493 4.88005 5.03896 5.14763 5.19481 5.27242 5.38866 5.46665 5.49843 5.57298 5.59193 5.61001 5.66707 5.70685 5.77182 5.80856 5.85235 5.91995 5.93729 6.03964 6.06556 6.12752 6.13199 6.15993 6.24799 6.31471 6.40525 6.43257 6.51373 6.55838 6.72564 6.82760 6.94771 7.23569 7.29044 7.77282 8.13012 8.81824 9.43579 10.95117 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.004231 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.740517 B = 6615.864094 C = 7007.444178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -1.000 6.000 3 C 0.163 3.837 4 H 0.074 0.926 5 C -0.244 4.244 6 C -0.106 4.106 7 C -0.119 4.119 8 C -0.089 4.089 9 H 0.070 0.930 10 C -0.033 4.033 11 C -0.316 4.316 12 C -0.145 4.145 13 C -0.192 4.192 14 S 2.611 3.389 15 O -0.964 6.964 16 O -0.937 6.937 17 C -0.597 4.597 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.282 1.282 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.160 0.840 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.034 0.966 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.036 0.964 48 H 0.032 0.968 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 15.710 7.605 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.835 5.835 3 C 0.057 3.943 4 H 0.092 0.908 5 C -0.281 4.281 6 C -0.144 4.144 7 C -0.157 4.157 8 C -0.110 4.110 9 H 0.089 0.911 10 C -0.034 4.034 11 C -0.373 4.373 12 C -0.202 4.202 13 C -0.248 4.248 14 S 2.714 3.286 15 O -0.954 6.954 16 O -0.926 6.926 17 C -0.731 4.731 18 C -0.011 4.011 19 C -0.560 4.560 20 H 0.081 0.919 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.175 0.825 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.053 0.947 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.395 15.015 8.392 19.140 hybrid contribution 0.158 0.325 -1.517 1.559 sum -8.237 15.340 6.876 18.720 Atomic orbital electron populations 1.23078 0.79185 1.02012 1.05287 1.58049 1.14231 1.21256 1.89994 1.21486 0.91576 0.84420 0.96821 0.90832 1.24732 0.93042 1.09254 1.01070 1.22212 0.98917 0.97705 0.95536 1.22524 0.93874 1.01511 0.97767 1.22175 0.96020 0.98074 0.94690 0.91121 1.20103 0.94086 0.95203 0.93984 1.26203 1.10189 0.96397 1.04548 1.22046 1.01985 1.00277 0.95886 1.23224 0.96234 1.00222 1.05113 1.05824 0.73707 0.71524 0.77556 1.93547 1.59262 1.59168 1.83453 1.92953 1.54120 1.82008 1.63546 1.30516 1.11407 1.10952 1.20188 1.18998 0.93620 0.88240 1.00290 1.21021 1.30956 1.11377 0.92621 0.91942 1.25061 0.95838 0.95629 0.97877 1.69961 1.34967 1.14755 1.33085 0.86422 0.78503 0.78193 0.84248 1.19616 1.20732 1.20757 0.87090 0.90593 0.91571 0.82468 0.91123 0.92336 0.91183 0.92279 0.90285 0.84053 0.94687 0.86860 0.93389 0.93246 0.91996 0.87981 0.92565 0.93996 0.85992 0.85651 0.94532 0.95004 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 6.93 59.85 0.41 0.95 16 2 N -1.00 -13.52 1.69 -155.41 -0.26 -13.78 16 3 C 0.16 1.99 3.26 -66.82 -0.22 1.78 16 4 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.24 -3.34 4.72 -25.03 -0.12 -3.46 16 6 C -0.11 -1.27 6.91 -24.70 -0.17 -1.44 16 7 C -0.12 -1.40 4.90 -25.07 -0.12 -1.52 16 8 C -0.09 -1.03 2.43 -89.50 -0.22 -1.24 16 9 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 10 C -0.03 -0.41 0.52 -154.51 -0.08 -0.49 16 11 C -0.32 -4.89 5.12 37.16 0.19 -4.70 16 12 C -0.14 -1.65 7.94 37.16 0.30 -1.36 16 13 C -0.19 -1.98 6.81 37.16 0.25 -1.72 16 14 S 2.61 46.00 3.16 -107.50 -0.34 45.66 16 15 O -0.96 -19.42 15.54 -57.54 -0.89 -20.31 16 16 O -0.94 -17.67 10.84 -57.54 -0.62 -18.30 16 17 C -0.60 -11.31 5.84 37.16 0.22 -11.09 16 18 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 19 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 23 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.11 1.25 2.82 -74.44 -0.21 1.04 16 28 H 0.08 0.64 7.04 -51.93 -0.37 0.27 16 29 H 0.07 0.76 7.52 -51.93 -0.39 0.36 16 30 H 0.16 2.58 3.01 8.05 0.02 2.60 16 31 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.05 5.74 -51.93 -0.30 0.75 16 36 H 0.14 2.43 2.87 10.70 0.03 2.46 16 37 H 0.03 0.56 7.93 -51.92 -0.41 0.14 16 38 H 0.11 1.74 0.62 -104.52 -0.06 1.68 16 39 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.05 0.56 8.04 -51.93 -0.42 0.15 16 41 H 0.06 0.72 5.83 -51.93 -0.30 0.41 16 42 H 0.10 0.94 3.19 -83.09 -0.26 0.67 16 43 H 0.06 0.58 7.63 -51.93 -0.40 0.19 16 44 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 45 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 46 H 0.13 2.13 6.63 -51.92 -0.34 1.78 16 47 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -31.43 344.04 -8.89 -40.32 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.56 Total: 7.32 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: -0.11 Total: -36.67 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.47 Total: -39.10 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.52 Total: -38.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 46.00 SS G_CDS: -0.34 Total: 45.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.43 -8.89 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416671033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.984 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds